Rh1BG248700

Chitinase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0012160
Physical Location & Seq
Reverse (-)
37748083 .. 37760342
12260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG248700.1

Sequence Viewer

Length: 1293 bp
ATGAAAAATTCGGCCAGTGACGGCGCCAATGGCGAAGAAAAAAGACCGCCGAGTTCCGATCGCCGCAAAGACCGAGTCGAACCGTCGCACCAACTCGCCCACTCAGCCTCATCCTCCTCAAATCGGAAGCTCGTAATCACCTTCGTCCTCTTCTTCGTCGTATCTTCAGCAATCTCAGTACTCGTGTACCGCCTCAATTATGCTCCGATCACAGACCGGACGGAGTCCTACGTGTTCCGGCGAGGCCTCGTTAAGCCCGACGTGACCTACCAAGAGATCCTCACTGAAAATGCTGTTGTTTCGGAAAATACGACTGGCAGGCACTATACTTATCCTGTATTAGCTTACATTACTCCATGGAATTCTAAGGGCTATGACTTGGCAAAAAGGTTTAACTCCAAATTTACACATATATCTCCAGTCTGGTATGATCTGAAGAGTCAAGGGACCAGCTTAATTCTGGAAGGCAGACATAATGCTGATATTGGGTGGATCTCAGACCTTAGAATAGCAGGAGATGCTTGGGTATTGCCTAGAATTGTTCTGGAAGCTTTTCCAGCAGAGCTGCTTACAAAGAAAAAGCAGAGGAATAAGGCTATTGATCTTATAGTAAGCGAGTGCAAGGAAATGGGCTATGATGGAATTGTGCTGGAATCTTGGTCAAGGTGGGCAGCTTACCGTGTTTTGCATGATCCAAAGATGCGGAATTTGGCACTACAGTTTATAAAAGATCTTGGAGATGCACTGCATGCTGTGACTTCAGAGAGGAACAATAAGCACCGCTTGCAGTTGGTGTATGTTATAGGCCCACCACATTCAGAGAAGCTCCAAGTGCATGATTTTGGACCTAAAGATCTTCATAGGTTGAGTGATGCTGTGGATGGATTCTCACTTATGACGTATGACTTCTCAGGGCCTCATAATCCAGGTCCCAATGCACCTCTGAAGTGGATCGATTCCACCCTCCAGCTGCTTCTTGGTACCAATAAAAACAGTGCTCTGGCCAGCAAGATACTTCTCGGCATCAATTTCTATGGAAATGATTACATCCTCTCAGGAGGTCCTGGTGGTGGTGCTATCACCGGAAGAGATTACATCTCCTTGTTGCAGAAGCACAAGCCTGCATTTCGATGGGAAAAGAACAGCGCAGAACATTTGTTCTTCTACACTGATAATGATCATAACAATCATGCTGTGTTCTACCCATCGTTACTGTCAATTTCCATGCGGCTAGAGGAAGCTCGTAAATGGGGTTGTGGCATGTCGATATGGGAAATTGGGCAAGAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

430

Amino Acids

48.65

Weight (kDa)

