Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012509

Physical Location & Seq

Genomic Coordinates Forward (+)

1249971 .. 1251867

Gene Structure 1897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCTGCTTCTGTCGAAACTCCTTCACCTAATCATACGAACAACGAAGGAACACGCTTGAACATGGTTTCTGCAACTTCTTTTGATTCTTCTTCTCCATCGGTTAGTCCATCTTCAGACAAACGTCTCTGGAGCAATGTACGTAACAGGGTTGATGTTCTTCTCGAAGAAAATAGCAAAAATCACAAACCCGTTACCAATACGATTGCTATAGAATCAGAGAGATCAAAGAGATTTAAGAATGATTCGATGCTTTTGCTTAAAGGGTTTGATTCTGTTTCTCATACTCTGTCTCTCCTTTCTAGTAATCTCGACAATGCCCTTCAGGGAGTTAGAGAATTAGCTAAACCACCTTCATATTCTGAGATACTCCATTCGAATCTCAAAGCTGATCAGATTCAACGACAACAGAAAGAAGAAGATGAAGAGGAAGAAGAGAGTAAAGGGAAGAAGAGGAAACACGAATCTGATGTTGAACAAACAGAAGATTCGTCTAATGAAGAAGAGAAGAGACCAAAAGAGAGGAAAATCATGAAGAAGGCTAAGAACATTGCTATATCCATGGCAGCTAAGGCGAATTCGCTTGCAAGAGAGCTTAAAACTATAAAATCAGACCTGAGTTTTATCCAAGAACGTTGTGGGTTGCTTGAAGAAGAGAACAAGAGACTCAGAGATGGGTTTGTGAAAGGTGTTAGACCTGAAGAAGATGATTTGGTGAGGCTACAACTGGAGGTGTTGCTTGCAGAGAAAGCTAGACTAGCGAATGAGAACGCGAATTTAGTTAGGGAAAATCAGTGTCTTCATCAGATGGTTGAGTACCATCAGATTACATCTCAAGATCTATCTCCTTCATATGAACAAGTTGTTCAAGGTTTTTGCTTAGATTTCTCATCCCCTCTGCCTCAATACGATGATGAAGAAGAAGAGCATGAAACAAGAGCTCGAGATGTCTCGAAAGCCCTCAACGAAAGCTTTGAAAAAGCTGAAGAAGAACAATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

333

Amino Acids

37.99

Weight (kDa)

5.14

Isoelectric Point (pI)

