Rh6CG341000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012509
Physical Location & Seq
Forward (+)
53221036 .. 53222900
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG341000.1

Sequence Viewer

Length: 783 bp
ATGGCTGCTTCAGTCGACACCCCATCACCAGTTCAACTCAACAAGGACTCCTCCATCTTCTTCACTGCTTCCGCGTCTTCTCCTCTCTTCACTCCCTCCTCCGATAAGCGCTTCTGGAGCTCTCTACAGACCCGAATCGATTCCATTCTCCAAGATCGCAACTCCAGAATCCCAATGGCTCAAAACCCACCAAATCCTGATCCTTCTCCACATATGAATGTTGGAGAAGCGAAACGTGGGAGAGGATTGAAGGAAGACTCGATGCTTTTGATGAGAGGGTTTGATTCCATTGCTCACACTCTGTCTCAGCTGTCTGACACTTTAGACAATGCTCTTCAGGGAGCTAATGATCTAGCTAAGCCACCCACATTGACAGAGATATTCCACAGCCAATTGAGCAACTCAGAGGAGGAGGGCTCAGAAGAACAACAACAACAGAACGCAGAAGAGTCTCATGTAGGGTTGAAGAGGAAGTACGACAACAGTCATTGCTTAGAGGAACAAGGAGATGGTGATGATTCACAACATGAAAATGAGCAAGGCCCAAAAGATGGGAAGCTGAAGAAAGCCAAAAATCTGGCGATTTCTATGGCAACAAAGGCGGCTTCGTTTGCTAGGGAACTCAAGTTGATTAGGTCGGATTTATCGTTTATGCAAGAGCGGTGTGCTTTGCTGGAGGAGGAGAATAGGAGGCTCAGAGATGGATTTGACAAGGGGTTGAGGCCTGAGGAAGATGATTTGGTAAGATTCATGTCCTTCGATTTTTCCTATTTATGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

29.14

Weight (kDa)

5.02

Isoelectric Point (pI)