8.89

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 189 - 428 2.4e-17 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01040 AT4G01040
fragaria_vesca FvH4_7g16200
malus_domestica MD01G1078600.v1.1 MD07G1147600.v1.1
prunus_persica Prupe.2G185600_v2.0.a1 Prupe.2G185600_v2.0.a1
pyrus_communis pycom01g10710
rosa_chinensis RchiOBHm_Chr1g0359211
rosa_laevigata RLG00000027893
rosa_multiflora Rmu_co8274979.1_g000001 Rmu_ssc0000135.1_g000019
rosa_roxburghii Rroxscaffold_4G00297250
rosa_rugosa Rorug01G0268400
rosa_samantha Rh1AG282300 Rh1BG248700 Rh1CG266500 Rh1DG277700
rosa_wichuraiana Rw1G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 725
Acc65I GGTACC 1 cut(s) 980
AccB1I GGYRCC 2 cut(s) 23, 980
AciI CCGC 6 cut(s) 47, 64, 190, 703, 781, 1228
AclWI GGATC 4 cut(s) 271, 500, 686, 959
AcoI YGGCCR 2 cut(s) 12, 1002
AcsI RAATTY 4 cut(s) 7, 361, 401, 706
AcuI CTGAAG 4 cut(s) 150, 455, 744, 965
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 3 cut(s) 180, 188, 982
AfiI CCNNNNNNNGG 2 cut(s) 123, 1070
AflIII ACRYGT 1 cut(s) 231
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 2 cut(s) 925, 1063
AluBI AGCT 9 cut(s) 130, 344, 453, 551, 565, 674, 826, 970, 1241
AluI AGCT 9 cut(s) 130, 344, 453, 551, 565, 674, 826, 970, 1241
Alw21I GWGCWC 1 cut(s) 1000
AlwI GGATC 4 cut(s) 271, 500, 686, 959
AoxI GGCC 5 cut(s) 12, 244, 805, 914, 1002
ApeKI GCWGC 3 cut(s) 565, 671, 970
ApoI RAATTY 4 cut(s) 7, 361, 401, 706
ArsI GACNNNNNNTTYG 2 cut(s) 60, 92
Asp700I GAANNNNTTC 1 cut(s) 552
Asp718I GGTACC 1 cut(s) 980
AspLEI GCGC 2 cut(s) 26, 1148
AspS9I GGNCC 6 cut(s) 447, 806, 845, 914, 929, 1061
AsuHPI GGTGA 2 cut(s) 130, 1072
AvaII GGWCC 4 cut(s) 447, 845, 929, 1061
BaeI ACNNNNGTAYC 2 cut(s) 170, 203
BalI TGGCCA 1 cut(s) 1004
BanI GGYRCC 2 cut(s) 23, 980
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 1000
BbvI GCAGC 3 cut(s) 552, 683, 957
BccI CCATC 4 cut(s) 632, 875, 1125, 1213
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 2 cut(s) 927, 1065
BclI TGATCA 1 cut(s) 1177
BfaI CTAG 2 cut(s) 534, 1232
BfmI CTRYAG 1 cut(s) 716
BfoI RGCGCY 1 cut(s) 27
BglII AGATCT 2 cut(s) 730, 853
BisI GCNGC 5 cut(s) 64, 566, 672, 971, 1229
BlsI GCNGC 5 cut(s) 65, 567, 673, 972, 1230
BmcAI AGTACT 1 cut(s) 180
Bme1390I CCNGG 2 cut(s) 927, 1065
Bme18I GGWCC 4 cut(s) 447, 845, 929, 1061
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 6 cut(s) 447, 806, 845, 914, 929, 1061
BmiI GGNNCC 4 cut(s) 25, 448, 931, 982
BmrFI CCNGG 2 cut(s) 927, 1065
BmsI GCATC 5 cut(s) 508, 690, 730, 862, 1032
BpmI CTGGAG 2 cut(s) 402, 950
Bsa29I ATCGAT 1 cut(s) 954
BsaAI YACGTR 1 cut(s) 232
BsaBI GATNNNNATC 1 cut(s) 1176
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 356
BsaWI WCCGGW 2 cut(s) 216, 1082
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 1070
