Rmu_co8274979.1_g000001

Chitinase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8274979.1
OG0012160
Physical Location & Seq
Reverse (-)
1 .. 726
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8274979.1_g000001.1.cds

Sequence Viewer

Length: 541 bp
ctgcatgctgtgacttcagagaggaacaataagcaccgcttgcagttggtgtatgttataggcccaccacattcagagaagctccaagtgcatgattttggacctaaagatcttcatagcttgagtgatgctgtggatggattctcacttatgacatatgacttctcagggcctcataatccaggtcccaatgcacctttgaagtggatcgattccaccctccagctgcttcttggtaccaataaaaacagtgctctggccagcaagatacttctcggcatcaatttctatggaaatgattacatcctctcgggaggtcctggtggtggtgctatcactggaagagattacatctccttgttggagaagcacaagcctgcatttcgatgggaaaagaacagcgcagaacatttgttcttctacactgataatgatcataacaatcatgctgtgttctacccatcgttactgtcaatttccatgcggctagaggaagctcgtaaatggggttgtggcatctcgatatgggaaattgggcaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

180

Amino Acids

20.08

Weight (kDa)

6.57

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01040 AT4G01040
fragaria_vesca FvH4_7g16200
malus_domestica MD01G1078600.v1.1 MD07G1147600.v1.1
prunus_persica Prupe.2G185600_v2.0.a1 Prupe.2G185600_v2.0.a1
pyrus_communis pycom01g10710
rosa_chinensis RchiOBHm_Chr1g0359211
rosa_laevigata RLG00000027893
rosa_multiflora Rmu_co8274979.1_g000001 Rmu_ssc0000135.1_g000019
rosa_roxburghii Rroxscaffold_4G00297250
rosa_rugosa Rorug01G0268400
rosa_samantha Rh1AG282300 Rh1BG248700 Rh1CG266500 Rh1DG277700
rosa_wichuraiana Rw1G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 236
AciI CCGC 2 cut(s) 37, 484
AclWI GGATC 1 cut(s) 215
AcoI YGGCCR 1 cut(s) 258
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 1 cut(s) 202
AjnI CCWGG 2 cut(s) 181, 319
AluBI AGCT 4 cut(s) 82, 120, 226, 497
AluI AGCT 4 cut(s) 82, 120, 226, 497
Alw21I GWGCWC 1 cut(s) 256
AlwI GGATC 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 310
AoxI GGCC 3 cut(s) 61, 170, 258
ApeKI GCWGC 1 cut(s) 226
Asp718I GGTACC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 5 cut(s) 62, 101, 170, 185, 317
AvaI CYCGRG 1 cut(s) 310
AvaII GGWCC 3 cut(s) 101, 185, 317
BalI TGGCCA 1 cut(s) 260
BanI GGYRCC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 213
BccI CCATC 3 cut(s) 131, 381, 469
BciT130I CCWGG 2 cut(s) 183, 321
BclI TGATCA 1 cut(s) 433
BfaI CTAG 1 cut(s) 488
BglII AGATCT 1 cut(s) 109
BisI GCNGC 2 cut(s) 227, 485
BlsI GCNGC 2 cut(s) 228, 486
Bme1390I CCNGG 2 cut(s) 183, 321
Bme18I GGWCC 3 cut(s) 101, 185, 317
BmeT110I CYCGRG 1 cut(s) 310
BmgT120I GGNCC 5 cut(s) 62, 101, 170, 185, 317
BmiI GGNNCC 2 cut(s) 187, 238
BmrFI CCNGG 2 cut(s) 183, 321
BmsI GCATC 3 cut(s) 118, 288, 525
BpmI CTGGAG 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 142
Bsa29I ATCGAT 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 432
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 343
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 2 cut(s) 183, 321
BseCI ATCGAT 1 cut(s) 210
BseGI GGATG 2 cut(s) 142, 303
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 343
BseXI GCAGC 1 cut(s) 213
BshFI GGCC 3 cut(s) 63, 172, 260
BshNI GGYRCC 1 cut(s) 236
BshVI ATCGAT 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 256
BsiHKCI CYCGRG 1 cut(s) 310
BslFI GGGAC 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 171
BsnI GGCC 3 cut(s) 63, 172, 260
BsoBI CYCGRG 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 3 cut(s) 109, 207, 433
BspACI CCGC 2 cut(s) 37, 484
BspANI GGCC 3 cut(s) 63, 172, 260
BspCNI CTCAG 1 cut(s) 179
BspDI ATCGAT 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 187, 238
BspPI GGATC 1 cut(s) 215
BspT107I GGYRCC 1 cut(s) 236
BsrI ACTGG 1 cut(s) 343
BssMI GATC 3 cut(s) 109, 207, 433
Bst2UI CCWGG 2 cut(s) 183, 321
Bst4CI ACNGT 2 cut(s) 251, 471
Bst6I CTCTTC 1 cut(s) 337
BstAPI GCANNNNNTGC 1 cut(s) 40
BstC8I GCNNGC 4 cut(s) 6, 41, 262, 378
BstDEI CTNAG 1 cut(s) 166
BstF5I GGATG 2 cut(s) 142, 303
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 3 cut(s) 112, 210, 436
BstMBI GATC 3 cut(s) 109, 207, 433
BstMWI GCNNNNNNNGC 2 cut(s) 40, 88
BstNI CCWGG 2 cut(s) 183, 321
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 2 cut(s) 181, 319
BstV1I GCAGC 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