62.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012509)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02800
fragaria_vesca FvH4_2g23580 FvH4_2g23580
malus_domestica MD03G1265000.v1.1 MD11G1285200.v1.1
prunus_persica Prupe.8G241100_v2.0.a1
pyrus_communis pycom03g21210 pycom11g25280 pycom11g25340
rosa_chinensis RchiOBHm_Chr6g0291051
rosa_laevigata RLG00000012151
rosa_multiflora Rmu_sc0004642.1_g000003
rosa_roxburghii Rroxscaffold_7G00176420
rosa_rugosa Rorug06G0217200
rosa_samantha Rh6AG327300 Rh6BG334800 Rh6CG341000 Rh6DG328300
rosa_wichuraiana Rw6G028470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 551
AccBSI CCGCTC 1 cut(s) 661
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 74
AciI CCGC 3 cut(s) 72, 602, 661
AclWI GGATC 1 cut(s) 194
AcuI CTGAAG 2 cut(s) 320, 581
AfaI GTAC 1 cut(s) 476
AfeI AGCGCT 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 551
AgsI TTSAA 3 cut(s) 35, 250, 466
AluBI AGCT 5 cut(s) 120, 310, 344, 356, 559
AluI AGCT 5 cut(s) 120, 310, 344, 356, 559
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 2 cut(s) 309, 456
AlwI GGATC 1 cut(s) 194
Aor51HI AGCGCT 1 cut(s) 110
AoxI GGCC 2 cut(s) 541, 722
ApeKI GCWGC 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 139
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 542
AsuHPI GGTGA 2 cut(s) 18, 524
AxyI CCTNAGG 1 cut(s) 726
BanII GRGCYC 2 cut(s) 122, 419
BarI GAAGNNNNNNTAC 2 cut(s) 458, 490
BbsI GAAGAC 2 cut(s) 69, 261
Bbv12I GWGCWC 1 cut(s) 122
BccI CCATC 5 cut(s) 31, 62, 503, 545, 695
BcoDI GTCTC 2 cut(s) 309, 456
BfaI CTAG 2 cut(s) 353, 615
BfmI CTRYAG 1 cut(s) 125
BfoI RGCGCY 1 cut(s) 112
BisI GCNGC 2 cut(s) 6, 603
BlpI GCTNAGC 1 cut(s) 357
BlsI GCNGC 2 cut(s) 7, 604
BmgT120I GGNCC 1 cut(s) 542
BmsI GCATC 1 cut(s) 252
BoxI GACNNNNGTC 1 cut(s) 483
BpiI GAAGAC 2 cut(s) 69, 261
BplI GAGNNNNNCTC 2 cut(s) 401, 433
BpmI CTGGAG 3 cut(s) 136, 148, 695
Bpu1102I GCTNAGC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 608
Bsa29I ATCGAT 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 1 cut(s) 551
Bse1I ACTGG 1 cut(s) 29
Bse21I CCTNAGG 1 cut(s) 726
Bse3DI GCAATG 2 cut(s) 288, 487
BseCI ATCGAT 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 551
BseMI GCAATG 2 cut(s) 288, 487
BseMII CTCAG 5 cut(s) 320, 417, 432, 709, 717
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 7 cut(s) 40, 72, 88, 422, 425, 692, 695
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 2 cut(s) 543, 724
BshVI ATCGAT 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 551
BsmAI GTCTC 2 cut(s) 309, 456
BsnI GGCC 2 cut(s) 543, 724
Bsp1286I GDGCHC 2 cut(s) 122, 419
Bsp143I GATC 3 cut(s) 154, 199, 349
Bsp1720I GCTNAGC 1 cut(s) 357
BspACI CCGC 3 cut(s) 72, 602, 661
BspANI GGCC 2 cut(s) 543, 724
BspCNI CTCAG 5 cut(s) 319, 416, 431, 708, 718
BspDI ATCGAT 1 cut(s) 138
BspFNI CGCG 1 cut(s) 74
BspPI GGATC 1 cut(s) 194
BspQI GCTCTTC 1 cut(s) 339
BsrBI CCGCTC 1 cut(s) 661
BsrDI GCAATG 2 cut(s) 288, 487
BsrI ACTGG 1 cut(s) 29
BssMI GATC 3 cut(s) 154, 199, 349
Bst4CI ACNGT 1 cut(s) 485
Bst6I CTCTTC 4 cut(s) 92, 339, 441, 461
BstDEI CTNAG 7 cut(s) 306, 357, 403, 418, 493, 695, 726
BstFNI CGCG 1 cut(s) 74
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 3 cut(s) 157, 202, 352
BstMAI GTCTC 2 cut(s) 309, 456
BstMBI GATC 3 cut(s) 154, 199, 349
BstMWI GCNNNNNNNGC 4 cut(s) 117, 396, 599, 611
BstPAI GACNNNNGTC 1 cut(s) 483
BstSFI CTRYAG 1 cut(s) 125
BstUI CGCG 1 cut(s) 74
BstV2I GAAGAC 2 cut(s) 69, 261
BstXI CCANNNNNNTGG 1 cut(s) 577
Bsu15I ATCGAT 1 cut(s) 138
Bsu36I CCTNAGG 1 cut(s) 726
BsuRI GGCC 2 cut(s) 543, 724
BsuTUI ATCGAT 1 cut(s) 138
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 542
ClaI ATCGAT 1 cut(s) 138
CseI GACGC 1 cut(s) 63
Csp6I GTAC 1 cut(s) 475
CspCI CAANNNNNGTGG 2 cut(s) 351, 386
CviAII CATG 3 cut(s) 455, 527, 751
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 7 cut(s) 306, 357, 403, 418, 493, 695, 726
DpnI GATC 3 cut(s) 156, 201, 351
