RchiOBHm_Chr6g0291051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012509
Physical Location & Seq
Forward (+)
54247391 .. 54249258
1868 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26115

Sequence Viewer

Length: 1062 bp
ATGGCTGCTTCAGTCGACACCCCATCACCAGTTCAACTCAACAAGGACTCCTCCATCTTCTTCACTGCTTCCGCGTCTTCTCCTCTCTTCACTCCCTCCTCCGATAAGCGCTTCTGGAGCTCTCTACAGACCCGAATCGATTCCATTCTCCAAGATCGCAACTCCAGAATCCCAATGGCTCAAAACCCACCAAATCCTGATCCTTCTCCACATATGAATGTTGGAGAAGCGAAACGTGGGAGAGGATTGAAGGAAGACTCGATGCTTTTGATGAGAGGGTTTGATTCCATTGCTCACACTCTGTCTCAGCTGTCTGACACTTTAGACAATGCTCTTCAGGGAGCTAATGATCTAGCTAAGCCACCCACATTGACAGAGATATTCCACAGCCAATTGAGCAACTCAGAGGAGGAGGGCTCAGAAGAACAACAACAACAGAACGCAGAAGAGTCTCATGTAGGGTTGAAGAGGAAGTACGACAACAGTCATTGCTTAGAGGAACAAGGAGATGGTGATGATTCACAACATGAAAATGAGCAAGGCCCAAAAGATGGGAAGCTGAAGAAAGCCAAAAATCTGGCGATTTCTATGGCAACAAAGGCGGCTTCGTTTGCTAGGGAACTCAAGTTGATTAGGTCGGATTTATCGTTTATGCAAGAGCGGTGTGCTTTGCTGGAGGAGGAGAATAGGAGGCTCAGAGATGGATTTGACAAGGGGTTGAGGCCTGAGGAAGATGATTTGGTGAGGCTTCAATTGGAGGCACTGCTAGCTGAGAAATCAAGATTAGCAAATGAGAATGCAAATCTGGTTAGAGAAAACCAATGCCTACACCAACTTGTGGAGTACCACCAGCTTACCTCTCAAGACCTGTCTGCTTCATCATACGAACAAGTTATACAAGGGTTGTGCTTGGACTTCTCGTCTCCACCGCCACCAATACCAGAAGAGGAGGCAGCAAACGACGAAGAGAGTGTAGAATCTGAAGATGATGCAACAACCCCAAGAACTAATCTTTTTGGCTTACACTCATCTTTTGATGAGCATTATCAAGGAGATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

353

Amino Acids

39.35

Weight (kDa)

4.68

Isoelectric Point (pI)

