Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0012509

Physical Location & Seq

Genomic Coordinates Forward (+)

52551476 .. 52552931

Gene Structure 1456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G028470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCTGCTTCAGTCGACACCCCATCACCAGTTCAACTCAACAAGGAGGACTCCTCCATCTTCTTCACTGCTTCCGCTTCTTCTCCTCTCTTCACTCCCTCCTCCGATAAGCGCTTCTGGAGCTCTCTACAGACCCGAATCGATTCCATTCTCCAAGATCGCAACTCCAGAATCCCAATGGTGAGTGTGTGGTTCCATGCACCCTTTTCAATGACTTCACTGTGTAATGTTGGAGAAGAGAAACGTGGGAGAGGATTGAAGGAAGACTCGATGCTTTTGATGAGAGGGTTTGATTCGATTGCTCACACTCTGTCTCAGCTGTCTGACACTTTAGACAATGCTCTTCAGGGAGCTAATGATCTAGCTAAGCCACCCACATTGACAGAGATATTCCACTGCCAGTTGAGCAACTCAGAGGAGGGCTCAGAAGAACAACAACAGAACGCAGAAGAGTCTCATGTAGGGTTGAAGAGGAAGTACGACAACAGTCATTGCTTAGAGGAACAAGGAGATGGTGATGATTCACAACATGAAAATGAGCAAGGCCCAAAAGATGGGAAGCTGAAGAAAGCCAAAAATCTGGCGATTTCTATGGCAACAAAGGCGGCTTCGTTTGCTAGGGAACTCAAGTTGATTAGGTCGGATTTATCGTTTATGCAAGAGCGGTGTGCTTTGCTGGAGGAGGAGAATAGGAGGCTCAGAGATGGATTTGACAAGGGGTTGAGGCCTGAGGAAGATGATTTGGTGAGGCTTCAATTGGAGGCACTTCTAGCTGAGAAATCAAGATTAGCAAATGAGAATGCAAATCTGGTTAGAGAAAACCAATGCCTACACCAACTTGTGGAGTACCACCAGCTTACCTCTCAAGACCTGTCTGCTTCATCATACGAACAAGTTATACAAGGGTTGTGCTTGGACTTCTCATCTCCACCGCCACCAATACCAGAAGAGGAGGCAGCAAACGACGAAGAGAGTGTAGAATCTGAAGATGATGCAACAACCCCAAGAACTAATCTTTTTGGCTTACACTCATCTTTTGATGAGCATTGTCAAGGAGATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

39.55

Weight (kDa)

4.68

Isoelectric Point (pI)