DpnII GATC 3 cut(s) 154, 199, 349
Eam1104I CTCTTC 4 cut(s) 92, 339, 441, 461
EarI CTCTTC 4 cut(s) 92, 339, 441, 461
Ecl136II GAGCTC 1 cut(s) 120
Eco147I AGGCCT 1 cut(s) 724
Eco24I GRGCYC 2 cut(s) 122, 419
Eco47III AGCGCT 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 120
Eco57I CTGAAG 2 cut(s) 320, 581
Eco81I CCTNAGG 1 cut(s) 726
EcoICRI GAGCTC 1 cut(s) 120
EcoT38I GRGCYC 2 cut(s) 122, 419
FaeI CATG 3 cut(s) 458, 530, 754
FaiI YATR 8 cut(s) 213, 215, 456, 528, 590, 653, 752, 775
FatI CATG 3 cut(s) 454, 526, 750
FauNDI CATATG 1 cut(s) 213
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 6, 603
FriOI GRGCYC 2 cut(s) 122, 419
Fsp4HI GCNGC 2 cut(s) 6, 603
FspBI CTAG 2 cut(s) 353, 615
GlaI GCGC 1 cut(s) 110
GluI GCNGC 2 cut(s) 6, 603
GsuI CTGGAG 3 cut(s) 136, 148, 695
HaeII RGCGCY 1 cut(s) 112
HaeIII GGCC 2 cut(s) 543, 724
HgaI GACGC 1 cut(s) 63
HhaI GCGC 1 cut(s) 111
Hin1II CATG 3 cut(s) 458, 530, 754
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 9 cut(s) 47, 135, 140, 168, 257, 284, 449, 518, 747
HphI GGTGA 2 cut(s) 18, 524
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 7 cut(s) 103, 316, 406, 421, 640, 698, 782
Hpy188III TCNNGA 3 cut(s) 115, 165, 197
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 3 cut(s) 213, 244, 766
HpyCH4III ACNGT 1 cut(s) 485
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 1 cut(s) 655
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 396, 599, 611
HpyF3I CTNAG 7 cut(s) 306, 357, 403, 418, 493, 695, 726
HpySE526I ACGT 1 cut(s) 235
Hsp92II CATG 3 cut(s) 458, 530, 754
HspAI GCGC 1 cut(s) 109
Kzo9I GATC 3 cut(s) 154, 199, 349
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 2 cut(s) 117, 341
LpnPI CCDG 8 cut(s) 42, 100, 178, 210, 323, 563, 659, 738
LweI GCATC 1 cut(s) 252
MaeI CTAG 2 cut(s) 353, 615
MaeII ACGT 1 cut(s) 235
MalI GATC 3 cut(s) 156, 201, 351
MbiI CCGCTC 1 cut(s) 661
MboI GATC 3 cut(s) 154, 199, 349
MfeI CAATTG 1 cut(s) 392
MhlI GDGCHC 2 cut(s) 122, 419
MluCI AATT 1 cut(s) 392
MlyI GAGTC 3 cut(s) 41, 251, 458
MmeI TCCRAC 2 cut(s) 202, 618
MroXI GAANNNNTTC 1 cut(s) 139
MslI CAYNNNNRTG 2 cut(s) 216, 531
MspA1I CMGCKG 1 cut(s) 310
MunI CAATTG 1 cut(s) 392
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 4 cut(s) 117, 396, 599, 611
NdeI CATATG 1 cut(s) 213
NdeII GATC 3 cut(s) 154, 199, 349
NlaIII CATG 3 cut(s) 458, 530, 754
PceI AGGCCT 1 cut(s) 724
PciSI GCTCTTC 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 644
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 6 cut(s) 135, 140, 168, 284, 518, 747
PflMI CCANNNNNTGG 1 cut(s) 551
PkrI GCNGC 2 cut(s) 7, 604
PleI GAGTC 3 cut(s) 41, 251, 457
PpsI GAGTC 3 cut(s) 41, 251, 457
PshAI GACNNNNGTC 1 cut(s) 483
Psp124BI GAGCTC 1 cut(s) 122
PspPI GGNCC 1 cut(s) 542
PvuII CAGCTG 1 cut(s) 310
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
RseI CAYNNNNRTG 2 cut(s) 216, 531
SacI GAGCTC 1 cut(s) 122
SalI GTCGAC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 339
SatI GCNGC 2 cut(s) 6, 603
Sau3AI GATC 3 cut(s) 154, 199, 349
Sau96I GGNCC 1 cut(s) 542
SchI GAGTC 3 cut(s) 41, 251, 458
SduI GDGCHC 2 cut(s) 122, 419
SetI ASST 7 cut(s) 122, 238, 312, 346, 358, 561, 638
SfaNI GCATC 1 cut(s) 252
SfcI CTRYAG 1 cut(s) 125
SmiMI CAYNNNNRTG 2 cut(s) 216, 531
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
Sse9I AATT 1 cut(s) 392
SseBI AGGCCT 1 cut(s) 724
SsiI CCGC 3 cut(s) 72, 602, 661
SspMI CTAG 2 cut(s) 353, 615
SstI GAGCTC 1 cut(s) 122
StuI AGGCCT 1 cut(s) 724
TaaI ACNGT 1 cut(s) 485
TaiI ACGT 1 cut(s) 238
TaqI TCGA 4 cut(s) 15, 138, 260, 759
TasI AATT 1 cut(s) 392
TauI GCSGC 1 cut(s) 605
TfiI GAWTC 6 cut(s) 135, 140, 168, 284, 518, 747
TscAI CASTG 1 cut(s) 70
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 3 cut(s) 230, 543, 739
TspRI CASTG 1 cut(s) 70
Van91I CCANNNNNTGG 1 cut(s) 551
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 139
XspI CTAG 2 cut(s) 353, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.