FvH4_2g23580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012509
Physical Location & Seq
Forward (+)
19311354 .. 19313123
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23580.t1

Sequence Viewer

Length: 1050 bp
ATGGCAGCTTCAGTGGACACTCCATCACCACTTCAACTCAACAAGGCTTCTGCTTCTTCTCCTCTCTTCAGTCCCTCATCTGATAACCGCTTCTGGAGCTCTCTACAGACCCGAATCGATTCGATTATCCAAGATCCTAACTCCAGAGTTCCAATGGCCCAGAACCCACCAAATGCTGATCCTTCTCTTCAAATGAATGCTGGAGAAGCGAAACGTGGAGGAGGATTGAAGGAAGACACGATGGTTTTGATGAGAGGGTTTGATTCGATTGCTCACACTTTGTCTCAGTTGTCTAACACTTTAGACAATGCTCTTCAGGGAGCTAATGATCTAGCTAAGCCACCCACATTGACAGAGATATTCCACAGCCAGTTGAGGAACTCAGAGAGAAAAGAGGAGGGCTCAGAAGAGCAACGACAGAAGGTAGAGGAGGAGGCTCATGTAGGATTGAAGAGGAAGTTTGACAACAGTCATTGCTCAGAGGAACAAGGAGATGGTGATGATCCACAACATGAAAATGAGCAAGTCCTAAAAGATGTGAAGCTGAAGAAAGCCAAAAATCTGGCTATTTCTATGGCAACGAAAGCAGCTTCGTTTGCTAGGGAACTCAAGTTGATTAGGTCGGATTTATGGTTTATGCAAGAGCGGTGTGCTTTGCTGGAGTTGGAGAATATGAGGCTCAGAGATGGGTTTGAGAAGGGGTTGAGGCCTGAGGAAGATGATTTGGTGAGGCTTCAATTGGAGGCACTGCTAGCTGAGAAATCAAGATTAGCAAATGAGAATGCAAATCTGGTTAGAGAAAACCAATGCCTCCACCAACTCGTAGAGTACCACCAGCTCACCTCTCAAGACCTGTCTGCTTCGTCATACGAACAAGTTATCCAAGGGTTGTGCTTAGACTTCTCGTCTCCACCTCCGCCAATACCAGAAGAGGAAGCAGCAAACGATGAAGAGAGCGTAGAATCTGAAGATGGCGCAACAACCCCAAGATCTAATCTTTTTGGCTTACACTCATCTTTCGATGAGCACTATCAAGGAGATTGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

350

Amino Acids

38.87

Weight (kDa)

4.77

Isoelectric Point (pI)

