Rw1G025070

Chitinase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0012160
Physical Location & Seq
Reverse (-)
51667056 .. 51677619
10564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G025070.1

Sequence Viewer

Length: 1275 bp
ATGGCGAAGAAAAAAGACCGCCGAGTAGTGGCGTCGAGTTCCGATCGCCCCAAAGACCGAGTCGAACCCCCATCCTCCTCAAATCGGAAGCTCGTAATCACCTTCGTCCTCTTCTTCGTCGTATCTTCAGCAATCTCGGTACTCGTGTACCGCCTCAACTATGCTCCGATCACAGACCGGACGGAGTCCTACGTGTTCCGGCGAGGCCTCGTTAAGCCAGACGTGACCTACCAAGAGATCCTCACTGAAAATGCAGTTGTTTCGGAAAATACGACTGGCAGGCACTATACTTATCCTGTATTAGCTTACATTACTCCATGGAATTCTAAGGGCTATGACTTGGCAAAAAGGTTTAACTCCAAATTTACACATATATCTCCAGTCTGGTATGATCTGAAGAGTCAAGGGACCAGCTTAATTCTGGAAGGCAGACATAATGCTGATATTGGGTGGATCTCAGACCTTAGAATAGCAGGAGACGCTTGGGTATTGCCTAGAATTGTTCTGGAAGCTTTTCCAGCAGAGCTGCTTACAAAGAAAAAGCAGAGGAGTAAGGCCATTGATCTTATAGTAAGCGAGTGCAAGGAAATGGGCTATGATGGAATCGTGCTGGAATCTTGGTCAAGGTGGGCAGCTTACCGTGTTTTGCATGATCCAAAGACGCGGAATTTGGCATTAAAGTTTATAAAAGATCTTGGAGATGCACTGCATGCTGTGACTTCAGAGAGGAACAATAAGCACCGCTTGCAGTTGGTGTATGTTATAGGCCCACCACATTCAGAGAAGCTCCAAGTGCATGATTTTGGACCTAAAGATCTTCATAGCTTGAGTGATGCTGTGGATGGATTCTCACTTATGACATATGACTTCTCAGGGCCTCATAATCCAGGTCCCAATGCACCTTTGAAGTGGATCGATTCCACCCTCCAGCTGCTTCTTGGTACCAATAAAAACAGTGCTCTGGCCAGCAAGATACTTCTCGGCATCAATTTCTATGGAAATGATTACATCCTTTCAGGAGGTCCTGGTGGTGGTGCTATCACTGGAAGAGATTACATCTCCTTGTTGGAGAAGCACAAGCCTGCATTTCGATGGGAAAAGAACAGCGCAGAACATTTGTTCTTCTACACTGATAATGATCATAACAATCATGCTGTGTTCTACCCATCGCTACTGTCAATTTCCATGCGGCTAGAGGAAGCTCGTAAATGGGGTTGTGGCATCTCGATATGGGAAATTGGGCAAGGTCTGGATTACTTTTACGATCTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

424

Amino Acids

48.01

Weight (kDa)

