Rorug01G0268400

Chitinase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012160
Physical Location & Seq
Reverse (-)
38062208 .. 38066286
4079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0268400.1

Sequence Viewer

Length: 609 bp
ATGGCAGATAAGAACTTGCCACTCTCAATTCCTGAAGGCCAGGAGATTAAGATTGAAGTCCAAGGGAATCAATCTGAAACCTCGGGCTACTGCTTTCCACCAAGTGGTTTCCATTCCATAACATATGCAGATGTGTTGGGTTATGTTAATGATGATAAGGAAGCTAAGATGTCCAACTATTCAGCTTTGCTGACCGGAGGTGCAAACAACCTAAGCAATCAATACTGCACTATTTGCAAAGAACCTGGGCATGATACTAATGTTTGTCCCCGACCCTTCATACTAGATTGGCTTGGGTTCCCTATCAATGGCATCCCAATTGTTCAGCGTCCGCCTTGGATCCCACCAATTGGTCTTCCACACATGCCAACTGTTCGCCAGCACTTGGCAACTGTTAGACGCCGGCGCCGGGCAACCATTAGACGCGGACACATGCAAACTTTTGGATGCCTGCAAATGCCAGTTCGTGTCCATTCACTTCAGCAACCATTCATAGTCCGAGCACCTTCAATCGATAGAGGCAGGACTGTGGCCAATAGGAGGCAACCAGAGTGCAGTCGTTGTGGCAGGGCTGGGCACAATATTCGCACCTGCGGTGAATCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

202

Amino Acids

22.54

Weight (kDa)

9.43

Isoelectric Point (pI)

