Rh1AG282300

Chitinase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0012160
Physical Location & Seq
Reverse (-)
51139221 .. 51142565
3345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG282300.1

Sequence Viewer

Length: 1197 bp
ATGGCGAAGAAAAACGACCGCCGAGTCGTCGCGCCGAGTTCCGATCGCCGTAAAGACCGAGTCGAACCGTCGCACCAACTCGCCCACTCAGCCTCATCCTCCTCAAATCGGAAGCTTGTAATCACCTTCGTCCTCTTCTTCGTCGTATCTTCAGCAATCTCGGTACTCGTGTACCGCCTCAATTATGCTCCGATCACAGACCGGACGGAGTCCTACGTGTTCCGGCGAGGCCTCGTTAAGCCCGACGTGACCTACCAAGAGATCCTCACTGAAAATGCAGTTGTTTCGGAAAATACGACTGGAAGGCACTATACTTATCCTGTATTAGCTTACATTACTCCATGGAATTCTAAGGGCTATGACTTGGCAAAAAGGTTTAACTCCAAATTTACACATATATCTCCAGTCTGGTATGATCTGAAGAGACAAGGGACCCGCTTAATTCTGGAAGGCAGACATAATGCTGATATTGGGTGGATCTCAGACCTTAGAATAGCAGGAGACGCTTGGGTATTGCCTAGAATTGTTCTGGAAGCTTTTCCAGCAGAGCTGCTTACAAAGAAAAAGCAGAGGAATAAGGCTATTGATCTTATAGCATTGCAGTTTATAAAAGATCTTGGAGATGCACTGCATGCTGTGACTTCAGAGAGGAACAATAAGCACCGCTTGCAGTTGGTGTATGTTATAGGCCCACCACATTCAGAGAAGCTCCAAGTGCATGATTTTGGACCTAAAGATCTTCATAGCTTGAGTGATGCTGTGGATGGATTCTCACTTATGACGTATGACTTCTCAGGGCCTCATAATCCAGGTCCCAATGCACCTTTGAAGTGGATCGATTCCACCCTCCAGCTGCTTCTTGGTACCAATAAAAACAGTGCTCTGGCCAGCAAGATACTTCTCGGCATCAATTTCTATGGAAATGATTACATCCTCTCAGGAGGTTCTGGTGGTGGTGCTATCACCGGAAGAGATTACATCTCCTTGTTGGAGAAGCACAAGCCTGCATTTCGATGGGAAAAGAACAGCGCAGAACATTTGTTCTTCTACACTGATAATGATCATAACAATCATGCTGTGTTCTACCCATCGTTACTGTCAATTTCCATGCGGCTTGAGGAAGCTCGTAAATGGGGTTGTGGCATCTCGATATGGGAAATTGGGCAAGGTCTGGATTACTTTTACGATCTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

398

Amino Acids

45.05

Weight (kDa)

