Prupe.8G241100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0012509
Physical Location & Seq
Forward (+)
21120902 .. 21122707
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G241100.1

Sequence Viewer

Length: 1074 bp
ATGGCAGCTTCGGTGGATACACCATCACCTACCCACCTGAACCACAAGGCTACAAGCTTATTCATGGCTTCTTCTTCTTCTTCTCCTCTGTTCAGTCCCTCCTCAGATAAGCGCTTTTGGAGCTCTCTCCGCAGCCGGATCGACACTCTTCTCGACGATCCCAGCTCCAAAATCCCAACTGCCCAAAACCCACCAAATGCTGATCCCTCTCTACCAGTTCAAATGAATGTTGGAGGATTGAAGCGTGCAATAGCAACGAAAGAAGACTCGTTGCTTTTGATGAGAGGCTTTGACTCCATAGCTCACACTTTGTCGCAGCTGTCCAACACTTTAGAGACTGCTCTTCAGGGAGCCAACGATCTAGCTAAGCCACCCACATTAACTGAGATATTCCATGGCCACCTCAACAAATCTGAGAGTAAAGAGAAGGAGGAGGACTCAGAAGACCAGAAGAATGCAGAAGATCCCCATGTAGGACTGAAAAGGAAGTTTGACAACAGCCATTGCTCAGAGGATCAAGGAGACGACTCAAAAAAGGAAAATGAGCAAGACCCCAAAGATGGGAAGCTGAAGAAAGCTAAAAATCTTGCAATTTCTATGGCAACCAAAGCAACTTCGTTTGCCAGAGAACTGAAGTCGATAAGGTCAGATTTATGCTTTATGCAAGAGCGCTGTGCTCTGTTGGAGGAGGAGAACAGGAGGCTCCGAGATGGATTGGAAAAAGGGTTGAGGCCTGAGGAAGATGATCTGGTGAGGCTTCAATTGGAGGCACTGCTAGCTGAGAAATCAAGATTAGCAAATGAAAATGCAAATCTGGTTAGGGAAAACCAATGCCTCAATCAACTTGTGGAGTACCACCAGCTAACCTCCCATGACCTCTCTGCGTCATATGAACAAGTTATACAAGGGTTGTGCTTAGACTTCTCGTCTCCACCACGACCGATAGCAGAAGAGGCAAACGAAGAAGATGGTGAAGATGATGGTGATAATGAAGTTTCTCAAACACCCCAAACCAATCTTTTTGGATTCTCTGCACCTCTTGATGATGATGTGTGTTCTCGCGAAGATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

358

Amino Acids

39.59

Weight (kDa)