65.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02800
fragaria_vesca	FvH4_2g23580 FvH4_2g23580
malus_domestica	MD03G1265000.v1.1 MD11G1285200.v1.1
prunus_persica	Prupe.8G241100_v2.0.a1
pyrus_communis	pycom03g21210 pycom11g25280 pycom11g25340
rosa_chinensis	RchiOBHm_Chr6g0291051
rosa_laevigata	RLG00000012151
rosa_multiflora	Rmu_sc0004642.1_g000003
rosa_roxburghii	Rroxscaffold_7G00176420
rosa_rugosa	Rorug06G0217200
rosa_samantha	Rh6AG327300 Rh6BG334800 Rh6CG341000 Rh6DG328300
rosa_wichuraiana	Rw6G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	773
AclI	AACGTT	1 cut(s)	634
AcsI	RAATTY	2 cut(s)	577, 775
AcuI	CTGAAG	3 cut(s)	99, 308, 720
AfaI	GTAC	2 cut(s)	141, 818
AgsI	TTSAA	6 cut(s)	61, 401, 476, 650, 869, 977
AluBI	AGCT	8 cut(s)	344, 389, 569, 595, 752, 941, 972, 983
AluI	AGCT	8 cut(s)	344, 389, 569, 595, 752, 941, 972, 983
Alw21I	GWGCWC	1 cut(s)	943
Alw26I	GTCTC	5 cut(s)	131, 297, 505, 658, 955
Ama87I	CYCGRG	1 cut(s)	942
ApeKI	GCWGC	2 cut(s)	5, 566
ApoI	RAATTY	2 cut(s)	577, 775
AsuHPI	GGTGA	2 cut(s)	18, 727
AsuII	TTCGAA	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	942
BanII	GRGCYC	1 cut(s)	943
BbsI	GAAGAC	1 cut(s)	791
Bbv12I	GWGCWC	1 cut(s)	943
BbvI	GCAGC	1 cut(s)	578
BccI	CCATC	5 cut(s)	106, 118, 668, 802, 828
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	5 cut(s)	131, 297, 505, 658, 955
BfaI	CTAG	3 cut(s)	303, 753, 758
BfmI	CTRYAG	1 cut(s)	210
BglII	AGATCT	1 cut(s)	838
BisI	GCNGC	2 cut(s)	6, 567
BlsI	GCNGC	2 cut(s)	7, 568
BmeT110I	CYCGRG	1 cut(s)	942
BmsI	GCATC	1 cut(s)	240
BoxI	GACNNNNGTC	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	791
BpmI	CTGGAG	2 cut(s)	151, 749
Bpu10I	CCTNAGC	1 cut(s)	570
Bpu14I	TTCGAA	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	819
BsaAI	YACGTR	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	1 cut(s)	561
Bse1I	ACTGG	1 cut(s)	732
Bse3DI	GCAATG	2 cut(s)	142, 549
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	1 cut(s)	890
BseMI	GCAATG	2 cut(s)	142, 549
BseMII	CTCAG	3 cut(s)	354, 608, 682
BseNI	ACTGG	1 cut(s)	732
BseXI	GCAGC	1 cut(s)	578
Bsh1236I	CGCG	1 cut(s)	773
BsiHKAI	GWGCWC	1 cut(s)	943
BsiHKCI	CYCGRG	1 cut(s)	942
BsmAI	GTCTC	5 cut(s)	131, 297, 505, 658, 955
BsmBI	CGTCTC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	505
BsoBI	CYCGRG	1 cut(s)	942
Bsp119I	TTCGAA	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	943
Bsp143I	GATC	3 cut(s)	224, 391, 838
Bsp19I	CCATGG	1 cut(s)	561
BspCNI	CTCAG	3 cut(s)	355, 609, 681
BspFNI	CGCG	1 cut(s)	773
BspHI	TCATGA	1 cut(s)	531
BspQI	GCTCTTC	1 cut(s)	918
BspT104I	TTCGAA	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	505
BsrDI	GCAATG	2 cut(s)	142, 549
BsrI	ACTGG	1 cut(s)	732
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	3 cut(s)	224, 391, 838
BssT1I	CCWWGG	1 cut(s)	561
Bst6I	CTCTTC	7 cut(s)	420, 429, 446, 498, 503, 648, 918
BstBAI	YACGTR	1 cut(s)	143
BstBI	TTCGAA	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	585, 741
BstDEI	CTNAG	6 cut(s)	363, 543, 570, 617, 668, 880
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	1 cut(s)	890
BstFNI	CGCG	1 cut(s)	773
BstKTI	GATC	3 cut(s)	227, 394, 841
BstMAI	GTCTC	5 cut(s)	131, 297, 505, 658, 955
BstMBI	GATC	3 cut(s)	224, 391, 838
BstMWI	GCNNNNNNNGC	3 cut(s)	572, 749, 758
BstPAI	GACNNNNGTC	1 cut(s)	123
BstSFI	CTRYAG	1 cut(s)	210
BstSNI	TACGTA	1 cut(s)	143
BstUI	CGCG	1 cut(s)	773
BstV1I	GCAGC	1 cut(s)	578
BstV2I	GAAGAC	1 cut(s)	791
BstX2I	RGATCY	1 cut(s)	838
BstYI	RGATCY	1 cut(s)	838
BtgI	CCRYGG	1 cut(s)	561
BtsCI	GGATG	1 cut(s)	890
BtsIMutI	CAGTG	1 cut(s)	800
Cac8I	GCNNGC	2 cut(s)	585, 741
CciI	TCATGA	1 cut(s)	531
Csp6I	GTAC	2 cut(s)	140, 817
CviAII	CATG	4 cut(s)	64, 532, 562, 929
CviQI	GTAC	2 cut(s)	140, 817
DdeI	CTNAG	6 cut(s)	363, 543, 570, 617, 668, 880
DpnI	GATC	3 cut(s)	226, 393, 840
DpnII	GATC	3 cut(s)	224, 391, 838
Eam1104I	CTCTTC	7 cut(s)	420, 429, 446, 498, 503, 648, 918
