Rroxscaffold_7G00176420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012509
Physical Location & Seq
Reverse (-)
15891969 .. 15893653
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176420.1

Sequence Viewer

Length: 1068 bp
ATGGCTGCTTCAGTCGACACTCCATCACCAGTTCAACTCAACAAGGACTCCTCCATCTTCTTCACTGCTTCCGCTTCTTCTCCTCTCTTCACTCCCTCCTCCGACAAGCGCTTCTGGAGCTCTCTACAGACCCGAATCGATTCCATTCTCCAAGATCGCAACTCCAGAATCCCAATGGCTCAAAACCCACCACCAAATCCTGATGCTTCTCTACATATGAATGTTGGAGAAGAGAAACGTGGGAGAGGATTGAAGGAAGACTCGATGCTTTTGATGAGAGGGTTTGATTCGATTGCTCACACTCTGTCTCAGCTGTCTGACACTTTAGACAATGCTCTTCAGGGAGCTAATGATCTAGCGAAGCCACCCACATTGACAGAGATATTCCACAGCCAATTGAGCAACTCAGAGAGCAAAGAGGAGGGCTCAGAAGAACAACAACAGAACGCAGAAGAGTCTCATGTAGGATTGAAGAGGAAGTACGACAACAGTCATTGCTTAGAGGAACAAGGAGATGGTGATGATTCACAACATGAAAATGAGCAAGGCCCAAAAGATGGGAAGCTGAAGAAAGCCAAAAATCTGGCGATTTCTATGGCGACGAAGGCGGCTTCATTTGCTAGGGAACTCAAGTTGATTAGGTCGGATTTATCGTTCATGCAAGAGCGGTGTGCTTTGCTGGAGGAGGAGAATAGGAGGCTCAGAGATGGATTTGACAAGGGGTTGAGGCCTGAGGAAGATGATTTAGTGAGGCTTCAATTGGAGGCACTGCTAGCTGAGAAATCAAGATTAGCAAATGAGAATGCAAATCTGGTTAGAGAAAACCAATGCCTCCACCAACTTGTGGAGTACCACCAGCTTACCTCTCAAGACCTGTCTGCTTCATCATATGAACAAGTTATACAAGGGTTATGCTTAGACTTCTCGTCTCCACCGCCACCAATACCAGAAGAGGAGGCAGCAAACGACGAAGAGAGTTTAGAATCTGAAGATGATGCAACAACCCCAAGAACTAATCTTTTTGGCTTGCACTCATCTTTTGATGAGCATTATCAAGGAGATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

39.6

Weight (kDa)

4.69

Isoelectric Point (pI)