57.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02800
fragaria_vesca	FvH4_2g23580 FvH4_2g23580
malus_domestica	MD03G1265000.v1.1 MD11G1285200.v1.1
prunus_persica	Prupe.8G241100_v2.0.a1
pyrus_communis	pycom03g21210 pycom11g25280 pycom11g25340
rosa_chinensis	RchiOBHm_Chr6g0291051
rosa_laevigata	RLG00000012151
rosa_multiflora	Rmu_sc0004642.1_g000003
rosa_roxburghii	Rroxscaffold_7G00176420
rosa_rugosa	Rorug06G0217200
rosa_samantha	Rh6AG327300 Rh6BG334800 Rh6CG341000 Rh6DG328300
rosa_wichuraiana	Rw6G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	554, 841
AccBSI	CCGCTC	1 cut(s)	664
AccI	GTMKAC	1 cut(s)	15
AciI	CCGC	4 cut(s)	75, 605, 664, 932
AcuI	CTGAAG	3 cut(s)	329, 584, 1005
AfaI	GTAC	2 cut(s)	479, 848
AfeI	AGCGCT	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	554, 841
AgsI	TTSAA	5 cut(s)	35, 210, 259, 469, 755
AluBI	AGCT	7 cut(s)	123, 319, 353, 365, 562, 773, 856
AluI	AGCT	7 cut(s)	123, 319, 353, 365, 562, 773, 856
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	2 cut(s)	318, 459
Aor51HI	AGCGCT	1 cut(s)	113
AoxI	GGCC	2 cut(s)	544, 725
ApeKI	GCWGC	2 cut(s)	5, 956
Asp700I	GAANNNNTTC	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	4 cut(s)	18, 193, 527, 757
AxyI	CCTNAGG	1 cut(s)	729
BanII	GRGCYC	2 cut(s)	125, 425
BarI	GAAGNNNNNNTAC	2 cut(s)	461, 493
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	968
BccI	CCATC	5 cut(s)	31, 65, 506, 548, 698
BcoDI	GTCTC	2 cut(s)	318, 459
BfaI	CTAG	3 cut(s)	362, 618, 770
BfmI	CTRYAG	1 cut(s)	128
BfoI	RGCGCY	1 cut(s)	115
BisI	GCNGC	3 cut(s)	6, 606, 957
BlpI	GCTNAGC	1 cut(s)	366
BlsI	GCNGC	3 cut(s)	7, 607, 958
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	1 cut(s)	194
BmsI	GCATC	2 cut(s)	261, 982
BoxI	GACNNNNGTC	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	270
BplI	GAGNNNNNCTC	4 cut(s)	38, 70, 407, 439
BpmI	CTGGAG	3 cut(s)	139, 151, 698
Bpu1102I	GCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	2 cut(s)	611, 849
Bsa29I	ATCGAT	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	2 cut(s)	554, 841
Bse1I	ACTGG	2 cut(s)	29, 400
Bse21I	CCTNAGG	1 cut(s)	729
Bse3DI	GCAATG	1 cut(s)	490
BseCI	ATCGAT	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	554, 841
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	6 cut(s)	329, 426, 438, 712, 720, 765
BseNI	ACTGG	2 cut(s)	29, 400
BseRI	GAGGAG	7 cut(s)	43, 75, 91, 431, 695, 698, 965
BseXI	GCAGC	1 cut(s)	968
BshFI	GGCC	2 cut(s)	546, 727
BshVI	ATCGAT	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	125
BslI	CCNNNNNNNGG	2 cut(s)	554, 841
BsmAI	GTCTC	2 cut(s)	318, 459
BsmI	GAATGC	1 cut(s)	805
BsnI	GGCC	2 cut(s)	546, 727
Bsp1286I	GDGCHC	2 cut(s)	125, 425
Bsp143I	GATC	2 cut(s)	157, 358
Bsp1720I	GCTNAGC	1 cut(s)	366
BspACI	CCGC	4 cut(s)	75, 605, 664, 932
BspANI	GGCC	2 cut(s)	546, 727
BspCNI	CTCAG	6 cut(s)	328, 425, 437, 711, 721, 766
BspDI	ATCGAT	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	348
BsrBI	CCGCTC	1 cut(s)	664
BsrDI	GCAATG	1 cut(s)	490
BsrI	ACTGG	2 cut(s)	29, 400
BssMI	GATC	2 cut(s)	157, 358
Bst4CI	ACNGT	2 cut(s)	222, 488
Bst6I	CTCTTC	7 cut(s)	95, 231, 348, 444, 464, 942, 963
BstDEI	CTNAG	8 cut(s)	315, 366, 412, 424, 496, 698, 729, 774
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	2 cut(s)	160, 361
BstMAI	GTCTC	2 cut(s)	318, 459
BstMBI	GATC	2 cut(s)	157, 358
BstMWI	GCNNNNNNNGC	5 cut(s)	120, 405, 602, 614, 770
BstPAI	GACNNNNGTC	1 cut(s)	486
BstSFI	CTRYAG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	968
BstV2I	GAAGAC	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	580
Bsu15I	ATCGAT	1 cut(s)	141
Bsu36I	CCTNAGG	1 cut(s)	729
BsuRI	GGCC	2 cut(s)	546, 727
BsuTUI	ATCGAT	1 cut(s)	141
BtsI	GCAGTG	2 cut(s)	66, 394
BtsIMutI	CAGTG	3 cut(s)	66, 218, 394
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	545
ClaI	ATCGAT	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	478, 847
CspCI	CAANNNNNGTGG	2 cut(s)	360, 395
CviAII	CATG	3 cut(s)	197, 458, 530
CviQI	GTAC	2 cut(s)	478, 847
DdeI	CTNAG	8 cut(s)	315, 366, 412, 424, 496, 698, 729, 774
DpnI	GATC	2 cut(s)	159, 360
DpnII	GATC	2 cut(s)	157, 358
Eam1104I	CTCTTC	7 cut(s)	95, 231, 348, 444, 464, 942, 963
