RLG00000012151

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012509
Physical Location & Seq
Reverse (-)
15760003 .. 15761479
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012151

Sequence Viewer

Length: 1068 bp
ATGGCTGCTTCAGTCGACACTCCATCACCAGTTCAACTCAACAGGGACTCCTCCTCCATCTTCTTCACTGCTTCCGCTTCTTCTCCTCTCTTCACTCCCTCCTCCGATAAGCGCTTCTGGAGCTCTCTACAGACCCGAATCGATTCCATTCTCCAAGATCGCAACTCCAGAATCCCAATGGCTCAAAACCCACCAAATCCTGATCCTTCTCTACATATGAATGTTGGAGAAGCGAAACGTGGGAGAGGATTGAAGGAAGACTCGATGCTTTTGATGAGAGGGTTTGATTCGATAGCTCACACTTTGTCTCAGCTGTCTGACACTTTAGACAATGCTCTTCAGGGAGCTAATGATCTAGCTAAGCCACCCACATTGACAGAGATATTCCACAGCCAATTGAGCAACTCAGAGAGCAAAGAGGAGGGCTCAGAAGAACAACAACAGAACCCAGAAGAGTCTCGTGTAGGATTGAAGAGGAAGTACGACAGCAGTCATTGCTTGGAGGAACAAGGAGATGGTGATGATTCACAACATGAAAATGAGCAAGGCCCAAAAGATGGGAAGCTGAAGAAAGCCAAAAACCTGGCGATTTCTATGGCAACCAAGGCGGCTTCATTTGCTAGGGAACTCAAGTTGATTAGGTCAGATTTATCGTTTATGCAAGAGCGGTGTGCTTTGCTGGAGGAGGAGAATAGGAGGCTCAGAGATGGATTTGACAAGGGGTTGAGGCCTGAGGAAGATGATTTGGTGAGGCTTCAATTGGAGGCACTGCTAGCTGAGAAATCAAGATTAGCAAATGAGAATGCAAATCTGGTTAGAGAAAACCAATGCCTCCACCAACTTGTGGAGTACCACCAGCTTACCTCTCAAGACCTGTCTGCTTCATCATACGAACAAGTTATACAAGGGTTGTGCTTAGACTTCTCGTCTCCACCGCCACCAATACCAGAAGAGGAGGCAGCAAACGACGAAGAGAGTGTAGAATCTGAAGATGATGCAACAACCCCAAGAACTAATCTTTTTGGCTTACACTCATCTTTTGATGAGCATTATCAAGGAGATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

39.59

Weight (kDa)

4.71

Isoelectric Point (pI)