56.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012509)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02800
fragaria_vesca FvH4_2g23580 FvH4_2g23580
malus_domestica MD03G1265000.v1.1 MD11G1285200.v1.1
prunus_persica Prupe.8G241100_v2.0.a1
pyrus_communis pycom03g21210 pycom11g25280 pycom11g25340
rosa_chinensis RchiOBHm_Chr6g0291051
rosa_laevigata RLG00000012151
rosa_multiflora Rmu_sc0004642.1_g000003
rosa_roxburghii Rroxscaffold_7G00176420
rosa_rugosa Rorug06G0217200
rosa_samantha Rh6AG327300 Rh6BG334800 Rh6CG341000 Rh6DG328300
rosa_wichuraiana Rw6G028470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 646
AciI CCGC 3 cut(s) 88, 646, 917
AclWI GGATC 3 cut(s) 128, 173, 497
AcuI CTGAAG 4 cut(s) 52, 299, 566, 987
AfaI GTAC 1 cut(s) 830
AgsI TTSAA 5 cut(s) 35, 191, 229, 451, 737
AhdI GACNNNNNGTC 1 cut(s) 904
AloI GAACNNNNNNTCC 2 cut(s) 864, 896
AluBI AGCT 8 cut(s) 8, 99, 323, 335, 544, 590, 755, 838
AluI AGCT 8 cut(s) 8, 99, 323, 335, 544, 590, 755, 838
Alw21I GWGCWC 2 cut(s) 101, 1029
Alw26I GTCTC 2 cut(s) 288, 912
AlwI GGATC 3 cut(s) 128, 173, 497
AoxI GGCC 2 cut(s) 156, 707
ApeKI GCWGC 3 cut(s) 5, 587, 938
Asp700I GAANNNNTTC 1 cut(s) 118
AspLEI GCGC 1 cut(s) 977
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 4 cut(s) 18, 509, 739, 832
AsuNHI GCTAGC 1 cut(s) 751
AxyI CCTNAGG 1 cut(s) 711
BanII GRGCYC 2 cut(s) 101, 404
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 2 cut(s) 101, 1029
BbvI GCAGC 3 cut(s) 17, 599, 950
BccI CCATC 5 cut(s) 31, 235, 488, 680, 965
BcoDI GTCTC 2 cut(s) 288, 912
BfaI CTAG 3 cut(s) 332, 600, 752
BfmI CTRYAG 1 cut(s) 104
BglII AGATCT 1 cut(s) 989
BisI GCNGC 3 cut(s) 6, 588, 939
BlpI GCTNAGC 1 cut(s) 336
BlsI GCNGC 3 cut(s) 7, 589, 940
BmeRI GACNNNNNGTC 1 cut(s) 904
BmgT120I GGNCC 1 cut(s) 157
BmtI GCTAGC 1 cut(s) 755
BoxI GACNNNNGTC 1 cut(s) 468
BpiI GAAGAC 1 cut(s) 240
BplI GAGNNNNNCTC 2 cut(s) 386, 418
BpmI CTGGAG 4 cut(s) 115, 127, 222, 680
Bpu1102I GCTNAGC 1 cut(s) 336
BpuEI CTTGAG 2 cut(s) 593, 831
Bsa29I ATCGAT 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 883
Bse1I ACTGG 1 cut(s) 370
Bse21I CCTNAGG 1 cut(s) 711
Bse3DI GCAATG 1 cut(s) 472
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 883
BseMI GCAATG 1 cut(s) 472
BseMII CTCAG 7 cut(s) 299, 396, 417, 492, 694, 702, 747
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 5 cut(s) 51, 234, 410, 443, 446
BseXI GCAGC 3 cut(s) 17, 599, 950
BshFI GGCC 2 cut(s) 158, 709
BshVI ATCGAT 1 cut(s) 117
BsiHKAI GWGCWC 2 cut(s) 101, 1029
BslFI GGGAC 1 cut(s) 57
BsmAI GTCTC 2 cut(s) 288, 912
BsmBI CGTCTC 1 cut(s) 912
BsmFI GGGAC 1 cut(s) 57
BsmI GAATGC 2 cut(s) 202, 787
BsnI GGCC 2 cut(s) 158, 709