8.96

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 176 - 415 2.2e-17 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01040 AT4G01040
fragaria_vesca FvH4_7g16200
malus_domestica MD01G1078600.v1.1 MD07G1147600.v1.1
prunus_persica Prupe.2G185600_v2.0.a1 Prupe.2G185600_v2.0.a1
pyrus_communis pycom01g10710
rosa_chinensis RchiOBHm_Chr1g0359211
rosa_laevigata RLG00000027893
rosa_multiflora Rmu_co8274979.1_g000001 Rmu_ssc0000135.1_g000019
rosa_roxburghii Rroxscaffold_4G00297250
rosa_rugosa Rorug01G0268400
rosa_samantha Rh1AG282300 Rh1BG248700 Rh1CG266500 Rh1DG277700
rosa_wichuraiana Rw1G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 686
Acc65I GGTACC 1 cut(s) 941
AccB1I GGYRCC 1 cut(s) 941
AccII CGCG 1 cut(s) 664
AciI CCGC 5 cut(s) 19, 151, 664, 742, 1189
AclWI GGATC 4 cut(s) 232, 461, 647, 920
AcoI YGGCCR 1 cut(s) 963
AcsI RAATTY 3 cut(s) 322, 362, 667
AcuI CTGAAG 3 cut(s) 111, 416, 705
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 3 cut(s) 141, 149, 943
AfiI CCNNNNNNNGG 3 cut(s) 28, 84, 1031
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 1 cut(s) 907
AjiI CACGTC 1 cut(s) 223
AjnI CCWGG 2 cut(s) 886, 1024
Alw21I GWGCWC 1 cut(s) 961
Alw26I GTCTC 1 cut(s) 471
AlwI GGATC 4 cut(s) 232, 461, 647, 920
AoxI GGCC 5 cut(s) 205, 555, 766, 875, 963
ApeKI GCWGC 3 cut(s) 526, 632, 931
ApoI RAATTY 3 cut(s) 322, 362, 667
ArsI GACNNNNNNTTYG 4 cut(s) 45, 77, 652, 684
Asp700I GAANNNNTTC 1 cut(s) 513
Asp718I GGTACC 1 cut(s) 941
AspLEI GCGC 1 cut(s) 1109
AspS9I GGNCC 6 cut(s) 408, 767, 806, 875, 890, 1022
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 4 cut(s) 408, 806, 890, 1022
BaeI ACNNNNGTAYC 4 cut(s) 131, 131, 164, 164
BalI TGGCCA 1 cut(s) 965
BanI GGYRCC 1 cut(s) 941
BauI CACGAG 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 961
BbvI GCAGC 3 cut(s) 513, 644, 918
BccI CCATC 5 cut(s) 79, 593, 836, 1086, 1174
BcgI CGANNNNNNTGC 2 cut(s) 243, 277
BciT130I CCWGG 2 cut(s) 888, 1026
BclI TGATCA 1 cut(s) 1138
BcoDI GTCTC 1 cut(s) 471
BfaI CTAG 2 cut(s) 495, 1193
BglII AGATCT 2 cut(s) 691, 814
BisI GCNGC 4 cut(s) 527, 633, 932, 1190
BlsI GCNGC 4 cut(s) 528, 634, 933, 1191
Bme1390I CCNGG 2 cut(s) 888, 1026
Bme18I GGWCC 4 cut(s) 408, 806, 890, 1022
BmgBI CACGTC 1 cut(s) 223
BmgT120I GGNCC 6 cut(s) 408, 767, 806, 875, 890, 1022
BmiI GGNNCC 3 cut(s) 409, 892, 943
BmrFI CCNGG 2 cut(s) 888, 1026
BmsI GCATC 4 cut(s) 691, 823, 993, 1230
BpmI CTGGAG 2 cut(s) 363, 911
BpuEI CTTGAG 1 cut(s) 847
Bsa29I ATCGAT 1 cut(s) 915
BsaAI YACGTR 1 cut(s) 193
BsaBI GATNNNNATC 1 cut(s) 1137
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 317
BsaWI WCCGGW 1 cut(s) 177
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 84, 1031
Bse1I ACTGG 3 cut(s) 280, 380, 1048