60.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012509)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02800
fragaria_vesca FvH4_2g23580 FvH4_2g23580
malus_domestica MD03G1265000.v1.1 MD11G1285200.v1.1
prunus_persica Prupe.8G241100_v2.0.a1
pyrus_communis pycom03g21210 pycom11g25280 pycom11g25340
rosa_chinensis RchiOBHm_Chr6g0291051
rosa_laevigata RLG00000012151
rosa_multiflora Rmu_sc0004642.1_g000003
rosa_roxburghii Rroxscaffold_7G00176420
rosa_rugosa Rorug06G0217200
rosa_samantha Rh6AG327300 Rh6BG334800 Rh6CG341000 Rh6DG328300
rosa_wichuraiana Rw6G028470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 557, 844
AccBSI CCGCTC 1 cut(s) 667
AccI GTMKAC 1 cut(s) 15
AciI CCGC 4 cut(s) 75, 608, 667, 935
AclWI GGATC 1 cut(s) 197
AcuI CTGAAG 3 cut(s) 323, 587, 1008
AfaI GTAC 2 cut(s) 482, 851
AfeI AGCGCT 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 557, 844
AgsI TTSAA 4 cut(s) 35, 253, 472, 758
AhdI GACNNNNNGTC 1 cut(s) 925
AjnI CCWGG 1 cut(s) 582
AluBI AGCT 8 cut(s) 123, 296, 313, 347, 359, 565, 776, 859
AluI AGCT 8 cut(s) 123, 296, 313, 347, 359, 565, 776, 859
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 3 cut(s) 312, 462, 933
AlwI GGATC 1 cut(s) 197
Aor51HI AGCGCT 1 cut(s) 113
AoxI GGCC 2 cut(s) 547, 728
ApeKI GCWGC 2 cut(s) 5, 959
Asp700I GAANNNNTTC 1 cut(s) 142
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 548
AsuHPI GGTGA 3 cut(s) 18, 530, 760
AsuNHI GCTAGC 1 cut(s) 772
AxyI CCTNAGG 1 cut(s) 732
BanII GRGCYC 2 cut(s) 125, 428
BarI GAAGNNNNNNTAC 2 cut(s) 464, 496
BauI CACGAG 1 cut(s) 459
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 971
BccI CCATC 5 cut(s) 31, 65, 509, 551, 701
BciT130I CCWGG 1 cut(s) 584
BcoDI GTCTC 3 cut(s) 312, 462, 933
BfaI CTAG 3 cut(s) 356, 621, 773
BfmI CTRYAG 1 cut(s) 128
BfoI RGCGCY 1 cut(s) 115
BisI GCNGC 3 cut(s) 6, 609, 960
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 3 cut(s) 7, 610, 961
Bme1390I CCNGG 1 cut(s) 584
BmeRI GACNNNNNGTC 1 cut(s) 925
BmgT120I GGNCC 1 cut(s) 548
BmrFI CCNGG 1 cut(s) 584
BmsI GCATC 2 cut(s) 255, 985
BmtI GCTAGC 1 cut(s) 776
BoxI GACNNNNGTC 1 cut(s) 489
BpiI GAAGAC 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 410, 442
BpmI CTGGAG 3 cut(s) 139, 151, 701
Bpu1102I GCTNAGC 1 cut(s) 360
BpuEI CTTGAG 2 cut(s) 614, 852
Bsa29I ATCGAT 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 603
BsaXI ACNNNNNCTCC 4 cut(s) 32, 38, 62, 68
Bsc4I CCNNNNNNNGG 2 cut(s) 557, 844
Bse1I ACTGG 1 cut(s) 29
Bse21I CCTNAGG 1 cut(s) 732
Bse3DI GCAATG 1 cut(s) 493
BseBI CCWGG 1 cut(s) 584
BseCI ATCGAT 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 603
BseLI CCNNNNNNNGG 2 cut(s) 557, 844
BseMI GCAATG 1 cut(s) 493
BseMII CTCAG 6 cut(s) 323, 420, 441, 715, 723, 768
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 8 cut(s) 40, 43, 75, 91, 434, 698, 701, 968
BseXI GCAGC 1 cut(s) 971
BshFI GGCC 2 cut(s) 549, 730
BshVI ATCGAT 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 125
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 2 cut(s) 557, 844
BsmAI GTCTC 3 cut(s) 312, 462, 933
BsmBI CGTCTC 1 cut(s) 933