EarI	CTCTTC	7 cut(s)	420, 429, 446, 498, 503, 648, 918
Ecl136II	GAGCTC	1 cut(s)	941
Eco105I	TACGTA	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	943
Eco31I	GGTCTC	1 cut(s)	505
Eco53kI	GAGCTC	1 cut(s)	941
Eco57I	CTGAAG	3 cut(s)	99, 308, 720
Eco88I	CYCGRG	1 cut(s)	942
EcoICRI	GAGCTC	1 cut(s)	941
EcoRI	GAATTC	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	561
EcoT38I	GRGCYC	1 cut(s)	943
ErhI	CCWWGG	1 cut(s)	561
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	4 cut(s)	67, 535, 565, 932
FatI	CATG	4 cut(s)	63, 531, 561, 928
FauNDI	CATATG	1 cut(s)	853
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	2 cut(s)	6, 567
FokI	GGATG	1 cut(s)	877
FriOI	GRGCYC	1 cut(s)	943
Fsp4HI	GCNGC	2 cut(s)	6, 567
FspBI	CTAG	3 cut(s)	303, 753, 758
GluI	GCNGC	2 cut(s)	6, 567
GsuI	CTGGAG	2 cut(s)	151, 749
Hin1II	CATG	4 cut(s)	67, 535, 565, 932
HindIII	AAGCTT	1 cut(s)	970
HinfI	GANTC	9 cut(s)	86, 215, 245, 272, 379, 397, 464, 488, 666
HphI	GGTGA	2 cut(s)	18, 727
Hpy188I	TCNGA	9 cut(s)	118, 220, 364, 396, 469, 613, 671, 807, 825
Hpy188III	TCNNGA	7 cut(s)	130, 164, 311, 532, 836, 944, 952
HpyAV	CCTTC	6 cut(s)	33, 41, 332, 363, 532, 858
HpyCH4IV	ACGT	3 cut(s)	124, 142, 634
HpyCH4V	TGCA	3 cut(s)	74, 587, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	572, 749, 758
HpyF3I	CTNAG	6 cut(s)	363, 543, 570, 617, 668, 880
HpySE526I	ACGT	3 cut(s)	124, 142, 634
Hsp92II	CATG	4 cut(s)	67, 535, 565, 932
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	224, 391, 838
LguI	GCTCTTC	1 cut(s)	918
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	6 cut(s)	115, 133, 311, 629, 711, 713
Lsp1109I	GCAGC	1 cut(s)	578
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	3 cut(s)	303, 753, 758
MaeII	ACGT	3 cut(s)	124, 142, 634
MaeIII	GTNAC	2 cut(s)	143, 193
MalI	GATC	3 cut(s)	226, 393, 840
MboI	GATC	3 cut(s)	224, 391, 838
MflI	RGATCY	1 cut(s)	838
MhlI	GDGCHC	1 cut(s)	943
MluCI	AATT	3 cut(s)	338, 577, 775
MlyI	GAGTC	1 cut(s)	660
MnlI	CCTC	8 cut(s)	421, 447, 516, 711, 724, 906, 912, 971
MseI	TTAA	3 cut(s)	237, 261, 597
MvnI	CGCG	1 cut(s)	773
MwoI	GCNNNNNNNGC	3 cut(s)	572, 749, 758
NcoI	CCATGG	1 cut(s)	561
NdeI	CATATG	1 cut(s)	853
NdeII	GATC	3 cut(s)	224, 391, 838
NlaIII	CATG	4 cut(s)	67, 535, 565, 932
NspV	TTCGAA	1 cut(s)	377
PaeR7I	CTCGAG	1 cut(s)	942
PagI	TCATGA	1 cut(s)	531
PciSI	GCTCTTC	1 cut(s)	918
PfeI	GAWTC	8 cut(s)	86, 215, 245, 272, 379, 397, 464, 488
PkrI	GCNGC	2 cut(s)	7, 568
PleI	GAGTC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	660
Ppu21I	YACGTR	1 cut(s)	143
PshAI	GACNNNNGTC	1 cut(s)	123
Psp124BI	GAGCTC	1 cut(s)	943
Psp1406I	AACGTT	1 cut(s)	634
PsuI	RGATCY	1 cut(s)	838
RsaI	GTAC	2 cut(s)	141, 818
RsaNI	GTAC	2 cut(s)	140, 817
SacI	GAGCTC	1 cut(s)	943
SapI	GCTCTTC	1 cut(s)	918
SaqAI	TTAA	3 cut(s)	237, 261, 597
SatI	GCNGC	2 cut(s)	6, 567
Sau3AI	GATC	3 cut(s)	224, 391, 838
SchI	GAGTC	1 cut(s)	660
SduI	GDGCHC	1 cut(s)	943
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	210
Sfr274I	CTCGAG	1 cut(s)	942
SfuI	TTCGAA	1 cut(s)	377
SlaI	CTCGAG	1 cut(s)	942
SmlI	CTYRAG	2 cut(s)	834, 942
SmoI	CTYRAG	2 cut(s)	834, 942
SnaBI	TACGTA	1 cut(s)	143
Sse9I	AATT	3 cut(s)	338, 577, 775
SspMI	CTAG	3 cut(s)	303, 753, 758
SstI	GAGCTC	1 cut(s)	943
StyI	CCWWGG	1 cut(s)	561
TaiI	ACGT	3 cut(s)	127, 145, 637
TaqI	TCGA	7 cut(s)	15, 165, 248, 312, 377, 943, 953
TasI	AATT	3 cut(s)	338, 577, 775
TfiI	GAWTC	8 cut(s)	86, 215, 245, 272, 379, 397, 464, 488
Tru1I	TTAA	3 cut(s)	237, 261, 597
Tru9I	TTAA	3 cut(s)	237, 261, 597
TscAI	CASTG	1 cut(s)	800
TseI	GCWGC	2 cut(s)	5, 566
TspDTI	ATGAA	9 cut(s)	345, 438, 513, 548, 791, 840, 870, 930, 945
TspRI	CASTG	1 cut(s)	800
XapI	RAATTY	2 cut(s)	577, 775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	635
XhoI	CTCGAG	1 cut(s)	942
XspI	CTAG	3 cut(s)	303, 753, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.