9.17

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 201 - 389 4.4e-13 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01040 AT4G01040
fragaria_vesca FvH4_7g16200
malus_domestica MD01G1078600.v1.1 MD07G1147600.v1.1
prunus_persica Prupe.2G185600_v2.0.a1 Prupe.2G185600_v2.0.a1
pyrus_communis pycom01g10710
rosa_chinensis RchiOBHm_Chr1g0359211
rosa_laevigata RLG00000027893
rosa_multiflora Rmu_co8274979.1_g000001 Rmu_ssc0000135.1_g000019
rosa_roxburghii Rroxscaffold_4G00297250
rosa_rugosa Rorug01G0268400
rosa_samantha Rh1AG282300 Rh1BG248700 Rh1CG266500 Rh1DG277700
rosa_wichuraiana Rw1G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 608
AasI GACNNNNNNGTC 1 cut(s) 23
Acc65I GGTACC 1 cut(s) 863
AccB1I GGYRCC 1 cut(s) 863
AccII CGCG 1 cut(s) 32
AciI CCGC 5 cut(s) 19, 175, 436, 664, 1111
AclWI GGATC 3 cut(s) 256, 485, 842
AcoI YGGCCR 1 cut(s) 885
AcsI RAATTY 2 cut(s) 346, 386
AcuI CTGAAG 3 cut(s) 135, 440, 627
AfaI GTAC 3 cut(s) 165, 173, 865
AfiI CCNNNNNNNGG 1 cut(s) 108
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 1 cut(s) 829
AjiI CACGTC 1 cut(s) 247
AjnI CCWGG 1 cut(s) 808
AluBI AGCT 8 cut(s) 115, 329, 536, 550, 709, 747, 853, 1124
AluI AGCT 8 cut(s) 115, 329, 536, 550, 709, 747, 853, 1124
Alw21I GWGCWC 1 cut(s) 883
Alw26I GTCTC 2 cut(s) 418, 495
AlwI GGATC 3 cut(s) 256, 485, 842
AoxI GGCC 4 cut(s) 229, 688, 797, 885
ApeKI GCWGC 2 cut(s) 550, 853
ApoI RAATTY 2 cut(s) 346, 386
Asp700I GAANNNNTTC 1 cut(s) 537
Asp718I GGTACC 1 cut(s) 863
AspLEI GCGC 2 cut(s) 34, 1031
AspS9I GGNCC 5 cut(s) 432, 689, 728, 797, 812
AsuHPI GGTGA 2 cut(s) 115, 955
AvaII GGWCC 3 cut(s) 432, 728, 812
BaeI ACNNNNGTAYC 4 cut(s) 155, 155, 188, 188
BalI TGGCCA 1 cut(s) 887
BanI GGYRCC 1 cut(s) 863
BarI GAAGNNNNNNTAC 2 cut(s) 295, 327
BauI CACGAG 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 883
BbvI GCAGC 2 cut(s) 537, 840
BccI CCATC 3 cut(s) 758, 1008, 1096
BceAI ACGGC 1 cut(s) 33
BcgI CGANNNNNNTGC 2 cut(s) 267, 301
BciT130I CCWGG 1 cut(s) 810
BclI TGATCA 1 cut(s) 1060
BcoDI GTCTC 2 cut(s) 418, 495
BfaI CTAG 1 cut(s) 519
BglII AGATCT 2 cut(s) 613, 736
BisI GCNGC 3 cut(s) 551, 854, 1112
BlsI GCNGC 3 cut(s) 552, 855, 1113
Bme1390I CCNGG 1 cut(s) 810
Bme18I GGWCC 3 cut(s) 432, 728, 812
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 5 cut(s) 432, 689, 728, 797, 812
BmiI GGNNCC 4 cut(s) 433, 434, 814, 865
BmrFI CCNGG 1 cut(s) 810
BmsI GCATC 4 cut(s) 613, 745, 915, 1152
BpmI CTGGAG 2 cut(s) 387, 833
BpuEI CTTGAG 2 cut(s) 769, 1136
Bsa29I ATCGAT 1 cut(s) 837
BsaAI YACGTR 1 cut(s) 217
BsaBI GATNNNNATC 1 cut(s) 1059
BsaJI CCNNGG 1 cut(s) 341
BsaWI WCCGGW 2 cut(s) 201, 965
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 2 cut(s) 304, 404