Bse1I ACTGG 3 cut(s) 15, 319, 419
Bse8I GATNNNNATC 1 cut(s) 1176
BseBI CCWGG 2 cut(s) 927, 1065
BseCI ATCGAT 1 cut(s) 954
BseDI CCNNGG 1 cut(s) 356
BseGI GGATG 3 cut(s) 110, 886, 1047
BseJI GATNNNNATC 1 cut(s) 1176
BseLI CCNNNNNNNGG 2 cut(s) 123, 1070
BseMII CTCAG 5 cut(s) 117, 189, 510, 924, 1068
BseNI ACTGG 3 cut(s) 15, 319, 419
BseRI GAGGAG 1 cut(s) 106
BseXI GCAGC 3 cut(s) 552, 683, 957
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 5 cut(s) 14, 246, 807, 916, 1004
BshNI GGYRCC 2 cut(s) 23, 980
BshVI ATCGAT 1 cut(s) 954
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 1000
BsiSI CCGG 3 cut(s) 217, 238, 1083
BslFI GGGAC 2 cut(s) 460, 915
BslI CCNNNNNNNGG 2 cut(s) 123, 1070
BsmFI GGGAC 2 cut(s) 460, 915
BsnI GGCC 5 cut(s) 14, 246, 807, 916, 1004
Bsp1286I GDGCHC 1 cut(s) 1000
Bsp19I CCATGG 1 cut(s) 356
BspACI CCGC 6 cut(s) 47, 64, 190, 703, 781, 1228
BspANI GGCC 5 cut(s) 14, 246, 807, 916, 1004
BspCNI CTCAG 5 cut(s) 116, 188, 509, 923, 1067
BspDI ATCGAT 1 cut(s) 954
BspLI GGNNCC 4 cut(s) 25, 448, 931, 982
BspPI GGATC 4 cut(s) 271, 500, 686, 959
BspT107I GGYRCC 2 cut(s) 23, 980
BsrI ACTGG 3 cut(s) 15, 319, 419
BssECI CCNNGG 1 cut(s) 356
BssNI GRCGYC 1 cut(s) 24
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 356
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 927, 1065
Bst4CI ACNGT 5 cut(s) 84, 680, 720, 995, 1215
Bst6I CTCTTC 3 cut(s) 155, 431, 1081
BstACI GRCGYC 1 cut(s) 24
BstAPI GCANNNNNTGC 3 cut(s) 518, 749, 784
BstBAI YACGTR 1 cut(s) 232
BstC8I GCNNGC 5 cut(s) 320, 750, 785, 1006, 1122
BstDEI CTNAG 7 cut(s) 103, 175, 366, 496, 503, 910, 1054
BstDSI CCRYGG 1 cut(s) 356
BstF5I GGATG 3 cut(s) 110, 886, 1047
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 2 cut(s) 26, 1148
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 7 cut(s) 30, 104, 518, 557, 749, 784, 832
BstNI CCWGG 2 cut(s) 927, 1065
BstNSI RCATGY 2 cut(s) 752, 1264
BstSCI CCNGG 2 cut(s) 925, 1063
BstSFI CTRYAG 1 cut(s) 716
BstV1I GCAGC 3 cut(s) 552, 683, 957
BstX2I RGATCY 4 cut(s) 276, 492, 730, 853
BstYI RGATCY 4 cut(s) 276, 492, 730, 853
Bsu15I ATCGAT 1 cut(s) 954
BsuRI GGCC 5 cut(s) 14, 246, 807, 916, 1004
BsuTUI ATCGAT 1 cut(s) 954
BtgI CCRYGG 1 cut(s) 356
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 3 cut(s) 110, 886, 1047
BtsI GCAGTG 1 cut(s) 743
BtsIMutI CAGTG 5 cut(s) 22, 282, 743, 1000, 1167
Cac8I GCNNGC 5 cut(s) 320, 750, 785, 1006, 1122
CfoI GCGC 2 cut(s) 26, 1148
Cfr13I GGNCC 6 cut(s) 447, 806, 845, 914, 929, 1061
ClaI ATCGAT 1 cut(s) 954
Csp6I GTAC 3 cut(s) 179, 187, 981
CviAII CATG 7 cut(s) 357, 689, 749, 836, 1190, 1225, 1261
CviQI GTAC 3 cut(s) 179, 187, 981
DdeI CTNAG 7 cut(s) 103, 175, 366, 496, 503, 910, 1054
DinI GGCGCC 1 cut(s) 25
EaeI YGGCCR 2 cut(s) 12, 1002
Eam1104I CTCTTC 3 cut(s) 155, 431, 1081