Bsp1286I GDGCHC 3 cut(s) 101, 404, 1029
Bsp143I GATC 5 cut(s) 133, 178, 328, 502, 989
Bsp1720I GCTNAGC 1 cut(s) 336
BspACI CCGC 3 cut(s) 88, 646, 917
BspANI GGCC 2 cut(s) 158, 709
BspCNI CTCAG 7 cut(s) 298, 395, 416, 491, 693, 703, 748
BspDI ATCGAT 1 cut(s) 117
BspOI GCTAGC 1 cut(s) 755
BspPI GGATC 3 cut(s) 128, 173, 497
BspQI GCTCTTC 2 cut(s) 318, 402
BsrBI CCGCTC 1 cut(s) 646
BsrDI GCAATG 1 cut(s) 472
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 883
BssMI GATC 5 cut(s) 133, 178, 328, 502, 989
BssT1I CCWWGG 1 cut(s) 883
Bst4CI ACNGT 1 cut(s) 470
Bst6I CTCTTC 7 cut(s) 71, 192, 318, 402, 446, 924, 945
BstC8I GCNNGC 1 cut(s) 753
BstDEI CTNAG 9 cut(s) 285, 336, 382, 403, 478, 680, 711, 756, 895
BstHHI GCGC 1 cut(s) 977
BstKTI GATC 5 cut(s) 136, 181, 331, 505, 992
BstMAI GTCTC 2 cut(s) 288, 912
BstMBI GATC 5 cut(s) 133, 178, 328, 502, 989
BstMWI GCNNNNNNNGC 5 cut(s) 96, 206, 584, 596, 752
BstPAI GACNNNNGTC 1 cut(s) 468
BstSFI CTRYAG 1 cut(s) 104
BstV1I GCAGC 3 cut(s) 17, 599, 950
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 2 cut(s) 133, 989
BstXI CCANNNNNNTGG 1 cut(s) 562
BstYI RGATCY 2 cut(s) 133, 989
Bsu15I ATCGAT 1 cut(s) 117
Bsu36I CCTNAGG 1 cut(s) 711
BsuRI GGCC 2 cut(s) 158, 709
BsuTUI ATCGAT 1 cut(s) 117
BtsI GCAGTG 1 cut(s) 746
BtsIMutI CAGTG 2 cut(s) 18, 746
Cac8I GCNNGC 1 cut(s) 753
CfoI GCGC 1 cut(s) 977
Cfr13I GGNCC 1 cut(s) 157
ClaI ATCGAT 1 cut(s) 117
Csp6I GTAC 1 cut(s) 829
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 2 cut(s) 440, 512
CviQI GTAC 1 cut(s) 829
DdeI CTNAG 9 cut(s) 285, 336, 382, 403, 478, 680, 711, 756, 895
DpnI GATC 5 cut(s) 135, 180, 330, 504, 991
DpnII GATC 5 cut(s) 133, 178, 328, 502, 989
DriI GACNNNNNGTC 1 cut(s) 904
Eam1104I CTCTTC 7 cut(s) 71, 192, 318, 402, 446, 924, 945
Eam1105I GACNNNNNGTC 1 cut(s) 904
EarI CTCTTC 7 cut(s) 71, 192, 318, 402, 446, 924, 945
EciI GGCGGA 1 cut(s) 906
Ecl136II GAGCTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 883
Eco147I AGGCCT 1 cut(s) 709
Eco24I GRGCYC 2 cut(s) 101, 404
Eco53kI GAGCTC 1 cut(s) 99
Eco57I CTGAAG 4 cut(s) 52, 299, 566, 987
Eco81I CCTNAGG 1 cut(s) 711
EcoICRI GAGCTC 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 883
EcoT38I GRGCYC 2 cut(s) 101, 404
ErhI CCWWGG 1 cut(s) 883
Esp3I CGTCTC 1 cut(s) 912
FaeI CATG 2 cut(s) 443, 515
FaiI YATR 7 cut(s) 441, 513, 575, 631, 638, 674, 868
FaqI GGGAC 1 cut(s) 57
FatI CATG 2 cut(s) 439, 511
Fnu4HI GCNGC 3 cut(s) 6, 588, 939
FriOI GRGCYC 2 cut(s) 101, 404
Fsp4HI GCNGC 3 cut(s) 6, 588, 939
FspBI CTAG 3 cut(s) 332, 600, 752
GlaI GCGC 1 cut(s) 976
GluI GCNGC 3 cut(s) 6, 588, 939
GsuI CTGGAG 4 cut(s) 115, 127, 222, 680
HaeIII GGCC 2 cut(s) 158, 709
HhaI GCGC 1 cut(s) 977