EarI	CTCTTC	7 cut(s)	95, 231, 348, 444, 464, 942, 963
Ecl136II	GAGCTC	1 cut(s)	123
Eco147I	AGGCCT	1 cut(s)	727
Eco24I	GRGCYC	2 cut(s)	125, 425
Eco47III	AGCGCT	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	123
Eco57I	CTGAAG	3 cut(s)	329, 584, 1005
Eco81I	CCTNAGG	1 cut(s)	729
EcoICRI	GAGCTC	1 cut(s)	123
EcoT38I	GRGCYC	2 cut(s)	125, 425
FaeI	CATG	3 cut(s)	200, 461, 533
FaiI	YATR	7 cut(s)	198, 459, 531, 593, 656, 886, 899
FatI	CATG	3 cut(s)	196, 457, 529
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	3 cut(s)	6, 606, 957
FriOI	GRGCYC	2 cut(s)	125, 425
Fsp4HI	GCNGC	3 cut(s)	6, 606, 957
FspBI	CTAG	3 cut(s)	362, 618, 770
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	3 cut(s)	6, 606, 957
GsuI	CTGGAG	3 cut(s)	139, 151, 698
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	546, 727
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	200, 461, 533
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	9 cut(s)	50, 138, 143, 171, 266, 293, 452, 521, 980
HphI	GGTGA	4 cut(s)	18, 193, 527, 757
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	7 cut(s)	106, 325, 415, 427, 643, 701, 985
Hpy188III	TCNNGA	4 cut(s)	118, 168, 783, 866
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	1 cut(s)	968
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	2 cut(s)	222, 488
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	4 cut(s)	200, 658, 803, 995
HpyF10VI	GCNNNNNNNGC	5 cut(s)	120, 405, 602, 614, 770
HpyF3I	CTNAG	8 cut(s)	315, 366, 412, 424, 496, 698, 729, 774
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	3 cut(s)	200, 461, 533
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	157, 358
LguI	GCTCTTC	1 cut(s)	348
LmnI	GCTCC	2 cut(s)	120, 350
Lsp1109I	GCAGC	1 cut(s)	968
LweI	GCATC	2 cut(s)	261, 982
MaeI	CTAG	3 cut(s)	362, 618, 770
MaeII	ACGT	1 cut(s)	244
MalI	GATC	2 cut(s)	159, 360
MbiI	CCGCTC	1 cut(s)	664
MboI	GATC	2 cut(s)	157, 358
MfeI	CAATTG	1 cut(s)	755
MhlI	GDGCHC	2 cut(s)	125, 425
MluCI	AATT	1 cut(s)	755
MlyI	GAGTC	3 cut(s)	44, 260, 461
MmeI	TCCRAC	2 cut(s)	211, 621
MroXI	GAANNNNTTC	1 cut(s)	142
MslI	CAYNNNNRTG	1 cut(s)	534
MspA1I	CMGCKG	1 cut(s)	319
MunI	CAATTG	1 cut(s)	755
Mva1269I	GAATGC	1 cut(s)	805
MwoI	GCNNNNNNNGC	5 cut(s)	120, 405, 602, 614, 770
NdeII	GATC	2 cut(s)	157, 358
NlaIII	CATG	3 cut(s)	200, 461, 533
NlaIV	GGNNCC	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	727
PciSI	GCTCTTC	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	647
PctI	GAATGC	1 cut(s)	805
PdmI	GAANNNNTTC	1 cut(s)	142
PfeI	GAWTC	6 cut(s)	138, 143, 171, 293, 521, 980
PflMI	CCANNNNNTGG	2 cut(s)	554, 841
PkrI	GCNGC	3 cut(s)	7, 607, 958
PleI	GAGTC	3 cut(s)	44, 260, 460
PpsI	GAGTC	3 cut(s)	44, 260, 460
PshAI	GACNNNNGTC	1 cut(s)	486
Psp124BI	GAGCTC	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	1 cut(s)	545
PsrI	GAACNNNNNNTAC	2 cut(s)	882, 914
PvuII	CAGCTG	1 cut(s)	319
RsaI	GTAC	2 cut(s)	479, 848
RsaNI	GTAC	2 cut(s)	478, 847
RseI	CAYNNNNRTG	1 cut(s)	534
SacI	GAGCTC	1 cut(s)	125
SalI	GTCGAC	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	348
SatI	GCNGC	3 cut(s)	6, 606, 957
Sau3AI	GATC	2 cut(s)	157, 358
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	3 cut(s)	44, 260, 461
SduI	GDGCHC	2 cut(s)	125, 425
SfaNI	GCATC	2 cut(s)	261, 982
SfcI	CTRYAG	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	2 cut(s)	626, 864
SmoI	CTYRAG	2 cut(s)	626, 864
Sse9I	AATT	1 cut(s)	755
SseBI	AGGCCT	1 cut(s)	727
SsiI	CCGC	4 cut(s)	75, 605, 664, 932
SspMI	CTAG	3 cut(s)	362, 618, 770
SstI	GAGCTC	1 cut(s)	125
StuI	AGGCCT	1 cut(s)	727
TaaI	ACNGT	2 cut(s)	222, 488
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	4 cut(s)	15, 141, 269, 296
TasI	AATT	1 cut(s)	755
TauI	GCSGC	1 cut(s)	608
TfiI	GAWTC	6 cut(s)	138, 143, 171, 293, 521, 980
TscAI	CASTG	3 cut(s)	73, 225, 401
TseI	GCWGC	2 cut(s)	5, 956
TspDTI	ATGAA	2 cut(s)	546, 870
TspRI	CASTG	3 cut(s)	73, 225, 401
Van91I	CCANNNNNTGG	2 cut(s)	554, 841
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	15
XmnI	GAANNNNTTC	1 cut(s)	142
XspI	CTAG	3 cut(s)	362, 618, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.