Bse3DI GCAATG 1 cut(s) 596
Bse8I GATNNNNATC 1 cut(s) 1059
BseBI CCWGG 1 cut(s) 810
BseCI ATCGAT 1 cut(s) 837
BseDI CCNNGG 1 cut(s) 341
BseGI GGATG 3 cut(s) 95, 769, 930
BseJI GATNNNNATC 1 cut(s) 1059
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 596
BseMII CTCAG 4 cut(s) 102, 495, 807, 951
BseNI ACTGG 2 cut(s) 304, 404
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 2 cut(s) 537, 840
Bsh1236I CGCG 1 cut(s) 32
Bsh1285I CGRYCG 2 cut(s) 19, 46
BshFI GGCC 4 cut(s) 231, 690, 799, 887
BshNI GGYRCC 1 cut(s) 863
BshVI ATCGAT 1 cut(s) 837
BsiEI CGRYCG 2 cut(s) 19, 46
BsiHKAI GWGCWC 1 cut(s) 883
BsiSI CCGG 3 cut(s) 202, 223, 966
BslFI GGGAC 2 cut(s) 445, 798
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 2 cut(s) 418, 495
BsmBI CGTCTC 1 cut(s) 495
BsmFI GGGAC 2 cut(s) 445, 798
BsnI GGCC 4 cut(s) 231, 690, 799, 887
Bsp1286I GDGCHC 1 cut(s) 883
Bsp19I CCATGG 1 cut(s) 341
BspACI CCGC 5 cut(s) 19, 175, 436, 664, 1111
BspANI GGCC 4 cut(s) 231, 690, 799, 887
BspCNI CTCAG 4 cut(s) 101, 494, 806, 950
BspDI ATCGAT 1 cut(s) 837
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 4 cut(s) 433, 434, 814, 865
BspPI GGATC 3 cut(s) 256, 485, 842
BspT107I GGYRCC 1 cut(s) 863
BsrDI GCAATG 1 cut(s) 596
BsrI ACTGG 2 cut(s) 304, 404
BssECI CCNNGG 1 cut(s) 341
BssSI CACGAG 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 341
Bst2BI CACGAG 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 810
Bst4CI ACNGT 3 cut(s) 69, 878, 1098
Bst6I CTCTTC 3 cut(s) 140, 416, 964
BstAPI GCANNNNNTGC 2 cut(s) 632, 667
BstBAI YACGTR 1 cut(s) 217
BstC8I GCNNGC 4 cut(s) 633, 668, 889, 1005
BstDEI CTNAG 6 cut(s) 88, 351, 481, 488, 793, 937
BstDSI CCRYGG 1 cut(s) 341
BstF5I GGATG 3 cut(s) 95, 769, 930
BstFNI CGCG 1 cut(s) 32
BstHHI GCGC 2 cut(s) 34, 1031
BstMAI GTCTC 2 cut(s) 418, 495
BstMCI CGRYCG 2 cut(s) 19, 46
BstMWI GCNNNNNNNGC 6 cut(s) 89, 503, 542, 632, 667, 715
BstNI CCWGG 1 cut(s) 810
BstNSI RCATGY 1 cut(s) 635
BstSCI CCNGG 1 cut(s) 808
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 537, 840
BstX2I RGATCY 4 cut(s) 261, 477, 613, 736
BstYI RGATCY 4 cut(s) 261, 477, 613, 736
Bsu15I ATCGAT 1 cut(s) 837
BsuRI GGCC 4 cut(s) 231, 690, 799, 887
BsuTUI ATCGAT 1 cut(s) 837
BtgI CCRYGG 1 cut(s) 341
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 3 cut(s) 95, 769, 930
BtsI GCAGTG 1 cut(s) 626
BtsIMutI CAGTG 4 cut(s) 267, 626, 883, 1050
Cac8I GCNNGC 4 cut(s) 633, 668, 889, 1005
CfoI GCGC 2 cut(s) 34, 1031
Cfr13I GGNCC 5 cut(s) 432, 689, 728, 797, 812
ClaI ATCGAT 1 cut(s) 837
CseI GACGC 1 cut(s) 512
Csp6I GTAC 3 cut(s) 164, 172, 864
CviAII CATG 5 cut(s) 342, 632, 719, 1073, 1108
CviQI GTAC 3 cut(s) 164, 172, 864