61.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012509)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02800
fragaria_vesca FvH4_2g23580 FvH4_2g23580
malus_domestica MD03G1265000.v1.1 MD11G1285200.v1.1
prunus_persica Prupe.8G241100_v2.0.a1
pyrus_communis pycom03g21210 pycom11g25280 pycom11g25340
rosa_chinensis RchiOBHm_Chr6g0291051
rosa_laevigata RLG00000012151
rosa_multiflora Rmu_sc0004642.1_g000003
rosa_roxburghii Rroxscaffold_7G00176420
rosa_rugosa Rorug06G0217200
rosa_samantha Rh6AG327300 Rh6BG334800 Rh6CG341000 Rh6DG328300
rosa_wichuraiana Rw6G028470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 551, 838
AccBSI CCGCTC 1 cut(s) 661
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 74
AciI CCGC 4 cut(s) 72, 602, 661, 929
AclWI GGATC 1 cut(s) 194
AcuI CTGAAG 3 cut(s) 320, 581, 1002
AfaI GTAC 2 cut(s) 476, 845
AfeI AGCGCT 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 551, 838
AgsI TTSAA 4 cut(s) 35, 250, 466, 752
AhdI GACNNNNNGTC 1 cut(s) 919
AluBI AGCT 7 cut(s) 120, 310, 344, 356, 559, 770, 853
AluI AGCT 7 cut(s) 120, 310, 344, 356, 559, 770, 853
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 3 cut(s) 309, 456, 927
AlwI GGATC 1 cut(s) 194
Aor51HI AGCGCT 1 cut(s) 110
AoxI GGCC 2 cut(s) 541, 722
ApeKI GCWGC 2 cut(s) 5, 953
Asp700I GAANNNNTTC 1 cut(s) 139
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 542
AsuHPI GGTGA 3 cut(s) 18, 524, 754
AsuNHI GCTAGC 1 cut(s) 766
AxyI CCTNAGG 1 cut(s) 726
BanII GRGCYC 2 cut(s) 122, 419
BarI GAAGNNNNNNTAC 2 cut(s) 458, 490
BbsI GAAGAC 2 cut(s) 69, 261
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 965
BccI CCATC 5 cut(s) 31, 62, 503, 545, 695
BcoDI GTCTC 3 cut(s) 309, 456, 927
BfaI CTAG 3 cut(s) 353, 615, 767
BfmI CTRYAG 1 cut(s) 125
BfoI RGCGCY 1 cut(s) 112
BisI GCNGC 3 cut(s) 6, 603, 954
BlpI GCTNAGC 1 cut(s) 357
BlsI GCNGC 3 cut(s) 7, 604, 955
BmeRI GACNNNNNGTC 1 cut(s) 919
BmgT120I GGNCC 1 cut(s) 542
BmsI GCATC 2 cut(s) 252, 979
BmtI GCTAGC 1 cut(s) 770
BoxI GACNNNNGTC 1 cut(s) 483
BpiI GAAGAC 2 cut(s) 69, 261
BplI GAGNNNNNCTC 2 cut(s) 401, 433
BpmI CTGGAG 3 cut(s) 136, 148, 695
Bpu1102I GCTNAGC 1 cut(s) 357
BpuEI CTTGAG 2 cut(s) 608, 846
Bsa29I ATCGAT 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 2 cut(s) 551, 838
Bse1I ACTGG 1 cut(s) 29
Bse21I CCTNAGG 1 cut(s) 726
Bse3DI GCAATG 2 cut(s) 288, 487
BseCI ATCGAT 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 551, 838
BseMI GCAATG 2 cut(s) 288, 487
BseMII CTCAG 6 cut(s) 320, 417, 432, 709, 717, 762
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 8 cut(s) 40, 72, 88, 422, 425, 692, 695, 962
BseXI GCAGC 1 cut(s) 965
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 2 cut(s) 543, 724
BshVI ATCGAT 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 551, 838
BsmAI GTCTC 3 cut(s) 309, 456, 927
BsmBI CGTCTC 1 cut(s) 927
BsmI GAATGC 1 cut(s) 802
BsnI GGCC 2 cut(s) 543, 724