EarI CTCTTC 3 cut(s) 155, 431, 1081
Eco130I CCWWGG 1 cut(s) 356
Eco147I AGGCCT 1 cut(s) 246
Eco47I GGWCC 4 cut(s) 447, 845, 929, 1061
Eco57I CTGAAG 4 cut(s) 150, 455, 744, 965
EcoO109I RGGNCCY 3 cut(s) 914, 929, 1061
EcoRI GAATTC 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 925, 1063
EcoT14I CCWWGG 1 cut(s) 356
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 7 cut(s) 360, 692, 752, 839, 1193, 1228, 1264
FalI AAGNNNNNCTT 2 cut(s) 767, 799
FaqI GGGAC 2 cut(s) 460, 915
FatI CATG 7 cut(s) 356, 688, 748, 835, 1189, 1224, 1260
FbaI TGATCA 1 cut(s) 1177
Fnu4HI GCNGC 5 cut(s) 64, 566, 672, 971, 1229
FokI GGATG 3 cut(s) 97, 893, 1034
Fsp4HI GCNGC 5 cut(s) 64, 566, 672, 971, 1229
FspBI CTAG 2 cut(s) 534, 1232
GlaI GCGC 2 cut(s) 25, 1147
GluI GCNGC 5 cut(s) 64, 566, 672, 971, 1229
GsuI CTGGAG 2 cut(s) 402, 950
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 5 cut(s) 14, 246, 807, 916, 1004
HapII CCGG 3 cut(s) 217, 238, 1083
HhaI GCGC 2 cut(s) 26, 1148
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 7 cut(s) 360, 692, 752, 839, 1193, 1228, 1264
Hin6I GCGC 2 cut(s) 24, 1146
HinP1I GCGC 2 cut(s) 24, 1146
HindIII AAGCTT 1 cut(s) 549
HinfI GANTC 6 cut(s) 75, 224, 439, 653, 885, 956
HpaII CCGG 3 cut(s) 217, 238, 1083
HphI GGTGA 2 cut(s) 130, 1072
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 9 cut(s) 58, 126, 207, 304, 435, 499, 763, 820, 945
Hpy188III TCNNGA 3 cut(s) 461, 545, 1056
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 3 cut(s) 88, 161, 263
HpyAV CCTTC 2 cut(s) 151, 458
HpyCH4III ACNGT 5 cut(s) 84, 680, 720, 995, 1215
HpyCH4IV ACGT 3 cut(s) 231, 261, 899
HpyCH4V TGCA 9 cut(s) 621, 688, 743, 748, 787, 835, 938, 1108, 1124
HpyF10VI GCNNNNNNNGC 7 cut(s) 30, 104, 518, 557, 749, 784, 832
HpyF3I CTNAG 7 cut(s) 103, 175, 366, 496, 503, 910, 1054
HpySE526I ACGT 3 cut(s) 231, 261, 899
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 7 cut(s) 360, 692, 752, 839, 1193, 1228, 1264
HspAI GCGC 2 cut(s) 24, 1146
KasI GGCGCC 1 cut(s) 23
KpnI GGTACC 1 cut(s) 984
Ksp22I TGATCA 1 cut(s) 1177
LmnI GCTCC 2 cut(s) 208, 831
Lsp1109I GCAGC 3 cut(s) 552, 683, 957
LweI GCATC 5 cut(s) 508, 690, 730, 862, 1032
MaeI CTAG 2 cut(s) 534, 1232
MaeII ACGT 3 cut(s) 231, 261, 899
MaeIII GTNAC 4 cut(s) 17, 262, 754, 1209
MboII GAAGA 8 cut(s) 47, 142, 145, 156, 448, 848, 1098, 1153
MflI RGATCY 4 cut(s) 276, 492, 730, 853
MhlI GDGCHC 1 cut(s) 1000
MlsI TGGCCA 1 cut(s) 1004
MluNI TGGCCA 1 cut(s) 1004
Mly113I GGCGCC 1 cut(s) 24
MlyI GAGTC 3 cut(s) 84, 233, 448
Mox20I TGGCCA 1 cut(s) 1004
MroXI GAANNNNTTC 1 cut(s) 552
MscI TGGCCA 1 cut(s) 1004
MseI TTAA 3 cut(s) 252, 393, 455
MslI CAYNNNNRTG 1 cut(s) 1129
Msp20I TGGCCA 1 cut(s) 1004
MspA1I CMGCKG 1 cut(s) 970
MspI CCGG 3 cut(s) 217, 238, 1083
MspR9I CCNGG 2 cut(s) 927, 1065