4.78

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012509)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02800
fragaria_vesca FvH4_2g23580 FvH4_2g23580
malus_domestica MD03G1265000.v1.1 MD11G1285200.v1.1
prunus_persica Prupe.8G241100_v2.0.a1
pyrus_communis pycom03g21210 pycom11g25280 pycom11g25340
rosa_chinensis RchiOBHm_Chr6g0291051
rosa_laevigata RLG00000012151
rosa_multiflora Rmu_sc0004642.1_g000003
rosa_roxburghii Rroxscaffold_7G00176420
rosa_rugosa Rorug06G0217200
rosa_samantha Rh6AG327300 Rh6BG334800 Rh6CG341000 Rh6DG328300
rosa_wichuraiana Rw6G028470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1062
AciI CCGC 1 cut(s) 130
AclWI GGATC 5 cut(s) 146, 152, 197, 458, 522
AcoI YGGCCR 1 cut(s) 397
AcuI CTGAAG 3 cut(s) 329, 590, 653
AfaI GTAC 1 cut(s) 854
AfeI AGCGCT 2 cut(s) 113, 671
AfiI CCNNNNNNNGG 3 cut(s) 473, 560, 561
AgsI TTSAA 3 cut(s) 221, 241, 761
AhdI GACNNNNNGTC 1 cut(s) 925
Alw21I GWGCWC 2 cut(s) 125, 679
Alw26I GTCTC 3 cut(s) 329, 516, 933
AlwI GGATC 5 cut(s) 146, 152, 197, 458, 522
Aor51HI AGCGCT 2 cut(s) 113, 671
AoxI GGCC 2 cut(s) 397, 731
ApeKI GCWGC 3 cut(s) 5, 132, 316
AspLEI GCGC 2 cut(s) 114, 672
AsuHPI GGTGA 4 cut(s) 18, 763, 983, 995
AsuNHI GCTAGC 1 cut(s) 775
AxyI CCTNAGG 1 cut(s) 735
BalI TGGCCA 1 cut(s) 399
BanII GRGCYC 1 cut(s) 125
BbsI GAAGAC 2 cut(s) 270, 450
Bbv12I GWGCWC 2 cut(s) 125, 679
BbvI GCAGC 3 cut(s) 17, 144, 328
BccI CCATC 5 cut(s) 31, 554, 704, 962, 974
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BciVI GTATCC 1 cut(s) 10
BcoDI GTCTC 3 cut(s) 329, 516, 933
BfaI CTAG 2 cut(s) 362, 776
BfoI RGCGCY 2 cut(s) 115, 673
BfuI GTATCC 1 cut(s) 10
BisI GCNGC 3 cut(s) 6, 133, 317
BlpI GCTNAGC 1 cut(s) 366
BlsI GCNGC 3 cut(s) 7, 134, 318
BmeRI GACNNNNNGTC 1 cut(s) 925
BmiI GGNNCC 2 cut(s) 352, 704
BmtI GCTAGC 1 cut(s) 779
BpiI GAAGAC 2 cut(s) 270, 450
BplI GAGNNNNNCTC 2 cut(s) 422, 454
Bpu1102I GCTNAGC 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 394
Bsc4I CCNNNNNNNGG 3 cut(s) 473, 560, 561
Bse1I ACTGG 1 cut(s) 215
Bse21I CCTNAGG 1 cut(s) 735
Bse3DI GCAATG 1 cut(s) 502
BseDI CCNNGG 1 cut(s) 394
BseLI CCNNNNNNNGG 3 cut(s) 473, 560, 561
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 7 cut(s) 117, 375, 405, 453, 522, 726, 771
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 5 cut(s) 75, 91, 446, 701, 704
BseXI GCAGC 3 cut(s) 17, 144, 328
BseYI CCCAGC 1 cut(s) 161
BsgI GTGCAG 1 cut(s) 1017
Bsh1236I CGCG 1 cut(s) 1062
Bsh1285I CGRYCG 1 cut(s) 941
BshFI GGCC 2 cut(s) 399, 733
BsiEI CGRYCG 1 cut(s) 941
BsiHKAI GWGCWC 2 cut(s) 125, 679
BsiSI CCGG 1 cut(s) 136
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 3 cut(s) 473, 560, 561
BsmAI GTCTC 3 cut(s) 329, 516, 933
BsmBI CGTCTC 2 cut(s) 516, 933
BsmFI GGGAC 1 cut(s) 81
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 2 cut(s) 399, 733
Bsp1286I GDGCHC 2 cut(s) 125, 679