Bsp1286I GDGCHC 2 cut(s) 122, 419
Bsp143I GATC 3 cut(s) 154, 199, 349
Bsp1720I GCTNAGC 1 cut(s) 357
BspACI CCGC 4 cut(s) 72, 602, 661, 929
BspANI GGCC 2 cut(s) 543, 724
BspCNI CTCAG 6 cut(s) 319, 416, 431, 708, 718, 763
BspDI ATCGAT 1 cut(s) 138
BspFNI CGCG 1 cut(s) 74
BspOI GCTAGC 1 cut(s) 770
BspPI GGATC 1 cut(s) 194
BspQI GCTCTTC 1 cut(s) 339
BsrBI CCGCTC 1 cut(s) 661
BsrDI GCAATG 2 cut(s) 288, 487
BsrI ACTGG 1 cut(s) 29
BssMI GATC 3 cut(s) 154, 199, 349
Bst4CI ACNGT 1 cut(s) 485
Bst6I CTCTTC 6 cut(s) 92, 339, 441, 461, 939, 960
BstC8I GCNNGC 1 cut(s) 768
BstDEI CTNAG 8 cut(s) 306, 357, 403, 418, 493, 695, 726, 771
BstFNI CGCG 1 cut(s) 74
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 3 cut(s) 157, 202, 352
BstMAI GTCTC 3 cut(s) 309, 456, 927
BstMBI GATC 3 cut(s) 154, 199, 349
BstMWI GCNNNNNNNGC 5 cut(s) 117, 396, 599, 611, 767
BstPAI GACNNNNGTC 1 cut(s) 483
BstSFI CTRYAG 1 cut(s) 125
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 965
BstV2I GAAGAC 2 cut(s) 69, 261
BstXI CCANNNNNNTGG 1 cut(s) 577
Bsu15I ATCGAT 1 cut(s) 138
Bsu36I CCTNAGG 1 cut(s) 726
BsuRI GGCC 2 cut(s) 543, 724
BsuTUI ATCGAT 1 cut(s) 138
BtsI GCAGTG 2 cut(s) 63, 761
BtsIMutI CAGTG 2 cut(s) 63, 761
Cac8I GCNNGC 1 cut(s) 768
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 542
ClaI ATCGAT 1 cut(s) 138
CseI GACGC 1 cut(s) 63
Csp6I GTAC 2 cut(s) 475, 844
CspCI CAANNNNNGTGG 2 cut(s) 351, 386
CviAII CATG 2 cut(s) 455, 527
CviQI GTAC 2 cut(s) 475, 844
DdeI CTNAG 8 cut(s) 306, 357, 403, 418, 493, 695, 726, 771
DpnI GATC 3 cut(s) 156, 201, 351
DpnII GATC 3 cut(s) 154, 199, 349
DriI GACNNNNNGTC 1 cut(s) 919
Eam1104I CTCTTC 6 cut(s) 92, 339, 441, 461, 939, 960
Eam1105I GACNNNNNGTC 1 cut(s) 919
EarI CTCTTC 6 cut(s) 92, 339, 441, 461, 939, 960
Ecl136II GAGCTC 1 cut(s) 120
Eco147I AGGCCT 1 cut(s) 724
Eco24I GRGCYC 2 cut(s) 122, 419
Eco47III AGCGCT 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 120
Eco57I CTGAAG 3 cut(s) 320, 581, 1002
Eco81I CCTNAGG 1 cut(s) 726
EcoICRI GAGCTC 1 cut(s) 120
EcoT38I GRGCYC 2 cut(s) 122, 419
Esp3I CGTCTC 1 cut(s) 927
FaeI CATG 2 cut(s) 458, 530
FaiI YATR 8 cut(s) 213, 215, 456, 528, 590, 653, 883, 896
FatI CATG 2 cut(s) 454, 526
FauNDI CATATG 1 cut(s) 213
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 3 cut(s) 6, 603, 954
FriOI GRGCYC 2 cut(s) 122, 419
Fsp4HI GCNGC 3 cut(s) 6, 603, 954
FspBI CTAG 3 cut(s) 353, 615, 767
GlaI GCGC 1 cut(s) 110
GluI GCNGC 3 cut(s) 6, 603, 954
GsuI CTGGAG 3 cut(s) 136, 148, 695
HaeII RGCGCY 1 cut(s) 112
HaeIII GGCC 2 cut(s) 543, 724
HgaI GACGC 1 cut(s) 63
HhaI GCGC 1 cut(s) 111
Hin1II CATG 2 cut(s) 458, 530
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 9 cut(s) 47, 135, 140, 168, 257, 284, 449, 518, 977
HphI GGTGA 3 cut(s) 18, 524, 754
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 7 cut(s) 103, 316, 406, 421, 640, 698, 982
Hpy188III TCNNGA 5 cut(s) 115, 165, 197, 780, 863