BsmFI GGGAC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 808
BsnI GGCC 2 cut(s) 549, 730
Bsp1286I GDGCHC 2 cut(s) 125, 428
Bsp143I GATC 3 cut(s) 157, 202, 352
Bsp1720I GCTNAGC 1 cut(s) 360
BspACI CCGC 4 cut(s) 75, 608, 667, 935
BspANI GGCC 2 cut(s) 549, 730
BspCNI CTCAG 6 cut(s) 322, 419, 440, 714, 724, 769
BspDI ATCGAT 1 cut(s) 141
BspOI GCTAGC 1 cut(s) 776
BspPI GGATC 1 cut(s) 197
BspQI GCTCTTC 1 cut(s) 342
BsrBI CCGCTC 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 493
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 603
BssMI GATC 3 cut(s) 157, 202, 352
BssSI CACGAG 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 603
Bst2BI CACGAG 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 584
Bst6I CTCTTC 6 cut(s) 95, 342, 447, 467, 945, 966
BstAPI GCANNNNNTGC 1 cut(s) 495
BstC8I GCNNGC 1 cut(s) 774
BstDEI CTNAG 8 cut(s) 309, 360, 406, 427, 701, 732, 777, 916
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 3 cut(s) 160, 205, 355
BstMAI GTCTC 3 cut(s) 312, 462, 933
BstMBI GATC 3 cut(s) 157, 202, 352
BstMWI GCNNNNNNNGC 6 cut(s) 120, 399, 495, 605, 617, 773
BstNI CCWGG 1 cut(s) 584
BstPAI GACNNNNGTC 1 cut(s) 489
BstSCI CCNGG 1 cut(s) 582
BstSFI CTRYAG 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 971
BstV2I GAAGAC 1 cut(s) 264
BstXI CCANNNNNNTGG 1 cut(s) 583
Bsu15I ATCGAT 1 cut(s) 141
Bsu36I CCTNAGG 1 cut(s) 732
BsuRI GGCC 2 cut(s) 549, 730
BsuTUI ATCGAT 1 cut(s) 141
BtsI GCAGTG 2 cut(s) 66, 767
BtsIMutI CAGTG 2 cut(s) 66, 767
Cac8I GCNNGC 1 cut(s) 774
CfoI GCGC 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 548
ClaI ATCGAT 1 cut(s) 141
Csp6I GTAC 2 cut(s) 481, 850
CspCI CAANNNNNGTGG 2 cut(s) 354, 389
CviAII CATG 1 cut(s) 533
CviQI GTAC 2 cut(s) 481, 850
DdeI CTNAG 8 cut(s) 309, 360, 406, 427, 701, 732, 777, 916
DpnI GATC 3 cut(s) 159, 204, 354
DpnII GATC 3 cut(s) 157, 202, 352
DriI GACNNNNNGTC 1 cut(s) 925
Eam1104I CTCTTC 6 cut(s) 95, 342, 447, 467, 945, 966
Eam1105I GACNNNNNGTC 1 cut(s) 925
EarI CTCTTC 6 cut(s) 95, 342, 447, 467, 945, 966
Ecl136II GAGCTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 603
Eco147I AGGCCT 1 cut(s) 730
Eco24I GRGCYC 2 cut(s) 125, 428
Eco47III AGCGCT 1 cut(s) 113
Eco53kI GAGCTC 1 cut(s) 123
Eco57I CTGAAG 3 cut(s) 323, 587, 1008
Eco81I CCTNAGG 1 cut(s) 732
EcoICRI GAGCTC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 582
EcoT14I CCWWGG 1 cut(s) 603
EcoT38I GRGCYC 2 cut(s) 125, 428
ErhI CCWWGG 1 cut(s) 603
Esp3I CGTCTC 1 cut(s) 933
FaeI CATG 1 cut(s) 536
FaiI YATR 7 cut(s) 216, 218, 534, 596, 659, 889, 902
FaqI GGGAC 1 cut(s) 59
FatI CATG 1 cut(s) 532
FauNDI CATATG 1 cut(s) 216
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 3 cut(s) 6, 609, 960
FriOI GRGCYC 2 cut(s) 125, 428
Fsp4HI GCNGC 3 cut(s) 6, 609, 960
FspBI CTAG 3 cut(s) 356, 621, 773
GlaI GCGC 1 cut(s) 113
GluI GCNGC 3 cut(s) 6, 609, 960
GsuI CTGGAG 3 cut(s) 139, 151, 701
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 2 cut(s) 549, 730
HhaI GCGC 1 cut(s) 114
Hin1II CATG 1 cut(s) 536
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 9 cut(s) 47, 138, 143, 171, 260, 287, 455, 524, 983
HphI GGTGA 3 cut(s) 18, 530, 760