Bse8I GATNNNNATC 1 cut(s) 1137
BseBI CCWGG 2 cut(s) 888, 1026
BseCI ATCGAT 1 cut(s) 915
BseDI CCNNGG 1 cut(s) 317
BseGI GGATG 3 cut(s) 71, 847, 1008
BseJI GATNNNNATC 1 cut(s) 1137
BseLI CCNNNNNNNGG 3 cut(s) 28, 84, 1031
BseMII CTCAG 2 cut(s) 471, 885
BseNI ACTGG 3 cut(s) 280, 380, 1048
BseRI GAGGAG 2 cut(s) 67, 562
BseXI GCAGC 3 cut(s) 513, 644, 918
Bsh1236I CGCG 1 cut(s) 664
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 5 cut(s) 207, 557, 768, 877, 965
BshNI GGYRCC 1 cut(s) 941
BshVI ATCGAT 1 cut(s) 915
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 961
BsiSI CCGG 2 cut(s) 178, 199
BslFI GGGAC 2 cut(s) 421, 876
BslI CCNNNNNNNGG 3 cut(s) 28, 84, 1031
BsmAI GTCTC 1 cut(s) 471
BsmBI CGTCTC 1 cut(s) 471
BsmFI GGGAC 2 cut(s) 421, 876
BsnI GGCC 5 cut(s) 207, 557, 768, 877, 965
Bsp1286I GDGCHC 1 cut(s) 961
Bsp19I CCATGG 1 cut(s) 317
BspACI CCGC 5 cut(s) 19, 151, 664, 742, 1189
BspANI GGCC 5 cut(s) 207, 557, 768, 877, 965
BspCNI CTCAG 2 cut(s) 470, 884
BspDI ATCGAT 1 cut(s) 915
BspFNI CGCG 1 cut(s) 664
BspLI GGNNCC 3 cut(s) 409, 892, 943
BspPI GGATC 4 cut(s) 232, 461, 647, 920
BspT107I GGYRCC 1 cut(s) 941
BsrI ACTGG 3 cut(s) 280, 380, 1048
BssECI CCNNGG 1 cut(s) 317
BssNI GRCGYC 1 cut(s) 32
BssSI CACGAG 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 317
Bst2BI CACGAG 1 cut(s) 143
Bst2UI CCWGG 2 cut(s) 888, 1026
Bst4CI ACNGT 3 cut(s) 641, 956, 1176
Bst6I CTCTTC 3 cut(s) 116, 392, 1042
BstACI GRCGYC 1 cut(s) 32
BstAPI GCANNNNNTGC 2 cut(s) 710, 745
BstBAI YACGTR 1 cut(s) 193
BstC8I GCNNGC 5 cut(s) 281, 711, 746, 967, 1083
BstDEI CTNAG 4 cut(s) 327, 457, 464, 871
BstDSI CCRYGG 1 cut(s) 317
BstF5I GGATG 3 cut(s) 71, 847, 1008
BstFNI CGCG 1 cut(s) 664
BstHHI GCGC 1 cut(s) 1109
BstMAI GTCTC 1 cut(s) 471
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 5 cut(s) 479, 518, 710, 745, 793
BstNI CCWGG 2 cut(s) 888, 1026
BstNSI RCATGY 1 cut(s) 713
BstSCI CCNGG 2 cut(s) 886, 1024
BstUI CGCG 1 cut(s) 664
BstV1I GCAGC 3 cut(s) 513, 644, 918
BstX2I RGATCY 4 cut(s) 237, 453, 691, 814
BstYI RGATCY 4 cut(s) 237, 453, 691, 814
Bsu15I ATCGAT 1 cut(s) 915
BsuRI GGCC 5 cut(s) 207, 557, 768, 877, 965
BsuTUI ATCGAT 1 cut(s) 915
BtgI CCRYGG 1 cut(s) 317
BtgZI GCGATG 1 cut(s) 1152
BtrI CACGTC 1 cut(s) 223
BtsCI GGATG 3 cut(s) 71, 847, 1008
BtsI GCAGTG 1 cut(s) 704
BtsIMutI CAGTG 5 cut(s) 243, 704, 961, 1041, 1128
Cac8I GCNNGC 5 cut(s) 281, 711, 746, 967, 1083
CfoI GCGC 1 cut(s) 1109
Cfr13I GGNCC 6 cut(s) 408, 767, 806, 875, 890, 1022
ClaI ATCGAT 1 cut(s) 915
CseI GACGC 3 cut(s) 21, 488, 670
Csp6I GTAC 3 cut(s) 140, 148, 942
CviAII CATG 6 cut(s) 318, 650, 710, 797, 1151, 1186
CviQI GTAC 3 cut(s) 140, 148, 942
DdeI CTNAG 4 cut(s) 327, 457, 464, 871
EaeI YGGCCR 1 cut(s) 963
Eam1104I CTCTTC 3 cut(s) 116, 392, 1042