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 965
HpyAV CCTTC 2 cut(s) 213, 244
HpyCH4III ACNGT 1 cut(s) 485
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 655, 800, 992
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 396, 599, 611, 767
HpyF3I CTNAG 8 cut(s) 306, 357, 403, 418, 493, 695, 726, 771
HpySE526I ACGT 1 cut(s) 235
Hsp92II CATG 2 cut(s) 458, 530
HspAI GCGC 1 cut(s) 109
Kzo9I GATC 3 cut(s) 154, 199, 349
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 2 cut(s) 117, 341
Lsp1109I GCAGC 1 cut(s) 965
LweI GCATC 2 cut(s) 252, 979
MaeI CTAG 3 cut(s) 353, 615, 767
MaeII ACGT 1 cut(s) 235
MalI GATC 3 cut(s) 156, 201, 351
MbiI CCGCTC 1 cut(s) 661
MboI GATC 3 cut(s) 154, 199, 349
MfeI CAATTG 2 cut(s) 392, 752
MhlI GDGCHC 2 cut(s) 122, 419
MluCI AATT 2 cut(s) 392, 752
MlyI GAGTC 3 cut(s) 41, 251, 458
MmeI TCCRAC 2 cut(s) 202, 618
MroXI GAANNNNTTC 1 cut(s) 139
MslI CAYNNNNRTG 2 cut(s) 216, 531
MspA1I CMGCKG 1 cut(s) 310
MunI CAATTG 2 cut(s) 392, 752
Mva1269I GAATGC 1 cut(s) 802
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 5 cut(s) 117, 396, 599, 611, 767
NdeI CATATG 1 cut(s) 213
NdeII GATC 3 cut(s) 154, 199, 349
NheI GCTAGC 1 cut(s) 766
NlaIII CATG 2 cut(s) 458, 530
PceI AGGCCT 1 cut(s) 724
PciSI GCTCTTC 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 644
PctI GAATGC 1 cut(s) 802
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 6 cut(s) 135, 140, 168, 284, 518, 977
PflMI CCANNNNNTGG 2 cut(s) 551, 838
PkrI GCNGC 3 cut(s) 7, 604, 955
PleI GAGTC 3 cut(s) 41, 251, 457
PpsI GAGTC 3 cut(s) 41, 251, 457
PshAI GACNNNNGTC 1 cut(s) 483
Psp124BI GAGCTC 1 cut(s) 122
PspPI GGNCC 1 cut(s) 542
PsrI GAACNNNNNNTAC 2 cut(s) 879, 911
PvuII CAGCTG 1 cut(s) 310
RsaI GTAC 2 cut(s) 476, 845
RsaNI GTAC 2 cut(s) 475, 844
RseI CAYNNNNRTG 2 cut(s) 216, 531
SacI GAGCTC 1 cut(s) 122
SalI GTCGAC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 339
SatI GCNGC 3 cut(s) 6, 603, 954
Sau3AI GATC 3 cut(s) 154, 199, 349
Sau96I GGNCC 1 cut(s) 542
SchI GAGTC 3 cut(s) 41, 251, 458
SduI GDGCHC 2 cut(s) 122, 419
SfaNI GCATC 2 cut(s) 252, 979
SfcI CTRYAG 1 cut(s) 125
SmiMI CAYNNNNRTG 2 cut(s) 216, 531
SmlI CTYRAG 2 cut(s) 623, 861
SmoI CTYRAG 2 cut(s) 623, 861
Sse9I AATT 2 cut(s) 392, 752
SseBI AGGCCT 1 cut(s) 724
SsiI CCGC 4 cut(s) 72, 602, 661, 929
SspMI CTAG 3 cut(s) 353, 615, 767
SstI GAGCTC 1 cut(s) 122
StuI AGGCCT 1 cut(s) 724
TaaI ACNGT 1 cut(s) 485
TaiI ACGT 1 cut(s) 238
TaqI TCGA 3 cut(s) 15, 138, 260
TasI AATT 2 cut(s) 392, 752
TauI GCSGC 1 cut(s) 605
TfiI GAWTC 6 cut(s) 135, 140, 168, 284, 518, 977
TscAI CASTG 2 cut(s) 70, 768
TseI GCWGC 2 cut(s) 5, 953
TspDTI ATGAA 3 cut(s) 230, 543, 867
TspRI CASTG 2 cut(s) 70, 768
Van91I CCANNNNNTGG 2 cut(s) 551, 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 139
XspI CTAG 3 cut(s) 353, 615, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.