DdeI CTNAG 6 cut(s) 88, 351, 481, 488, 793, 937
DrdI GACNNNNNNGTC 1 cut(s) 23
DseDI GACNNNNNNGTC 1 cut(s) 23
EaeI YGGCCR 1 cut(s) 885
Eam1104I CTCTTC 3 cut(s) 140, 416, 964
EarI CTCTTC 3 cut(s) 140, 416, 964
Eco130I CCWWGG 1 cut(s) 341
Eco147I AGGCCT 1 cut(s) 231
Eco47I GGWCC 3 cut(s) 432, 728, 812
Eco57I CTGAAG 3 cut(s) 135, 440, 627
EcoO109I RGGNCCY 3 cut(s) 432, 797, 812
EcoRI GAATTC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 808
EcoT14I CCWWGG 1 cut(s) 341
ErhI CCWWGG 1 cut(s) 341
Esp3I CGTCTC 1 cut(s) 495
FaeI CATG 5 cut(s) 345, 635, 722, 1076, 1111
FalI AAGNNNNNCTT 2 cut(s) 650, 682
FaqI GGGAC 2 cut(s) 445, 798
FatI CATG 5 cut(s) 341, 631, 718, 1072, 1107
FauI CCCGC 1 cut(s) 443
FbaI TGATCA 1 cut(s) 1060
Fnu4HI GCNGC 3 cut(s) 551, 854, 1112
FokI GGATG 3 cut(s) 82, 776, 917
Fsp4HI GCNGC 3 cut(s) 551, 854, 1112
FspBI CTAG 1 cut(s) 519
GlaI GCGC 2 cut(s) 33, 1030
GluI GCNGC 3 cut(s) 551, 854, 1112
GsuI CTGGAG 2 cut(s) 387, 833
HaeIII GGCC 4 cut(s) 231, 690, 799, 887
HapII CCGG 3 cut(s) 202, 223, 966
HgaI GACGC 1 cut(s) 512
HhaI GCGC 2 cut(s) 34, 1031
Hin1II CATG 5 cut(s) 345, 635, 722, 1076, 1111
Hin6I GCGC 2 cut(s) 32, 1029
HinP1I GCGC 2 cut(s) 32, 1029
HindIII AAGCTT 2 cut(s) 113, 534
HinfI GANTC 5 cut(s) 24, 60, 209, 768, 839
HpaII CCGG 3 cut(s) 202, 223, 966
HphI GGTGA 2 cut(s) 115, 955
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 8 cut(s) 43, 111, 192, 289, 420, 484, 646, 703
Hpy188III TCNNGA 5 cut(s) 446, 530, 939, 1147, 1172
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 4 cut(s) 32, 73, 146, 248
HpyAV CCTTC 3 cut(s) 136, 297, 443
HpyCH4III ACNGT 3 cut(s) 69, 878, 1098
HpyCH4IV ACGT 3 cut(s) 216, 246, 782
HpyCH4V TGCA 8 cut(s) 278, 601, 626, 631, 670, 718, 821, 1007
HpyF10VI GCNNNNNNNGC 6 cut(s) 89, 503, 542, 632, 667, 715
HpyF3I CTNAG 6 cut(s) 88, 351, 481, 488, 793, 937
HpySE526I ACGT 3 cut(s) 216, 246, 782
Hsp92II CATG 5 cut(s) 345, 635, 722, 1076, 1111
HspAI GCGC 2 cut(s) 32, 1029
KflI GGGWCCC 1 cut(s) 432
KpnI GGTACC 1 cut(s) 867
Ksp22I TGATCA 1 cut(s) 1060
LmnI GCTCC 2 cut(s) 193, 714
Lsp1109I GCAGC 2 cut(s) 537, 840
LweI GCATC 4 cut(s) 613, 745, 915, 1152
MaeI CTAG 1 cut(s) 519
MaeII ACGT 3 cut(s) 216, 246, 782
MaeIII GTNAC 3 cut(s) 247, 637, 1092
MboII GAAGA 9 cut(s) 19, 127, 130, 141, 433, 731, 981, 1036, 1181
MflI RGATCY 4 cut(s) 261, 477, 613, 736
MhlI GDGCHC 1 cut(s) 883
MlsI TGGCCA 1 cut(s) 887
MluCI AATT 8 cut(s) 181, 346, 386, 441, 522, 910, 1101, 1158
MluNI TGGCCA 1 cut(s) 887
MlyI GAGTC 3 cut(s) 33, 69, 218
MmeI TCCRAC 1 cut(s) 969
Mox20I TGGCCA 1 cut(s) 887
MroXI GAANNNNTTC 1 cut(s) 537
MscI TGGCCA 1 cut(s) 887
MseI TTAA 3 cut(s) 237, 378, 440
MslI CAYNNNNRTG 1 cut(s) 1012