Bsu15I ATCGAT 1 cut(s) 210
BsuRI GGCC 3 cut(s) 63, 172, 260
BsuTUI ATCGAT 1 cut(s) 210
BtsCI GGATG 2 cut(s) 142, 303
BtsIMutI CAGTG 3 cut(s) 256, 336, 423
Cac8I GCNNGC 4 cut(s) 6, 41, 262, 378
CfoI GCGC 1 cut(s) 404
Cfr13I GGNCC 5 cut(s) 62, 101, 170, 185, 317
ClaI ATCGAT 1 cut(s) 210
Csp6I GTAC 1 cut(s) 237
CviAII CATG 4 cut(s) 5, 92, 446, 481
CviJI RGCY 9 cut(s) 63, 82, 120, 172, 226, 260, 376, 487, 497
CviKI_1 RGCY 9 cut(s) 63, 82, 120, 172, 226, 260, 376, 487, 497
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 1 cut(s) 166
DpnI GATC 3 cut(s) 111, 209, 435
DpnII GATC 3 cut(s) 109, 207, 433
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 337
Eco47I GGWCC 3 cut(s) 101, 185, 317
Eco88I CYCGRG 1 cut(s) 310
EcoO109I RGGNCCY 3 cut(s) 170, 185, 317
EcoRII CCWGG 2 cut(s) 181, 319
FaeI CATG 4 cut(s) 8, 95, 449, 484
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FaqI GGGAC 1 cut(s) 171
FatI CATG 4 cut(s) 4, 91, 445, 480
FauNDI CATATG 1 cut(s) 157
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 2 cut(s) 227, 485
FokI GGATG 2 cut(s) 149, 290
Fsp4HI GCNGC 2 cut(s) 227, 485
FspBI CTAG 1 cut(s) 488
GlaI GCGC 1 cut(s) 403
GluI GCNGC 2 cut(s) 227, 485
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 3 cut(s) 63, 172, 260
HhaI GCGC 1 cut(s) 404
Hin1II CATG 4 cut(s) 8, 95, 449, 484
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HinfI GANTC 2 cut(s) 141, 212
Hpy188I TCNGA 2 cut(s) 19, 76
Hpy188III TCNNGA 2 cut(s) 312, 520
HpyCH4III ACNGT 2 cut(s) 251, 471
HpyCH4V TGCA 5 cut(s) 4, 43, 91, 194, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 88
HpyF3I CTNAG 1 cut(s) 166
Hsp92II CATG 4 cut(s) 8, 95, 449, 484
HspAI GCGC 1 cut(s) 402
KpnI GGTACC 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 3 cut(s) 109, 207, 433
LmnI GCTCC 1 cut(s) 87
Lsp1109I GCAGC 1 cut(s) 213
LweI GCATC 3 cut(s) 118, 288, 525
MaeI CTAG 1 cut(s) 488
MaeIII GTNAC 2 cut(s) 10, 465
MalI GATC 3 cut(s) 111, 209, 435
MboI GATC 3 cut(s) 109, 207, 433
MboII GAAGA 3 cut(s) 104, 354, 409
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 256
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 3 cut(s) 283, 474, 531
MluNI TGGCCA 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 342
MnlI CCTC 6 cut(s) 15, 183, 230, 308, 317, 484
Mox20I TGGCCA 1 cut(s) 260
MscI TGGCCA 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 385
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 226
MspR9I CCNGG 2 cut(s) 183, 321
MvaI CCWGG 2 cut(s) 183, 321
MwoI GCNNNNNNNGC 2 cut(s) 40, 88
NdeI CATATG 1 cut(s) 157
NdeII GATC 3 cut(s) 109, 207, 433
NlaIII CATG 4 cut(s) 8, 95, 449, 484
NlaIV GGNNCC 2 cut(s) 187, 238
NmeAIII GCCGAG 1 cut(s) 255
NmuCI GTSAC 1 cut(s) 10
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 141, 212
PkrI GCNGC 2 cut(s) 228, 486
PpuMI RGGWCCY 2 cut(s) 185, 317
Psp5II RGGWCCY 2 cut(s) 185, 317
Psp6I CCWGG 2 cut(s) 181, 319
PspGI CCWGG 2 cut(s) 181, 319
PspN4I GGNNCC 2 cut(s) 187, 238
PspPI GGNCC 5 cut(s) 62, 101, 170, 185, 317
PspPPI RGGWCCY 2 cut(s) 185, 317
PsuI RGATCY 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 226
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
RseI CAYNNNNRTG 1 cut(s) 385
SatI GCNGC 2 cut(s) 227, 485
Sau3AI GATC 3 cut(s) 109, 207, 433
Sau96I GGNCC 5 cut(s) 62, 101, 170, 185, 317
ScrFI CCNGG 2 cut(s) 183, 321
SduI GDGCHC 1 cut(s) 256
SetI ASST 8 cut(s) 84, 106, 122, 187, 199, 228, 319, 499
SfaNI GCATC 3 cut(s) 118, 288, 525
SinI GGWCC 3 cut(s) 101, 185, 317
SmiMI CAYNNNNRTG 1 cut(s) 385
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
SphI GCATGC 1 cut(s) 8
Sse9I AATT 3 cut(s) 283, 474, 531
SsiI CCGC 2 cut(s) 37, 484
SspMI CTAG 1 cut(s) 488
StyD4I CCNGG 2 cut(s) 181, 319
TaaI ACNGT 2 cut(s) 251, 471
TaqI TCGA 3 cut(s) 210, 385, 521
TasI AATT 3 cut(s) 283, 474, 531
TauI GCSGC 1 cut(s) 487
TfiI GAWTC 2 cut(s) 141, 212
TscAI CASTG 3 cut(s) 256, 343, 430
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 1 cut(s) 104
TspRI CASTG 3 cut(s) 256, 343, 430
VpaK11BI GGWCC 3 cut(s) 101, 185, 317
XceI RCATGY 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
XspI CTAG 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.