EarI CTCTTC 3 cut(s) 116, 392, 1042
Eco130I CCWWGG 1 cut(s) 317
Eco147I AGGCCT 1 cut(s) 207
Eco47I GGWCC 4 cut(s) 408, 806, 890, 1022
Eco57I CTGAAG 3 cut(s) 111, 416, 705
EcoO109I RGGNCCY 3 cut(s) 875, 890, 1022
EcoRI GAATTC 1 cut(s) 322
EcoRII CCWGG 2 cut(s) 886, 1024
EcoT14I CCWWGG 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 317
Esp3I CGTCTC 1 cut(s) 471
FaeI CATG 6 cut(s) 321, 653, 713, 800, 1154, 1189
FalI AAGNNNNNCTT 2 cut(s) 728, 760
FaqI GGGAC 2 cut(s) 421, 876
FatI CATG 6 cut(s) 317, 649, 709, 796, 1150, 1185
FauNDI CATATG 1 cut(s) 862
FbaI TGATCA 1 cut(s) 1138
Fnu4HI GCNGC 4 cut(s) 527, 633, 932, 1190
FokI GGATG 3 cut(s) 58, 854, 995
Fsp4HI GCNGC 4 cut(s) 527, 633, 932, 1190
FspBI CTAG 2 cut(s) 495, 1193
GlaI GCGC 1 cut(s) 1108
GluI GCNGC 4 cut(s) 527, 633, 932, 1190
GsuI CTGGAG 2 cut(s) 363, 911
HaeIII GGCC 5 cut(s) 207, 557, 768, 877, 965
HapII CCGG 2 cut(s) 178, 199
HgaI GACGC 3 cut(s) 21, 488, 670
HhaI GCGC 1 cut(s) 1109
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 6 cut(s) 321, 653, 713, 800, 1154, 1189
Hin6I GCGC 1 cut(s) 1107
HinP1I GCGC 1 cut(s) 1107
HindIII AAGCTT 1 cut(s) 510
HinfI GANTC 7 cut(s) 60, 185, 400, 603, 614, 846, 917
HpaII CCGG 2 cut(s) 178, 199
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 8 cut(s) 43, 87, 168, 265, 396, 460, 724, 781
Hpy188III TCNNGA 5 cut(s) 422, 506, 1017, 1225, 1250
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 2 cut(s) 37, 122
HpyAV CCTTC 2 cut(s) 112, 419
HpyCH4III ACNGT 3 cut(s) 641, 956, 1176
HpyCH4IV ACGT 2 cut(s) 192, 222
HpyCH4V TGCA 9 cut(s) 254, 582, 649, 704, 709, 748, 796, 899, 1085
HpyF10VI GCNNNNNNNGC 5 cut(s) 479, 518, 710, 745, 793
HpyF3I CTNAG 4 cut(s) 327, 457, 464, 871
HpySE526I ACGT 2 cut(s) 192, 222
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 6 cut(s) 321, 653, 713, 800, 1154, 1189
HspAI GCGC 1 cut(s) 1107
KpnI GGTACC 1 cut(s) 945
Ksp22I TGATCA 1 cut(s) 1138
LmnI GCTCC 2 cut(s) 169, 792
Lsp1109I GCAGC 3 cut(s) 513, 644, 918
LweI GCATC 4 cut(s) 691, 823, 993, 1230
MaeI CTAG 2 cut(s) 495, 1193
MaeII ACGT 2 cut(s) 192, 222
MaeIII GTNAC 2 cut(s) 223, 715
MboII GAAGA 9 cut(s) 19, 103, 106, 117, 409, 809, 1059, 1114, 1259
MflI RGATCY 4 cut(s) 237, 453, 691, 814
MhlI GDGCHC 1 cut(s) 961
MlsI TGGCCA 1 cut(s) 965
MluCI AATT 8 cut(s) 322, 362, 417, 498, 667, 988, 1179, 1236
MluNI TGGCCA 1 cut(s) 965
MlyI GAGTC 3 cut(s) 69, 194, 409
MmeI TCCRAC 1 cut(s) 1047
Mox20I TGGCCA 1 cut(s) 965
MroXI GAANNNNTTC 1 cut(s) 513
MscI TGGCCA 1 cut(s) 965
MseI TTAA 4 cut(s) 213, 354, 416, 677
MslI CAYNNNNRTG 1 cut(s) 1090
Msp20I TGGCCA 1 cut(s) 965
MspA1I CMGCKG 1 cut(s) 931
MspI CCGG 2 cut(s) 178, 199
MspR9I CCNGG 2 cut(s) 888, 1026
MvaI CCWGG 2 cut(s) 888, 1026
