Rh6AG327300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0012509
Physical Location & Seq
Forward (+)
52956718 .. 52958184
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG327300.1

Sequence Viewer

Length: 1020 bp
ATGGCTGCTTCAGTCGACACCCCATCACCAGTTCAACTCAACAAGGAGGACTCCTCCATCTTCTTCACTGCTTCCGCTTCTTCTCCTCTCTTCACTCCCTCCTCCGATAAGCGCTTCTGGAGCTCTCTACAGACCCGAATCGATTCCATTCTCCAAGATCGCAACTCCAGAATCCCAATGAATGTTGGAGAAGCGAAACGTGGGAGAGGATTGAAGGAAGACTCGATGCTTTTGATGAGAGGGTTTGATTCGATTGCTCACACTCTGTCTCAGCTGTCTGACACTTTAGACAATGCTCTTCACGGAGCTAATGATCTAGCTAAGCCACCCACATTGACAGAGATATTCCACAGCCAATTGAGCAACTCAGAGGAGGGCTCAGAAGAACAACAACAGAACGCAGAAGAGTCTCATGTAGGGCTGAAGAGGAAGTACGACAACAGTCATTGCTTAGAGGAACAAGGAGATGGTGATGATTCACAACATGAAAATGAGCAAGGCCCAAAAGATGGGAAGCTGAAAAAAGCCAAAAATCTGGCGATTTCTATGGCAACAAAGGCGGCTTCGTTTGCTAGGGAACTCAAGTTGATTAGGTCGGATTTATCGTTTATGCAAGAGCGGTGTGCTTTGCTGGAGGAGGAGAATAGGAGGCTCAGAGATGGATTTGACAAGGGGTTGAGGCCTGAGGAAGATGATTTGGTGAGGCTTCAATTGGAGGCACTGCTAGCTGAGAAATCAAGATTAGCAAATGAGAATGCAAATCTGGTTAGAGAAAACCAATGCCTACACCAACTTGTGGAGTACCACCAGCTTACCTCTCAAGACCTGTCTGCTTCATCATACGAACAAGTTATACAAGGGTTGTGCTTGGACTTCTCATCTCCACCGCCACCAATACCAGAAGAGGAGGCAGCAAACGACGAAGAGAGTGTAGAATCTGAAGACGATGCAACAACCCCAAGAACTAATCTTTTTGGCTTACACTCATCTTTTGATGAGCATTATCAAGGAGATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

339

Amino Acids

37.85

Weight (kDa)

4.7

Isoelectric Point (pI)