MvaI CCWGG 2 cut(s) 927, 1065
MwoI GCNNNNNNNGC 7 cut(s) 30, 104, 518, 557, 749, 784, 832
NarI GGCGCC 1 cut(s) 24
NcoI CCATGG 1 cut(s) 356
NlaIII CATG 7 cut(s) 360, 692, 752, 839, 1193, 1228, 1264
NlaIV GGNNCC 4 cut(s) 25, 448, 931, 982
NmeAIII GCCGAG 2 cut(s) 75, 999
NmuCI GTSAC 3 cut(s) 17, 262, 754
NspI RCATGY 2 cut(s) 752, 1264
PaeI GCATGC 1 cut(s) 752
PceI AGGCCT 1 cut(s) 246
PcsI WCGNNNNNNNCGW 2 cut(s) 255, 308
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 3 cut(s) 653, 885, 956
PflFI GACNNNGTC 2 cut(s) 74, 223
PkrI GCNGC 5 cut(s) 65, 567, 673, 972, 1230
Ple19I CGATCG 1 cut(s) 61
PleI GAGTC 3 cut(s) 83, 232, 447
PluTI GGCGCC 1 cut(s) 27
PpsI GAGTC 3 cut(s) 83, 232, 447
Ppu21I YACGTR 1 cut(s) 232
PpuMI RGGWCCY 2 cut(s) 929, 1061
PsiI TTATAA 1 cut(s) 725
Psp5II RGGWCCY 2 cut(s) 929, 1061
Psp6I CCWGG 2 cut(s) 925, 1063
PspGI CCWGG 2 cut(s) 925, 1063
PspN4I GGNNCC 4 cut(s) 25, 448, 931, 982
PspPI GGNCC 6 cut(s) 447, 806, 845, 914, 929, 1061
PspPPI RGGWCCY 2 cut(s) 929, 1061
PsuI RGATCY 4 cut(s) 276, 492, 730, 853
PsyI GACNNNGTC 2 cut(s) 74, 223
PvuI CGATCG 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 970
RsaI GTAC 3 cut(s) 180, 188, 982
RsaNI GTAC 3 cut(s) 179, 187, 981
RseI CAYNNNNRTG 1 cut(s) 1129
SaqAI TTAA 3 cut(s) 252, 393, 455
SatI GCNGC 5 cut(s) 64, 566, 672, 971, 1229
Sau96I GGNCC 6 cut(s) 447, 806, 845, 914, 929, 1061
ScaI AGTACT 1 cut(s) 180
SchI GAGTC 3 cut(s) 84, 233, 448
ScrFI CCNGG 2 cut(s) 927, 1065
SduI GDGCHC 1 cut(s) 1000
SfaNI GCATC 5 cut(s) 508, 690, 730, 862, 1032
SfcI CTRYAG 1 cut(s) 716
SfoI GGCGCC 1 cut(s) 25
SinI GGWCC 4 cut(s) 447, 845, 929, 1061
SmiMI CAYNNNNRTG 1 cut(s) 1129
SphI GCATGC 1 cut(s) 752
SseBI AGGCCT 1 cut(s) 246
SsiI CCGC 6 cut(s) 47, 64, 190, 703, 781, 1228
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 2 cut(s) 534, 1232
StuI AGGCCT 1 cut(s) 246
StyD4I CCNGG 2 cut(s) 925, 1063
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 5 cut(s) 84, 680, 720, 995, 1215
TaiI ACGT 3 cut(s) 234, 264, 902
TaqI TCGA 4 cut(s) 78, 954, 1129, 1265
TaqII GACCGA 1 cut(s) 87
TatI WGTACW 1 cut(s) 178
TauI GCSGC 2 cut(s) 66, 1231
TfiI GAWTC 3 cut(s) 653, 885, 956
Tru1I TTAA 3 cut(s) 252, 393, 455
Tru9I TTAA 3 cut(s) 252, 393, 455
TscAI CASTG 5 cut(s) 22, 289, 750, 1000, 1174
TseFI GTSAC 3 cut(s) 17, 262, 754
TseI GCWGC 3 cut(s) 565, 671, 970
Tsp45I GTSAC 3 cut(s) 17, 262, 754
TspDTI ATGAA 2 cut(s) 17, 848
TspGWI ACGGA 1 cut(s) 236
TspRI CASTG 5 cut(s) 22, 289, 750, 1000, 1174
Tth111I GACNNNGTC 2 cut(s) 74, 223
VpaK11BI GGWCC 4 cut(s) 447, 845, 929, 1061
XapI RAATTY 4 cut(s) 7, 361, 401, 706
XceI RCATGY 2 cut(s) 752, 1264
XcmI CCANNNNNNNNNTGG 2 cut(s) 457, 974
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 2 cut(s) 534, 1232
ZrmI AGTACT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.