MvnI CGCG 1 cut(s) 664
MwoI GCNNNNNNNGC 5 cut(s) 479, 518, 710, 745, 793
NcoI CCATGG 1 cut(s) 317
NdeI CATATG 1 cut(s) 862
NlaIII CATG 6 cut(s) 321, 653, 713, 800, 1154, 1189
NlaIV GGNNCC 3 cut(s) 409, 892, 943
NmeAIII GCCGAG 2 cut(s) 47, 960
NmuCI GTSAC 2 cut(s) 223, 715
NspI RCATGY 1 cut(s) 713
PaeI GCATGC 1 cut(s) 713
PceI AGGCCT 1 cut(s) 207
PcsI WCGNNNNNNNCGW 1 cut(s) 269
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 4 cut(s) 603, 614, 846, 917
PflFI GACNNNGTC 2 cut(s) 59, 184
PkrI GCNGC 4 cut(s) 528, 634, 933, 1191
Ple19I CGATCG 1 cut(s) 46
PleI GAGTC 3 cut(s) 68, 193, 408
PpsI GAGTC 3 cut(s) 68, 193, 408
Ppu21I YACGTR 1 cut(s) 193
PpuMI RGGWCCY 2 cut(s) 890, 1022
PsiI TTATAA 1 cut(s) 686
Psp5II RGGWCCY 2 cut(s) 890, 1022
Psp6I CCWGG 2 cut(s) 886, 1024
PspGI CCWGG 2 cut(s) 886, 1024
PspN4I GGNNCC 3 cut(s) 409, 892, 943
PspPI GGNCC 6 cut(s) 408, 767, 806, 875, 890, 1022
PspPPI RGGWCCY 2 cut(s) 890, 1022
PsuI RGATCY 4 cut(s) 237, 453, 691, 814
PsyI GACNNNGTC 2 cut(s) 59, 184
PvuI CGATCG 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 931
RsaI GTAC 3 cut(s) 141, 149, 943
RsaNI GTAC 3 cut(s) 140, 148, 942
RseI CAYNNNNRTG 1 cut(s) 1090
SaqAI TTAA 4 cut(s) 213, 354, 416, 677
SatI GCNGC 4 cut(s) 527, 633, 932, 1190
Sau96I GGNCC 6 cut(s) 408, 767, 806, 875, 890, 1022
SchI GAGTC 3 cut(s) 69, 194, 409
ScrFI CCNGG 2 cut(s) 888, 1026
SduI GDGCHC 1 cut(s) 961
SfaNI GCATC 4 cut(s) 691, 823, 993, 1230
SinI GGWCC 4 cut(s) 408, 806, 890, 1022
SmiMI CAYNNNNRTG 1 cut(s) 1090
SmlI CTYRAG 1 cut(s) 826
SmoI CTYRAG 1 cut(s) 826
SphI GCATGC 1 cut(s) 713
Sse9I AATT 8 cut(s) 322, 362, 417, 498, 667, 988, 1179, 1236
SseBI AGGCCT 1 cut(s) 207
SsiI CCGC 5 cut(s) 19, 151, 664, 742, 1189
SspMI CTAG 2 cut(s) 495, 1193
StuI AGGCCT 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 886, 1024
StyI CCWWGG 1 cut(s) 317
TaaI ACNGT 3 cut(s) 641, 956, 1176
TaiI ACGT 2 cut(s) 195, 225
TaqI TCGA 5 cut(s) 35, 63, 915, 1090, 1226
TaqII GACCGA 1 cut(s) 72
TasI AATT 8 cut(s) 322, 362, 417, 498, 667, 988, 1179, 1236
TauI GCSGC 1 cut(s) 1192
TfiI GAWTC 4 cut(s) 603, 614, 846, 917
Tru1I TTAA 4 cut(s) 213, 354, 416, 677
Tru9I TTAA 4 cut(s) 213, 354, 416, 677
TscAI CASTG 5 cut(s) 250, 711, 961, 1048, 1135
TseFI GTSAC 2 cut(s) 223, 715
TseI GCWGC 3 cut(s) 526, 632, 931
Tsp45I GTSAC 2 cut(s) 223, 715
TspDTI ATGAA 1 cut(s) 809
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 5 cut(s) 250, 711, 961, 1048, 1135
Tth111I GACNNNGTC 2 cut(s) 59, 184
VpaK11BI GGWCC 4 cut(s) 408, 806, 890, 1022
XapI RAATTY 3 cut(s) 322, 362, 667
XceI RCATGY 1 cut(s) 713
XcmI CCANNNNNNNNNTGG 2 cut(s) 418, 935
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 2 cut(s) 495, 1193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.