58.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012509)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02800
fragaria_vesca FvH4_2g23580 FvH4_2g23580
malus_domestica MD03G1265000.v1.1 MD11G1285200.v1.1
prunus_persica Prupe.8G241100_v2.0.a1
pyrus_communis pycom03g21210 pycom11g25280 pycom11g25340
rosa_chinensis RchiOBHm_Chr6g0291051
rosa_laevigata RLG00000012151
rosa_multiflora Rmu_sc0004642.1_g000003
rosa_roxburghii Rroxscaffold_7G00176420
rosa_rugosa Rorug06G0217200
rosa_samantha Rh6AG327300 Rh6BG334800 Rh6CG341000 Rh6DG328300
rosa_wichuraiana Rw6G028470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 509, 796
AccBSI CCGCTC 1 cut(s) 619
AccI GTMKAC 1 cut(s) 15
AciI CCGC 4 cut(s) 75, 560, 619, 887
AcuI CTGAAG 2 cut(s) 443, 960
AfaI GTAC 2 cut(s) 434, 803
AfeI AGCGCT 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 509, 796
AgsI TTSAA 3 cut(s) 35, 214, 710
AluBI AGCT 7 cut(s) 123, 274, 308, 320, 517, 728, 811
AluI AGCT 7 cut(s) 123, 274, 308, 320, 517, 728, 811
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 2 cut(s) 273, 414
Aor51HI AGCGCT 1 cut(s) 113
AoxI GGCC 2 cut(s) 499, 680
ApeKI GCWGC 2 cut(s) 5, 911
Asp700I GAANNNNTTC 1 cut(s) 142
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 500
AsuHPI GGTGA 3 cut(s) 18, 482, 712
AsuNHI GCTAGC 1 cut(s) 724
AxyI CCTNAGG 1 cut(s) 684
BanII GRGCYC 2 cut(s) 125, 380
BarI GAAGNNNNNNTAC 2 cut(s) 416, 448
BbsI GAAGAC 2 cut(s) 225, 948
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 923
BccI CCATC 5 cut(s) 31, 65, 461, 503, 653
BcoDI GTCTC 2 cut(s) 273, 414
BfaI CTAG 3 cut(s) 317, 573, 725
BfmI CTRYAG 1 cut(s) 128
BfoI RGCGCY 1 cut(s) 115
BisI GCNGC 3 cut(s) 6, 561, 912
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 3 cut(s) 7, 562, 913
BmgT120I GGNCC 1 cut(s) 500
BmsI GCATC 2 cut(s) 216, 937
BmtI GCTAGC 1 cut(s) 728
BoxI GACNNNNGTC 1 cut(s) 441
BpiI GAAGAC 2 cut(s) 225, 948
BplI GAGNNNNNCTC 4 cut(s) 38, 70, 362, 394
BpmI CTGGAG 3 cut(s) 139, 151, 653
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 2 cut(s) 566, 804
Bsa29I ATCGAT 1 cut(s) 141
Bsc4I CCNNNNNNNGG 2 cut(s) 509, 796
Bse1I ACTGG 1 cut(s) 29
Bse21I CCTNAGG 1 cut(s) 684
Bse3DI GCAATG 1 cut(s) 445
BseCI ATCGAT 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 509, 796
BseMI GCAATG 1 cut(s) 445
BseMII CTCAG 6 cut(s) 284, 381, 393, 667, 675, 720
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 7 cut(s) 43, 75, 91, 386, 650, 653, 920
BseXI GCAGC 1 cut(s) 923
BshFI GGCC 2 cut(s) 501, 682
BshVI ATCGAT 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 509, 796
BsmAI GTCTC 2 cut(s) 273, 414
BsmI GAATGC 1 cut(s) 760
BsnI GGCC 2 cut(s) 501, 682
Bsp1286I GDGCHC 2 cut(s) 125, 380
Bsp143I GATC 2 cut(s) 157, 313
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 4 cut(s) 75, 560, 619, 887
BspANI GGCC 2 cut(s) 501, 682
BspCNI CTCAG 6 cut(s) 283, 380, 392, 666, 676, 721
BspDI ATCGAT 1 cut(s) 141
BspOI GCTAGC 1 cut(s) 728
BspQI GCTCTTC 1 cut(s) 303
BsrBI CCGCTC 1 cut(s) 619
BsrDI GCAATG 1 cut(s) 445
BsrI ACTGG 1 cut(s) 29
BssMI GATC 2 cut(s) 157, 313
Bst4CI ACNGT 1 cut(s) 443
Bst6I CTCTTC 6 cut(s) 95, 303, 399, 419, 897, 918
BstC8I GCNNGC 1 cut(s) 726
BstDEI CTNAG 8 cut(s) 270, 321, 367, 379, 451, 653, 684, 729
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 2 cut(s) 160, 316
BstMAI GTCTC 2 cut(s) 273, 414
BstMBI GATC 2 cut(s) 157, 313
BstMWI GCNNNNNNNGC 5 cut(s) 120, 360, 557, 569, 725
BstPAI GACNNNNGTC 1 cut(s) 441
BstSFI CTRYAG 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 923
BstV2I GAAGAC 2 cut(s) 225, 948
BstXI CCANNNNNNTGG 1 cut(s) 535
Bsu15I ATCGAT 1 cut(s) 141
Bsu36I CCTNAGG 1 cut(s) 684
BsuRI GGCC 2 cut(s) 501, 682
BsuTUI ATCGAT 1 cut(s) 141
BtsI GCAGTG 2 cut(s) 66, 719
BtsIMutI CAGTG 2 cut(s) 66, 719
Cac8I GCNNGC 1 cut(s) 726
CfoI GCGC 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 500
ClaI ATCGAT 1 cut(s) 141
Csp6I GTAC 2 cut(s) 433, 802
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviAII CATG 2 cut(s) 413, 485
CviQI GTAC 2 cut(s) 433, 802
DdeI CTNAG 8 cut(s) 270, 321, 367, 379, 451, 653, 684, 729