Hin1II CATG 2 cut(s) 443, 515
Hin6I GCGC 1 cut(s) 975
HinP1I GCGC 1 cut(s) 975
HinfI GANTC 4 cut(s) 114, 119, 263, 962
HphI GGTGA 4 cut(s) 18, 509, 739, 832
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 7 cut(s) 82, 385, 406, 481, 625, 683, 967
Hpy188III TCNNGA 4 cut(s) 94, 144, 765, 848
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 4 cut(s) 192, 223, 415, 691
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 640, 785
HpyF10VI GCNNNNNNNGC 5 cut(s) 96, 206, 584, 596, 752
HpyF3I CTNAG 9 cut(s) 285, 336, 382, 403, 478, 680, 711, 756, 895
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 2 cut(s) 443, 515
HspAI GCGC 1 cut(s) 975
Kzo9I GATC 5 cut(s) 133, 178, 328, 502, 989
LguI GCTCTTC 2 cut(s) 318, 402
LmnI GCTCC 2 cut(s) 96, 320
Lsp1109I GCAGC 3 cut(s) 17, 599, 950
MaeI CTAG 3 cut(s) 332, 600, 752
MaeII ACGT 1 cut(s) 214
MalI GATC 5 cut(s) 135, 180, 330, 504, 991
MbiI CCGCTC 1 cut(s) 646
MboI GATC 5 cut(s) 133, 178, 328, 502, 989
MfeI CAATTG 1 cut(s) 737
MflI RGATCY 2 cut(s) 133, 989
MhlI GDGCHC 3 cut(s) 101, 404, 1029
MluCI AATT 1 cut(s) 737
MmeI TCCRAC 2 cut(s) 603, 645
MroXI GAANNNNTTC 1 cut(s) 118
MslI CAYNNNNRTG 1 cut(s) 516
MunI CAATTG 1 cut(s) 737
Mva1269I GAATGC 2 cut(s) 202, 787
MwoI GCNNNNNNNGC 5 cut(s) 96, 206, 584, 596, 752
NdeII GATC 5 cut(s) 133, 178, 328, 502, 989
NheI GCTAGC 1 cut(s) 751
NlaIII CATG 2 cut(s) 443, 515
PceI AGGCCT 1 cut(s) 709
PciSI GCTCTTC 2 cut(s) 318, 402
PctI GAATGC 2 cut(s) 202, 787
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 4 cut(s) 114, 119, 263, 962
PkrI GCNGC 3 cut(s) 7, 589, 940
PshAI GACNNNNGTC 1 cut(s) 468
Psp124BI GAGCTC 1 cut(s) 101
PspPI GGNCC 1 cut(s) 157
PsuI RGATCY 2 cut(s) 133, 989
RsaI GTAC 1 cut(s) 830
RsaNI GTAC 1 cut(s) 829
RseI CAYNNNNRTG 1 cut(s) 516
SacI GAGCTC 1 cut(s) 101
SapI GCTCTTC 2 cut(s) 318, 402
SatI GCNGC 3 cut(s) 6, 588, 939
Sau3AI GATC 5 cut(s) 133, 178, 328, 502, 989
Sau96I GGNCC 1 cut(s) 157
SduI GDGCHC 3 cut(s) 101, 404, 1029
SfcI CTRYAG 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 2 cut(s) 608, 846
SmoI CTYRAG 2 cut(s) 608, 846
Sse9I AATT 1 cut(s) 737
SseBI AGGCCT 1 cut(s) 709
SsiI CCGC 3 cut(s) 88, 646, 917
SspMI CTAG 3 cut(s) 332, 600, 752
SstI GAGCTC 1 cut(s) 101
StuI AGGCCT 1 cut(s) 709
StyI CCWWGG 1 cut(s) 883
TaaI ACNGT 1 cut(s) 470
TaiI ACGT 1 cut(s) 217
TaqI TCGA 4 cut(s) 117, 122, 266, 1020
TasI AATT 1 cut(s) 737
TfiI GAWTC 4 cut(s) 114, 119, 263, 962
TscAI CASTG 2 cut(s) 18, 753
TseI GCWGC 3 cut(s) 5, 587, 938
TspDTI ATGAA 3 cut(s) 209, 528, 963
TspRI CASTG 2 cut(s) 18, 753
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 3 cut(s) 332, 600, 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.