59.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012509)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02800
fragaria_vesca FvH4_2g23580 FvH4_2g23580
malus_domestica MD03G1265000.v1.1 MD11G1285200.v1.1
prunus_persica Prupe.8G241100_v2.0.a1
pyrus_communis pycom03g21210 pycom11g25280 pycom11g25340
rosa_chinensis RchiOBHm_Chr6g0291051
rosa_laevigata RLG00000012151
rosa_multiflora Rmu_sc0004642.1_g000003
rosa_roxburghii Rroxscaffold_7G00176420
rosa_rugosa Rorug06G0217200
rosa_samantha Rh6AG327300 Rh6BG334800 Rh6CG341000 Rh6DG328300
rosa_wichuraiana Rw6G028470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 557, 844
AccBSI CCGCTC 1 cut(s) 667
AccI GTMKAC 1 cut(s) 15
AciI CCGC 4 cut(s) 72, 608, 667, 935
AcuI CTGAAG 3 cut(s) 323, 587, 1008
AfaI GTAC 2 cut(s) 482, 851
AfeI AGCGCT 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 557, 844
AgsI TTSAA 4 cut(s) 35, 253, 472, 758
AhdI GACNNNNNGTC 1 cut(s) 925
AloI GAACNNNNNNTCC 2 cut(s) 638, 670
AluBI AGCT 6 cut(s) 120, 313, 347, 565, 776, 859
AluI AGCT 6 cut(s) 120, 313, 347, 565, 776, 859
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 3 cut(s) 312, 462, 933
Aor51HI AGCGCT 1 cut(s) 110
AoxI GGCC 2 cut(s) 547, 728
ApeKI GCWGC 2 cut(s) 5, 959
Asp700I GAANNNNTTC 1 cut(s) 139
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 548
AsuHPI GGTGA 2 cut(s) 18, 530
AsuNHI GCTAGC 1 cut(s) 772
AxyI CCTNAGG 1 cut(s) 732
BanII GRGCYC 2 cut(s) 122, 428
BarI GAAGNNNNNNTAC 2 cut(s) 464, 496
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 971
BccI CCATC 5 cut(s) 31, 62, 509, 551, 701
BcoDI GTCTC 3 cut(s) 312, 462, 933
BfaI CTAG 3 cut(s) 356, 621, 773
BfmI CTRYAG 1 cut(s) 125
BfoI RGCGCY 1 cut(s) 112
BisI GCNGC 3 cut(s) 6, 609, 960
BlsI GCNGC 3 cut(s) 7, 610, 961
BmeRI GACNNNNNGTC 1 cut(s) 925
BmgT120I GGNCC 1 cut(s) 548
BmsI GCATC 3 cut(s) 193, 255, 985
BmtI GCTAGC 1 cut(s) 776
BoxI GACNNNNGTC 1 cut(s) 489
BpiI GAAGAC 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 410, 442
BpmI CTGGAG 3 cut(s) 136, 148, 701
BpuEI CTTGAG 2 cut(s) 614, 852
Bsa29I ATCGAT 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 2 cut(s) 557, 844
Bse1I ACTGG 1 cut(s) 29
Bse21I CCTNAGG 1 cut(s) 732
Bse3DI GCAATG 1 cut(s) 493
BseCI ATCGAT 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 557, 844
BseMI GCAATG 1 cut(s) 493
BseMII CTCAG 6 cut(s) 323, 420, 441, 715, 723, 768
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 7 cut(s) 40, 72, 88, 434, 698, 701, 968
BseXI GCAGC 1 cut(s) 971
BshFI GGCC 2 cut(s) 549, 730
BshVI ATCGAT 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 557, 844
BsmAI GTCTC 3 cut(s) 312, 462, 933
BsmBI CGTCTC 1 cut(s) 933
BsmI GAATGC 1 cut(s) 808
BsnI GGCC 2 cut(s) 549, 730
Bsp1286I GDGCHC 2 cut(s) 122, 428
Bsp143I GATC 2 cut(s) 154, 352
BspACI CCGC 4 cut(s) 72, 608, 667, 935
BspANI GGCC 2 cut(s) 549, 730
BspCNI CTCAG 6 cut(s) 322, 419, 440, 714, 724, 769
BspDI ATCGAT 1 cut(s) 138
BspOI GCTAGC 1 cut(s) 776
BspQI GCTCTTC 1 cut(s) 342
BsrBI CCGCTC 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 493
BsrI ACTGG 1 cut(s) 29
BssMI GATC 2 cut(s) 154, 352
Bst4CI ACNGT 1 cut(s) 491
Bst6I CTCTTC 7 cut(s) 92, 225, 342, 447, 467, 945, 966
BstC8I GCNNGC 2 cut(s) 774, 1028
BstDEI CTNAG 8 cut(s) 309, 406, 427, 499, 701, 732, 777, 916
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 2 cut(s) 157, 355
BstMAI GTCTC 3 cut(s) 312, 462, 933
BstMBI GATC 2 cut(s) 154, 352
BstMWI GCNNNNNNNGC 5 cut(s) 117, 399, 605, 617, 773
BstPAI GACNNNNGTC 1 cut(s) 489
BstSFI CTRYAG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 971
BstV2I GAAGAC 1 cut(s) 264
BstXI CCANNNNNNTGG 1 cut(s) 583
Bsu15I ATCGAT 1 cut(s) 138
Bsu36I CCTNAGG 1 cut(s) 732
BsuRI GGCC 2 cut(s) 549, 730
BsuTUI ATCGAT 1 cut(s) 138
BtsI GCAGTG 2 cut(s) 63, 767
BtsIMutI CAGTG 2 cut(s) 63, 767
Cac8I GCNNGC 2 cut(s) 774, 1028
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 548
ClaI ATCGAT 1 cut(s) 138
Csp6I GTAC 2 cut(s) 481, 850
CspCI CAANNNNNGTGG 2 cut(s) 354, 389
CviAII CATG 3 cut(s) 461, 533, 658
CviQI GTAC 2 cut(s) 481, 850
DdeI CTNAG 8 cut(s) 309, 406, 427, 499, 701, 732, 777, 916
DpnI GATC 2 cut(s) 156, 354