Bsp143I GATC 8 cut(s) 138, 157, 202, 358, 463, 514, 745, 1066
Bsp1720I GCTNAGC 1 cut(s) 366
Bsp19I CCATGG 1 cut(s) 394
Bsp68I TCGCGA 1 cut(s) 1062
BspACI CCGC 1 cut(s) 130
BspANI GGCC 2 cut(s) 399, 733
BspCNI CTCAG 7 cut(s) 116, 376, 406, 452, 521, 727, 772
BspFNI CGCG 1 cut(s) 1062
BspLI GGNNCC 2 cut(s) 352, 704
BspOI GCTAGC 1 cut(s) 779
BspPI GGATC 5 cut(s) 146, 152, 197, 458, 522
BspQI GCTCTTC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 502
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 8 cut(s) 138, 157, 202, 358, 463, 514, 745, 1066
BssT1I CCWWGG 1 cut(s) 394
Bst6I CTCTTC 3 cut(s) 153, 348, 945
BstC8I GCNNGC 2 cut(s) 246, 777
BstDEI CTNAG 9 cut(s) 103, 366, 384, 414, 439, 508, 735, 780, 916
BstDSI CCRYGG 1 cut(s) 394
BstFNI CGCG 1 cut(s) 1062
BstH2I RGCGCY 2 cut(s) 115, 673
BstHHI GCGC 2 cut(s) 114, 672
BstKTI GATC 8 cut(s) 141, 160, 205, 361, 466, 517, 748, 1069
BstMAI GTCTC 3 cut(s) 329, 516, 933
BstMBI GATC 8 cut(s) 138, 157, 202, 358, 463, 514, 745, 1066
BstMCI CGRYCG 1 cut(s) 941
BstMWI GCNNNNNNNGC 5 cut(s) 120, 129, 608, 776, 953
BstUI CGCG 1 cut(s) 1062
BstV1I GCAGC 3 cut(s) 17, 144, 328
BstV2I GAAGAC 2 cut(s) 270, 450
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
Bsu36I CCTNAGG 1 cut(s) 735
BsuI GTATCC 1 cut(s) 10
BsuRI GGCC 2 cut(s) 399, 733
BtgI CCRYGG 1 cut(s) 394
BtsI GCAGTG 1 cut(s) 770
BtsIMutI CAGTG 1 cut(s) 770
BtuMI TCGCGA 1 cut(s) 1062
Cac8I GCNNGC 2 cut(s) 246, 777
CfoI GCGC 2 cut(s) 114, 672
CseI GACGC 1 cut(s) 873
Csp6I GTAC 1 cut(s) 853
CviAII CATG 4 cut(s) 64, 395, 470, 872
CviQI GTAC 1 cut(s) 853
DdeI CTNAG 9 cut(s) 103, 366, 384, 414, 439, 508, 735, 780, 916
DpnI GATC 8 cut(s) 140, 159, 204, 360, 465, 516, 747, 1068
DpnII GATC 8 cut(s) 138, 157, 202, 358, 463, 514, 745, 1066
DriI GACNNNNNGTC 1 cut(s) 925
EaeI YGGCCR 1 cut(s) 397
Eam1104I CTCTTC 3 cut(s) 153, 348, 945
Eam1105I GACNNNNNGTC 1 cut(s) 925
EarI CTCTTC 3 cut(s) 153, 348, 945
Ecl136II GAGCTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 394
Eco147I AGGCCT 1 cut(s) 733
Eco24I GRGCYC 1 cut(s) 125
Eco47III AGCGCT 2 cut(s) 113, 671
Eco53kI GAGCTC 1 cut(s) 123
Eco57I CTGAAG 3 cut(s) 329, 590, 653
Eco81I CCTNAGG 1 cut(s) 735
EcoICRI GAGCTC 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 394
Esp3I CGTCTC 2 cut(s) 516, 933
FaeI CATG 4 cut(s) 67, 398, 473, 875
FaqI GGGAC 1 cut(s) 81
FatI CATG 4 cut(s) 63, 394, 469, 871
FauNDI CATATG 1 cut(s) 889
Fnu4HI GCNGC 3 cut(s) 6, 133, 317
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 3 cut(s) 6, 133, 317
FspBI CTAG 2 cut(s) 362, 776
GlaI GCGC 2 cut(s) 113, 671
GluI GCNGC 3 cut(s) 6, 133, 317
GsaI CCCAGC 1 cut(s) 165
HaeII RGCGCY 2 cut(s) 115, 673
HaeIII GGCC 2 cut(s) 399, 733
HapII CCGG 1 cut(s) 136
HgaI GACGC 1 cut(s) 873
HhaI GCGC 2 cut(s) 114, 672
Hin1II CATG 4 cut(s) 67, 398, 473, 875
Hin6I GCGC 2 cut(s) 112, 670
HinP1I GCGC 2 cut(s) 112, 670
HindIII AAGCTT 1 cut(s) 55