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 7 cut(s) 106, 319, 409, 430, 646, 704, 988
Hpy188III TCNNGA 5 cut(s) 118, 168, 200, 786, 869
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 971
HpyAV CCTTC 2 cut(s) 216, 247
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 3 cut(s) 661, 806, 998
HpyF10VI GCNNNNNNNGC 6 cut(s) 120, 399, 495, 605, 617, 773
HpyF3I CTNAG 8 cut(s) 309, 360, 406, 427, 701, 732, 777, 916
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 1 cut(s) 536
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 3 cut(s) 157, 202, 352
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 2 cut(s) 120, 344
Lsp1109I GCAGC 1 cut(s) 971
LweI GCATC 2 cut(s) 255, 985
MaeI CTAG 3 cut(s) 356, 621, 773
MaeII ACGT 1 cut(s) 238
MalI GATC 3 cut(s) 159, 204, 354
MbiI CCGCTC 1 cut(s) 667
MboI GATC 3 cut(s) 157, 202, 352
MfeI CAATTG 2 cut(s) 395, 758
MhlI GDGCHC 2 cut(s) 125, 428
MluCI AATT 2 cut(s) 395, 758
MlyI GAGTC 3 cut(s) 41, 254, 464
MmeI TCCRAC 1 cut(s) 205
MroXI GAANNNNTTC 1 cut(s) 142
MslI CAYNNNNRTG 2 cut(s) 219, 537
MspA1I CMGCKG 1 cut(s) 313
MspR9I CCNGG 1 cut(s) 584
MunI CAATTG 2 cut(s) 395, 758
Mva1269I GAATGC 1 cut(s) 808
MvaI CCWGG 1 cut(s) 584
MwoI GCNNNNNNNGC 6 cut(s) 120, 399, 495, 605, 617, 773
NdeI CATATG 1 cut(s) 216
NdeII GATC 3 cut(s) 157, 202, 352
NheI GCTAGC 1 cut(s) 772
NlaIII CATG 1 cut(s) 536
PceI AGGCCT 1 cut(s) 730
PciSI GCTCTTC 1 cut(s) 342
PctI GAATGC 1 cut(s) 808
PdmI GAANNNNTTC 1 cut(s) 142
PfeI GAWTC 6 cut(s) 138, 143, 171, 287, 524, 983
PflMI CCANNNNNTGG 2 cut(s) 557, 844
PkrI GCNGC 3 cut(s) 7, 610, 961
PleI GAGTC 3 cut(s) 41, 254, 463
PpsI GAGTC 3 cut(s) 41, 254, 463
PshAI GACNNNNGTC 1 cut(s) 489
Psp124BI GAGCTC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 582
PspGI CCWGG 1 cut(s) 582
PspPI GGNCC 1 cut(s) 548
PsrI GAACNNNNNNTAC 2 cut(s) 885, 917
PvuII CAGCTG 1 cut(s) 313
RsaI GTAC 2 cut(s) 482, 851
RsaNI GTAC 2 cut(s) 481, 850
RseI CAYNNNNRTG 2 cut(s) 219, 537
SacI GAGCTC 1 cut(s) 125
SalI GTCGAC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 342
SatI GCNGC 3 cut(s) 6, 609, 960
Sau3AI GATC 3 cut(s) 157, 202, 352
Sau96I GGNCC 1 cut(s) 548
SchI GAGTC 3 cut(s) 41, 254, 464
ScrFI CCNGG 1 cut(s) 584
SduI GDGCHC 2 cut(s) 125, 428
SfaNI GCATC 2 cut(s) 255, 985
SfcI CTRYAG 1 cut(s) 128
SmiMI CAYNNNNRTG 2 cut(s) 219, 537
SmlI CTYRAG 2 cut(s) 629, 867
SmoI CTYRAG 2 cut(s) 629, 867
Sse9I AATT 2 cut(s) 395, 758
SseBI AGGCCT 1 cut(s) 730
SsiI CCGC 4 cut(s) 75, 608, 667, 935
SspMI CTAG 3 cut(s) 356, 621, 773
SstI GAGCTC 1 cut(s) 125
StuI AGGCCT 1 cut(s) 730
StyD4I CCNGG 1 cut(s) 582
StyI CCWWGG 1 cut(s) 603
TaiI ACGT 1 cut(s) 241
TaqI TCGA 4 cut(s) 15, 141, 263, 290
TasI AATT 2 cut(s) 395, 758
TauI GCSGC 1 cut(s) 611
TfiI GAWTC 6 cut(s) 138, 143, 171, 287, 524, 983
TscAI CASTG 2 cut(s) 73, 774
TseI GCWGC 2 cut(s) 5, 959
TspDTI ATGAA 4 cut(s) 233, 549, 603, 873
TspRI CASTG 2 cut(s) 73, 774
Van91I CCANNNNNTGG 2 cut(s) 557, 844
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 142
XspI CTAG 3 cut(s) 356, 621, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.