DpnII GATC 2 cut(s) 154, 352
DriI GACNNNNNGTC 1 cut(s) 925
Eam1104I CTCTTC 7 cut(s) 92, 225, 342, 447, 467, 945, 966
Eam1105I GACNNNNNGTC 1 cut(s) 925
EarI CTCTTC 7 cut(s) 92, 225, 342, 447, 467, 945, 966
Ecl136II GAGCTC 1 cut(s) 120
Eco147I AGGCCT 1 cut(s) 730
Eco24I GRGCYC 2 cut(s) 122, 428
Eco47III AGCGCT 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 120
Eco57I CTGAAG 3 cut(s) 323, 587, 1008
Eco81I CCTNAGG 1 cut(s) 732
EcoICRI GAGCTC 1 cut(s) 120
EcoT38I GRGCYC 2 cut(s) 122, 428
Esp3I CGTCTC 1 cut(s) 933
FaeI CATG 3 cut(s) 464, 536, 661
FatI CATG 3 cut(s) 460, 532, 657
FauNDI CATATG 2 cut(s) 216, 889
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 3 cut(s) 6, 609, 960
FriOI GRGCYC 2 cut(s) 122, 428
Fsp4HI GCNGC 3 cut(s) 6, 609, 960
FspBI CTAG 3 cut(s) 356, 621, 773
GlaI GCGC 1 cut(s) 110
GluI GCNGC 3 cut(s) 6, 609, 960
GsuI CTGGAG 3 cut(s) 136, 148, 701
HaeII RGCGCY 1 cut(s) 112
HaeIII GGCC 2 cut(s) 549, 730
HhaI GCGC 1 cut(s) 111
Hin1II CATG 3 cut(s) 464, 536, 661
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 9 cut(s) 47, 135, 140, 168, 260, 287, 455, 524, 983
HphI GGTGA 2 cut(s) 18, 530
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 7 cut(s) 103, 319, 409, 430, 646, 704, 988
Hpy188III TCNNGA 5 cut(s) 115, 165, 200, 786, 869
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 2 cut(s) 604, 971
HpyAV CCTTC 2 cut(s) 247, 598
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 4 cut(s) 661, 806, 998, 1030
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 399, 605, 617, 773
HpyF3I CTNAG 8 cut(s) 309, 406, 427, 499, 701, 732, 777, 916
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 3 cut(s) 464, 536, 661
HspAI GCGC 1 cut(s) 109
Kzo9I GATC 2 cut(s) 154, 352
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 2 cut(s) 117, 344
Lsp1109I GCAGC 1 cut(s) 971
LweI GCATC 3 cut(s) 193, 255, 985
MaeI CTAG 3 cut(s) 356, 621, 773
MaeII ACGT 1 cut(s) 238
MalI GATC 2 cut(s) 156, 354
MbiI CCGCTC 1 cut(s) 667
MboI GATC 2 cut(s) 154, 352
MfeI CAATTG 2 cut(s) 395, 758
MhlI GDGCHC 2 cut(s) 122, 428
MluCI AATT 2 cut(s) 395, 758
MlyI GAGTC 3 cut(s) 41, 254, 464
MmeI TCCRAC 3 cut(s) 126, 205, 624
MroXI GAANNNNTTC 1 cut(s) 139
MslI CAYNNNNRTG 2 cut(s) 219, 537
MspA1I CMGCKG 1 cut(s) 313
MunI CAATTG 2 cut(s) 395, 758
Mva1269I GAATGC 1 cut(s) 808
MwoI GCNNNNNNNGC 5 cut(s) 117, 399, 605, 617, 773
NdeI CATATG 2 cut(s) 216, 889
NdeII GATC 2 cut(s) 154, 352
NheI GCTAGC 1 cut(s) 772
NlaIII CATG 3 cut(s) 464, 536, 661
PceI AGGCCT 1 cut(s) 730
PciSI GCTCTTC 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 650
PctI GAATGC 1 cut(s) 808
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 6 cut(s) 135, 140, 168, 287, 524, 983
PflMI CCANNNNNTGG 2 cut(s) 557, 844
PkrI GCNGC 3 cut(s) 7, 610, 961
PleI GAGTC 3 cut(s) 41, 254, 463
PpsI GAGTC 3 cut(s) 41, 254, 463
PshAI GACNNNNGTC 1 cut(s) 489
Psp124BI GAGCTC 1 cut(s) 122
PspPI GGNCC 1 cut(s) 548
PsrI GAACNNNNNNTAC 2 cut(s) 885, 917
PvuII CAGCTG 1 cut(s) 313
RsaI GTAC 2 cut(s) 482, 851
RsaNI GTAC 2 cut(s) 481, 850
RseI CAYNNNNRTG 2 cut(s) 219, 537
SacI GAGCTC 1 cut(s) 122
SalI GTCGAC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 342
SatI GCNGC 3 cut(s) 6, 609, 960
Sau3AI GATC 2 cut(s) 154, 352
Sau96I GGNCC 1 cut(s) 548
SchI GAGTC 3 cut(s) 41, 254, 464
SduI GDGCHC 2 cut(s) 122, 428
SfaNI GCATC 3 cut(s) 193, 255, 985
SfcI CTRYAG 1 cut(s) 125
SmiMI CAYNNNNRTG 2 cut(s) 219, 537
SmlI CTYRAG 2 cut(s) 629, 867
SmoI CTYRAG 2 cut(s) 629, 867
Sse9I AATT 2 cut(s) 395, 758
SseBI AGGCCT 1 cut(s) 730
SsiI CCGC 4 cut(s) 72, 608, 667, 935
SspMI CTAG 3 cut(s) 356, 621, 773
SstI GAGCTC 1 cut(s) 122
StuI AGGCCT 1 cut(s) 730
TaaI ACNGT 1 cut(s) 491
TaiI ACGT 1 cut(s) 241
TaqI TCGA 4 cut(s) 15, 138, 263, 290
TasI AATT 2 cut(s) 395, 758
TauI GCSGC 1 cut(s) 611
TfiI GAWTC 6 cut(s) 135, 140, 168, 287, 524, 983
TscAI CASTG 2 cut(s) 70, 774
TseI GCWGC 2 cut(s) 5, 959
TspDTI ATGAA 6 cut(s) 233, 549, 603, 646, 873, 906
TspRI CASTG 2 cut(s) 70, 774
Van91I CCANNNNNTGG 2 cut(s) 557, 844
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 139
XspI CTAG 3 cut(s) 356, 621, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.