Msp20I TGGCCA 1 cut(s) 887
MspA1I CMGCKG 1 cut(s) 853
MspI CCGG 3 cut(s) 202, 223, 966
MspR9I CCNGG 1 cut(s) 810
MvaI CCWGG 1 cut(s) 810
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 6 cut(s) 89, 503, 542, 632, 667, 715
NcoI CCATGG 1 cut(s) 341
NlaIII CATG 5 cut(s) 345, 635, 722, 1076, 1111
NlaIV GGNNCC 4 cut(s) 433, 434, 814, 865
NmeAIII GCCGAG 3 cut(s) 47, 60, 882
NmuCI GTSAC 2 cut(s) 247, 637
NspI RCATGY 1 cut(s) 635
PaeI GCATGC 1 cut(s) 635
PceI AGGCCT 1 cut(s) 231
PcsI WCGNNNNNNNCGW 2 cut(s) 240, 293
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 2 cut(s) 768, 839
PflFI GACNNNGTC 2 cut(s) 59, 208
PkrI GCNGC 3 cut(s) 552, 855, 1113
Ple19I CGATCG 1 cut(s) 46
PleI GAGTC 3 cut(s) 32, 68, 217
PpsI GAGTC 3 cut(s) 32, 68, 217
Ppu21I YACGTR 1 cut(s) 217
PpuMI RGGWCCY 2 cut(s) 432, 812
PsiI TTATAA 1 cut(s) 608
Psp5II RGGWCCY 2 cut(s) 432, 812
Psp6I CCWGG 1 cut(s) 808
PspGI CCWGG 1 cut(s) 808
PspN4I GGNNCC 4 cut(s) 433, 434, 814, 865
PspPI GGNCC 5 cut(s) 432, 689, 728, 797, 812
PspPPI RGGWCCY 2 cut(s) 432, 812
PsuI RGATCY 4 cut(s) 261, 477, 613, 736
PsyI GACNNNGTC 2 cut(s) 59, 208
PvuI CGATCG 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 853
RsaI GTAC 3 cut(s) 165, 173, 865
RsaNI GTAC 3 cut(s) 164, 172, 864
RseI CAYNNNNRTG 1 cut(s) 1012
SaqAI TTAA 3 cut(s) 237, 378, 440
SatI GCNGC 3 cut(s) 551, 854, 1112
Sau96I GGNCC 5 cut(s) 432, 689, 728, 797, 812
SchI GAGTC 3 cut(s) 33, 69, 218
ScrFI CCNGG 1 cut(s) 810
SduI GDGCHC 1 cut(s) 883
SfaNI GCATC 4 cut(s) 613, 745, 915, 1152
SinI GGWCC 3 cut(s) 432, 728, 812
SmiMI CAYNNNNRTG 1 cut(s) 1012
SmlI CTYRAG 2 cut(s) 748, 1115
SmoI CTYRAG 2 cut(s) 748, 1115
SphI GCATGC 1 cut(s) 635
Sse9I AATT 8 cut(s) 181, 346, 386, 441, 522, 910, 1101, 1158
SseBI AGGCCT 1 cut(s) 231
SsiI CCGC 5 cut(s) 19, 175, 436, 664, 1111
SspMI CTAG 1 cut(s) 519
StuI AGGCCT 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 808
StyI CCWWGG 1 cut(s) 341
TaaI ACNGT 3 cut(s) 69, 878, 1098
TaiI ACGT 3 cut(s) 219, 249, 785
TaqI TCGA 4 cut(s) 63, 837, 1012, 1148
TaqII GACCGA 1 cut(s) 72
TasI AATT 8 cut(s) 181, 346, 386, 441, 522, 910, 1101, 1158
TauI GCSGC 1 cut(s) 1114
TfiI GAWTC 2 cut(s) 768, 839
Tru1I TTAA 3 cut(s) 237, 378, 440
Tru9I TTAA 3 cut(s) 237, 378, 440
TscAI CASTG 4 cut(s) 274, 633, 883, 1057
TseFI GTSAC 2 cut(s) 247, 637
TseI GCWGC 2 cut(s) 550, 853
Tsp45I GTSAC 2 cut(s) 247, 637
TspDTI ATGAA 1 cut(s) 731
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 4 cut(s) 274, 633, 883, 1057
Tth111I GACNNNGTC 2 cut(s) 59, 208
VpaK11BI GGWCC 3 cut(s) 432, 728, 812
XapI RAATTY 2 cut(s) 346, 386
XceI RCATGY 1 cut(s) 635
XcmI CCANNNNNNNNNTGG 1 cut(s) 857
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.