70.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01040 AT4G01040
fragaria_vesca FvH4_7g16200
malus_domestica MD01G1078600.v1.1 MD07G1147600.v1.1
prunus_persica Prupe.2G185600_v2.0.a1 Prupe.2G185600_v2.0.a1
pyrus_communis pycom01g10710
rosa_chinensis RchiOBHm_Chr1g0359211
rosa_laevigata RLG00000027893
rosa_multiflora Rmu_co8274979.1_g000001 Rmu_ssc0000135.1_g000019
rosa_roxburghii Rroxscaffold_4G00297250
rosa_rugosa Rorug01G0268400
rosa_samantha Rh1AG282300 Rh1BG248700 Rh1CG266500 Rh1DG277700
rosa_wichuraiana Rw1G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 599
Acc36I ACCTGC 1 cut(s) 599
AccB1I GGYRCC 1 cut(s) 405
AccB7I CCANNNNNTGG 3 cut(s) 104, 350, 385
AccII CGCG 1 cut(s) 426
AciI CCGC 3 cut(s) 332, 426, 594
AclWI GGATC 2 cut(s) 334, 347
AcoI YGGCCR 1 cut(s) 531
AcuI CTGAAG 2 cut(s) 54, 464
AcyI GRCGYC 2 cut(s) 400, 406
AdeI CACNNNGTG 1 cut(s) 104
AfiI CCNNNNNNNGG 6 cut(s) 104, 308, 350, 385, 409, 540
AgsI TTSAA 2 cut(s) 56, 510
AjnI CCWGG 2 cut(s) 39, 244
AluBI AGCT 2 cut(s) 164, 185
AluI AGCT 2 cut(s) 164, 185
Alw21I GWGCWC 1 cut(s) 505
AlwI GGATC 2 cut(s) 334, 347
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 2 cut(s) 37, 531
AspLEI GCGC 1 cut(s) 408
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 1 cut(s) 608
AvaI CYCGRG 1 cut(s) 82
BaeGI GKGCMC 1 cut(s) 579
BaeI ACNNNNGTAYC 2 cut(s) 246, 279
BalI TGGCCA 1 cut(s) 533
BamHI GGATCC 1 cut(s) 339
BanI GGYRCC 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 347
Bbv12I GWGCWC 1 cut(s) 505
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BciT130I CCWGG 2 cut(s) 41, 246
BcnI CCSGG 1 cut(s) 410
BfaI CTAG 1 cut(s) 284
BfoI RGCGCY 1 cut(s) 409
BfuAI ACCTGC 1 cut(s) 599
Bme1390I CCNGG 3 cut(s) 41, 246, 410
BmeT110I CYCGRG 1 cut(s) 82
BmiI GGNNCC 3 cut(s) 299, 341, 407
BmrFI CCNGG 3 cut(s) 41, 246, 410
BmsI GCATC 2 cut(s) 321, 437
BpiI GAAGAC 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 410
Bsa29I ATCGAT 1 cut(s) 513
BsaHI GRCGYC 2 cut(s) 400, 406
BsaJI CCNNGG 4 cut(s) 61, 81, 245, 335
BsaWI WCCGGW 1 cut(s) 194
Bsc4I CCNNNNNNNGG 6 cut(s) 104, 308, 350, 385, 409, 540
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 1 cut(s) 461
BseBI CCWGG 2 cut(s) 41, 246
BseCI ATCGAT 1 cut(s) 513
BseDI CCNNGG 4 cut(s) 61, 81, 245, 335
BseGI GGATG 2 cut(s) 312, 452
BseLI CCNNNNNNNGG 6 cut(s) 104, 308, 350, 385, 409, 540
BseNI ACTGG 1 cut(s) 461
BseSI GKGCMC 1 cut(s) 579
BseYI CCCAGC 1 cut(s) 572
BsgI GTGCAG 2 cut(s) 211, 574
Bsh1236I CGCG 1 cut(s) 426
BshFI GGCC 2 cut(s) 39, 533
BshNI GGYRCC 1 cut(s) 405
BshVI ATCGAT 1 cut(s) 513
BsiHKAI GWGCWC 1 cut(s) 505
BsiHKCI CYCGRG 1 cut(s) 82
BsiSI CCGG 3 cut(s) 195, 403, 409
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 6 cut(s) 104, 308, 350, 385, 409, 540
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 2 cut(s) 39, 533
BsoBI CYCGRG 1 cut(s) 82
Bsp1286I GDGCHC 2 cut(s) 505, 579
Bsp143I GATC 1 cut(s) 339
BspACI CCGC 3 cut(s) 332, 426, 594
BspANI GGCC 2 cut(s) 39, 533
BspDI ATCGAT 1 cut(s) 513
BspFNI CGCG 1 cut(s) 426
BspLI GGNNCC 3 cut(s) 299, 341, 407
BspMI ACCTGC 1 cut(s) 599
BspPI GGATC 2 cut(s) 334, 347
BspT107I GGYRCC 1 cut(s) 405
BsrFI RCCGGY 1 cut(s) 402
BsrI ACTGG 1 cut(s) 461
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 4 cut(s) 61, 81, 245, 335
BssMI GATC 1 cut(s) 339
BssNI GRCGYC 2 cut(s) 400, 406
BssT1I CCWWGG 2 cut(s) 61, 335
Bst2UI CCWGG 2 cut(s) 41, 246
Bst4CI ACNGT 3 cut(s) 373, 394, 529
BstACI GRCGYC 2 cut(s) 400, 406
BstAPI GCANNNNNTGC 1 cut(s) 234
BstC8I GCNNGC 3 cut(s) 380, 404, 452
BstDEI CTNAG 2 cut(s) 165, 212
BstF5I GGATG 2 cut(s) 312, 452
BstFNI CGCG 1 cut(s) 426
BstH2I RGCGCY 1 cut(s) 409
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 1 cut(s) 342
BstMBI GATC 1 cut(s) 339
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstNI CCWGG 2 cut(s) 41, 246
BstNSI RCATGY 2 cut(s) 367, 436
BstSCI CCNGG 3 cut(s) 39, 244, 408
BstSLI GKGCMC 1 cut(s) 579
BstUI CGCG 1 cut(s) 426
BstV2I GAAGAC 1 cut(s) 347
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
Bsu15I ATCGAT 1 cut(s) 513