DpnI GATC 2 cut(s) 159, 315
DpnII GATC 2 cut(s) 157, 313
Eam1104I CTCTTC 6 cut(s) 95, 303, 399, 419, 897, 918
EarI CTCTTC 6 cut(s) 95, 303, 399, 419, 897, 918
Ecl136II GAGCTC 1 cut(s) 123
Eco147I AGGCCT 1 cut(s) 682
Eco24I GRGCYC 2 cut(s) 125, 380
Eco47III AGCGCT 1 cut(s) 113
Eco53kI GAGCTC 1 cut(s) 123
Eco57I CTGAAG 2 cut(s) 443, 960
Eco81I CCTNAGG 1 cut(s) 684
EcoICRI GAGCTC 1 cut(s) 123
EcoT38I GRGCYC 2 cut(s) 125, 380
FaeI CATG 2 cut(s) 416, 488
FaiI YATR 6 cut(s) 414, 486, 548, 611, 841, 854
FatI CATG 2 cut(s) 412, 484
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 3 cut(s) 6, 561, 912
FriOI GRGCYC 2 cut(s) 125, 380
Fsp4HI GCNGC 3 cut(s) 6, 561, 912
FspBI CTAG 3 cut(s) 317, 573, 725
GlaI GCGC 1 cut(s) 113
GluI GCNGC 3 cut(s) 6, 561, 912
GsuI CTGGAG 3 cut(s) 139, 151, 653
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 2 cut(s) 501, 682
HhaI GCGC 1 cut(s) 114
Hin1II CATG 2 cut(s) 416, 488
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 9 cut(s) 50, 138, 143, 171, 221, 248, 407, 476, 935
HphI GGTGA 3 cut(s) 18, 482, 712
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 7 cut(s) 106, 280, 370, 382, 598, 656, 940
Hpy188III TCNNGA 4 cut(s) 118, 168, 738, 821
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 923
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 443
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 3 cut(s) 613, 758, 950
HpyF10VI GCNNNNNNNGC 5 cut(s) 120, 360, 557, 569, 725
HpyF3I CTNAG 8 cut(s) 270, 321, 367, 379, 451, 653, 684, 729
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 2 cut(s) 416, 488
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 157, 313
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 2 cut(s) 120, 305
Lsp1109I GCAGC 1 cut(s) 923
LweI GCATC 2 cut(s) 216, 937
MaeI CTAG 3 cut(s) 317, 573, 725
MaeII ACGT 1 cut(s) 199
MalI GATC 2 cut(s) 159, 315
MbiI CCGCTC 1 cut(s) 619
MboI GATC 2 cut(s) 157, 313
MfeI CAATTG 2 cut(s) 356, 710
MhlI GDGCHC 2 cut(s) 125, 380
MluCI AATT 2 cut(s) 356, 710
MlyI GAGTC 3 cut(s) 44, 215, 416
MmeI TCCRAC 2 cut(s) 166, 576
MroXI GAANNNNTTC 1 cut(s) 142
MslI CAYNNNNRTG 1 cut(s) 489
MspA1I CMGCKG 1 cut(s) 274
MunI CAATTG 2 cut(s) 356, 710
Mva1269I GAATGC 1 cut(s) 760
MwoI GCNNNNNNNGC 5 cut(s) 120, 360, 557, 569, 725
NdeII GATC 2 cut(s) 157, 313
NheI GCTAGC 1 cut(s) 724
NlaIII CATG 2 cut(s) 416, 488
PceI AGGCCT 1 cut(s) 682
PciSI GCTCTTC 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 602
PctI GAATGC 1 cut(s) 760
PdmI GAANNNNTTC 1 cut(s) 142
PfeI GAWTC 6 cut(s) 138, 143, 171, 248, 476, 935
PflMI CCANNNNNTGG 2 cut(s) 509, 796
PkrI GCNGC 3 cut(s) 7, 562, 913
PleI GAGTC 3 cut(s) 44, 215, 415
PpsI GAGTC 3 cut(s) 44, 215, 415
PshAI GACNNNNGTC 1 cut(s) 441
Psp124BI GAGCTC 1 cut(s) 125
PspPI GGNCC 1 cut(s) 500
PsrI GAACNNNNNNTAC 2 cut(s) 837, 869
PvuII CAGCTG 1 cut(s) 274
RsaI GTAC 2 cut(s) 434, 803
RsaNI GTAC 2 cut(s) 433, 802
RseI CAYNNNNRTG 1 cut(s) 489
SacI GAGCTC 1 cut(s) 125
SalI GTCGAC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 303
SatI GCNGC 3 cut(s) 6, 561, 912
Sau3AI GATC 2 cut(s) 157, 313
Sau96I GGNCC 1 cut(s) 500
SchI GAGTC 3 cut(s) 44, 215, 416
SduI GDGCHC 2 cut(s) 125, 380
SfaNI GCATC 2 cut(s) 216, 937
SfcI CTRYAG 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 489
SmlI CTYRAG 2 cut(s) 581, 819
SmoI CTYRAG 2 cut(s) 581, 819
Sse9I AATT 2 cut(s) 356, 710
SseBI AGGCCT 1 cut(s) 682
SsiI CCGC 4 cut(s) 75, 560, 619, 887
SspMI CTAG 3 cut(s) 317, 573, 725
SstI GAGCTC 1 cut(s) 125
StuI AGGCCT 1 cut(s) 682
TaaI ACNGT 1 cut(s) 443
TaiI ACGT 1 cut(s) 202
TaqI TCGA 4 cut(s) 15, 141, 224, 251
TasI AATT 2 cut(s) 356, 710
TauI GCSGC 1 cut(s) 563
TfiI GAWTC 6 cut(s) 138, 143, 171, 248, 476, 935
TscAI CASTG 2 cut(s) 73, 726
TseI GCWGC 2 cut(s) 5, 911
TspDTI ATGAA 3 cut(s) 194, 501, 825
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 2 cut(s) 73, 726
Van91I CCANNNNNTGG 2 cut(s) 509, 796
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 142
XspI CTAG 3 cut(s) 317, 573, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.