HinfI GANTC 5 cut(s) 266, 293, 437, 527, 1026
HpaII CCGG 1 cut(s) 136
HphI GGTGA 4 cut(s) 18, 763, 983, 995
Hpy188I TCNGA 6 cut(s) 106, 415, 442, 511, 649, 707
Hpy188III TCNNGA 4 cut(s) 152, 789, 1040, 1061
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 421
HpyCH4V TGCA 6 cut(s) 248, 458, 590, 664, 809, 1034
HpyF10VI GCNNNNNNNGC 5 cut(s) 120, 129, 608, 776, 953
HpyF3I CTNAG 9 cut(s) 103, 366, 384, 414, 439, 508, 735, 780, 916
Hsp92II CATG 4 cut(s) 67, 398, 473, 875
HspAI GCGC 2 cut(s) 112, 670
Kzo9I GATC 8 cut(s) 138, 157, 202, 358, 463, 514, 745, 1066
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 4 cut(s) 120, 170, 350, 708
Lsp1109I GCAGC 3 cut(s) 17, 144, 328
MaeI CTAG 2 cut(s) 362, 776
MalI GATC 8 cut(s) 140, 159, 204, 360, 465, 516, 747, 1068
MboI GATC 8 cut(s) 138, 157, 202, 358, 463, 514, 745, 1066
MfeI CAATTG 1 cut(s) 761
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 2 cut(s) 125, 679
MlsI TGGCCA 1 cut(s) 399
MluCI AATT 2 cut(s) 591, 761
MluNI TGGCCA 1 cut(s) 399
MlyI GAGTC 4 cut(s) 260, 287, 431, 521
MmeI TCCRAC 3 cut(s) 211, 348, 663
Mox20I TGGCCA 1 cut(s) 399
MscI TGGCCA 1 cut(s) 399
MseI TTAA 1 cut(s) 380
Msp20I TGGCCA 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 1 cut(s) 136
MunI CAATTG 1 cut(s) 761
Mva1269I GAATGC 1 cut(s) 460
MvnI CGCG 1 cut(s) 1062
MwoI GCNNNNNNNGC 5 cut(s) 120, 129, 608, 776, 953
NcoI CCATGG 1 cut(s) 394
NdeI CATATG 1 cut(s) 889
NdeII GATC 8 cut(s) 138, 157, 202, 358, 463, 514, 745, 1066
NheI GCTAGC 1 cut(s) 775
NlaIII CATG 4 cut(s) 67, 398, 473, 875
NlaIV GGNNCC 2 cut(s) 352, 704
NruI TCGCGA 1 cut(s) 1062
PceI AGGCCT 1 cut(s) 733
PciSI GCTCTTC 1 cut(s) 348
PctI GAATGC 1 cut(s) 460
PfeI GAWTC 1 cut(s) 1026
PkrI GCNGC 3 cut(s) 7, 134, 318
PleI GAGTC 4 cut(s) 260, 287, 431, 521
PpsI GAGTC 4 cut(s) 260, 287, 431, 521
Psp124BI GAGCTC 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 161
PspN4I GGNNCC 2 cut(s) 352, 704
PsrI GAACNNNNNNTAC 2 cut(s) 885, 917
PsuI RGATCY 1 cut(s) 463
PvuII CAGCTG 1 cut(s) 319
RruI TCGCGA 1 cut(s) 1062
RsaI GTAC 1 cut(s) 854
RsaNI GTAC 1 cut(s) 853
SacI GAGCTC 1 cut(s) 125
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 1 cut(s) 380
SatI GCNGC 3 cut(s) 6, 133, 317
Sau3AI GATC 8 cut(s) 138, 157, 202, 358, 463, 514, 745, 1066
SchI GAGTC 4 cut(s) 260, 287, 431, 521
SduI GDGCHC 2 cut(s) 125, 679
Sse9I AATT 2 cut(s) 591, 761
SseBI AGGCCT 1 cut(s) 733
SsiI CCGC 1 cut(s) 130
SspMI CTAG 2 cut(s) 362, 776
SstI GAGCTC 1 cut(s) 125
StuI AGGCCT 1 cut(s) 733
StyI CCWWGG 1 cut(s) 394
TaqI TCGA 3 cut(s) 141, 153, 638
TaqII GACCGA 1 cut(s) 955
TasI AATT 2 cut(s) 591, 761
TfiI GAWTC 1 cut(s) 1026
Tru1I TTAA 1 cut(s) 380
Tru9I TTAA 1 cut(s) 380
TscAI CASTG 1 cut(s) 777
TseI GCWGC 3 cut(s) 5, 132, 316
TspDTI ATGAA 5 cut(s) 52, 239, 816, 906, 1005
TspRI CASTG 1 cut(s) 777
XspI CTAG 2 cut(s) 362, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.