BsuRI GGCC 2 cut(s) 39, 533
BsuTUI ATCGAT 1 cut(s) 513
BtsCI GGATG 2 cut(s) 312, 452
BveI ACCTGC 1 cut(s) 599
Cac8I GCNNGC 3 cut(s) 380, 404, 452
CfoI GCGC 1 cut(s) 408
Cfr10I RCCGGY 1 cut(s) 402
ClaI ATCGAT 1 cut(s) 513
CseI GACGC 3 cut(s) 317, 408, 432
CviAII CATG 3 cut(s) 251, 364, 433
CviJI RGCY 7 cut(s) 39, 87, 164, 185, 292, 533, 572
CviKI_1 RGCY 7 cut(s) 39, 87, 164, 185, 292, 533, 572
DdeI CTNAG 2 cut(s) 165, 212
DinI GGCGCC 1 cut(s) 407
DpnI GATC 1 cut(s) 341
DpnII GATC 1 cut(s) 339
DraIII CACNNNGTG 1 cut(s) 104
EaeI YGGCCR 1 cut(s) 531
EciI GGCGGA 1 cut(s) 321
Eco130I CCWWGG 2 cut(s) 61, 335
Eco57I CTGAAG 2 cut(s) 54, 464
Eco88I CYCGRG 1 cut(s) 82
EcoRII CCWGG 2 cut(s) 39, 244
EcoT14I CCWWGG 2 cut(s) 61, 335
EgeI GGCGCC 1 cut(s) 407
EheI GGCGCC 1 cut(s) 407
ErhI CCWWGG 2 cut(s) 61, 335
FaeI CATG 3 cut(s) 254, 367, 436
FaiI YATR 9 cut(s) 119, 124, 126, 144, 252, 281, 365, 434, 494
FaqI GGGAC 1 cut(s) 252
FatI CATG 3 cut(s) 250, 363, 432
FauNDI CATATG 1 cut(s) 124
FokI GGATG 2 cut(s) 299, 459
FspBI CTAG 1 cut(s) 284
GlaI GCGC 1 cut(s) 407
GsaI CCCAGC 1 cut(s) 576
HaeII RGCGCY 1 cut(s) 409
HaeIII GGCC 2 cut(s) 39, 533
HapII CCGG 3 cut(s) 195, 403, 409
HgaI GACGC 3 cut(s) 317, 408, 432
HhaI GCGC 1 cut(s) 408
Hin1I GRCGYC 2 cut(s) 400, 406
Hin1II CATG 3 cut(s) 254, 367, 436
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HinfI GANTC 2 cut(s) 67, 599
HpaII CCGG 3 cut(s) 195, 403, 409
HphI GGTGA 1 cut(s) 608
Hpy188I TCNGA 2 cut(s) 76, 500
Hpy188III TCNNGA 1 cut(s) 32
HpyAV CCTTC 3 cut(s) 29, 286, 516
HpyCH4III ACNGT 3 cut(s) 373, 394, 529
HpyCH4V TGCA 7 cut(s) 128, 203, 228, 237, 436, 454, 555
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 2 cut(s) 165, 212
Hsp92I GRCGYC 2 cut(s) 400, 406
Hsp92II CATG 3 cut(s) 254, 367, 436
HspAI GCGC 1 cut(s) 406
KasI GGCGCC 1 cut(s) 405
KroI GCCGGC 1 cut(s) 402
KroNI GCCGGC 1 cut(s) 404
Kzo9I GATC 1 cut(s) 339
LweI GCATC 2 cut(s) 321, 437
MaeI CTAG 1 cut(s) 284
MalI GATC 1 cut(s) 341
MboI GATC 1 cut(s) 339
MboII GAAGA 1 cut(s) 347
MfeI CAATTG 2 cut(s) 318, 348
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 2 cut(s) 505, 579
MlsI TGGCCA 1 cut(s) 533
MluCI AATT 3 cut(s) 27, 318, 348
MluNI TGGCCA 1 cut(s) 533
Mly113I GGCGCC 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 4 cut(s) 91, 191, 512, 534
Mox20I TGGCCA 1 cut(s) 533
MreI CGCCGGCG 1 cut(s) 402
MroNI GCCGGC 1 cut(s) 402
MscI TGGCCA 1 cut(s) 533
MseI TTAA 2 cut(s) 48, 147
Msp20I TGGCCA 1 cut(s) 533
MspI CCGG 3 cut(s) 195, 403, 409
MspR9I CCNGG 3 cut(s) 41, 246, 410
MunI CAATTG 2 cut(s) 318, 348
MvaI CCWGG 2 cut(s) 41, 246
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 1 cut(s) 234
NaeI GCCGGC 1 cut(s) 404
NarI GGCGCC 1 cut(s) 406
NciI CCSGG 1 cut(s) 410
NdeI CATATG 1 cut(s) 124
NdeII GATC 1 cut(s) 339
NgoMIV GCCGGC 1 cut(s) 402
NlaIII CATG 3 cut(s) 254, 367, 436
NlaIV GGNNCC 3 cut(s) 299, 341, 407
NspI RCATGY 2 cut(s) 367, 436
PaqCI CACCTGC 1 cut(s) 599
PdiI GCCGGC 1 cut(s) 404
PfeI GAWTC 2 cut(s) 67, 599
PflMI CCANNNNNTGG 3 cut(s) 104, 350, 385
PluTI GGCGCC 1 cut(s) 409
Psp6I CCWGG 2 cut(s) 39, 244
PspFI CCCAGC 1 cut(s) 572
PspGI CCWGG 2 cut(s) 39, 244
PspN4I GGNNCC 3 cut(s) 299, 341, 407
PsuI RGATCY 1 cut(s) 339
SaqAI TTAA 2 cut(s) 48, 147
Sau3AI GATC 1 cut(s) 339
ScrFI CCNGG 3 cut(s) 41, 246, 410
SduI GDGCHC 2 cut(s) 505, 579
SetI ASST 8 cut(s) 83, 166, 187, 202, 213, 247, 508, 593
SfaNI GCATC 2 cut(s) 321, 437
SfoI GGCGCC 1 cut(s) 407
SgrAI CRCCGGYG 1 cut(s) 402
Sse9I AATT 3 cut(s) 27, 318, 348
SsiI CCGC 3 cut(s) 332, 426, 594
SspDI GGCGCC 1 cut(s) 405
SspI AATATT 1 cut(s) 583
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 3 cut(s) 39, 244, 408
StyI CCWWGG 2 cut(s) 61, 335
TaaI ACNGT 3 cut(s) 373, 394, 529
TaqI TCGA 1 cut(s) 513
TasI AATT 3 cut(s) 27, 318, 348
TfiI GAWTC 2 cut(s) 67, 599
Tru1I TTAA 2 cut(s) 48, 147
Tru9I TTAA 2 cut(s) 48, 147
TspDTI ATGAA 2 cut(s) 268, 481
Van91I CCANNNNNTGG 3 cut(s) 104, 350, 385
XceI RCATGY 2 cut(s) 367, 436
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.