pycom11g25340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0012509
Physical Location & Seq
Forward (+)
28152448 .. 28152858
411 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g25340.1

Sequence Viewer

Length: 411 bp
ATGCAAGAGCGCTGTGCTCTGCTGGAGGAGGAGAATCGAAGTCTCCGAGACTGGCTGGATAAAGGGTTGAGGTCTGAGGAAGATGATCTGGTGACGCTTCAGTTGGAGGCACTGCTAGCTGAGAGGTCAAGACTAGCAAATGAAAATTCATACCTGGTTAGAGAAAATCAATGCCTCCACCAGGTTGTGGAGTACCACCAGCTCACCTCCCAAGACCTCTCTGCTTCATTTGAACAAGTTGTACAAGGGTTGTGCCTAGACTTTTCGTCTCCTCCACGACCGACAGCAGGCGAGGCAAATGGCGAAGATGGTGATGGTGATGGTGATGCTGCTGCTGAAAACAAGGTTTCTCAGGCACTAAGAAGTGATATTTTCGGCTTCTCTGCCTCGCTTGATGATGGAGATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.07

Weight (kDa)

4.23

Isoelectric Point (pI)

54.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012509)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02800
fragaria_vesca FvH4_2g23580 FvH4_2g23580
malus_domestica MD03G1265000.v1.1 MD11G1285200.v1.1
prunus_persica Prupe.8G241100_v2.0.a1
pyrus_communis pycom03g21210 pycom11g25280 pycom11g25340
rosa_chinensis RchiOBHm_Chr6g0291051
rosa_laevigata RLG00000012151
rosa_multiflora Rmu_sc0004642.1_g000003
rosa_roxburghii Rroxscaffold_7G00176420
rosa_rugosa Rorug06G0217200
rosa_samantha Rh6AG327300 Rh6BG334800 Rh6CG341000 Rh6DG328300
rosa_wichuraiana Rw6G028470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 187
AcsI RAATTY 1 cut(s) 145
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 2 cut(s) 194, 243
AfeI AGCGCT 1 cut(s) 11
AfiI CCNNNNNNNGG 3 cut(s) 181, 187, 287
AgsI TTSAA 1 cut(s) 233
AhdI GACNNNNNGTC 1 cut(s) 265
AjnI CCWGG 2 cut(s) 153, 180
AluBI AGCT 2 cut(s) 119, 202
AluI AGCT 2 cut(s) 119, 202
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 3 cut(s) 42, 47, 273
Aor51HI AGCGCT 1 cut(s) 11
ApeKI GCWGC 2 cut(s) 329, 332
ApoI RAATTY 1 cut(s) 145
AspLEI GCGC 1 cut(s) 12
AsuHPI GGTGA 5 cut(s) 103, 196, 323, 329, 335
AsuNHI GCTAGC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 2 cut(s) 316, 319
BccI CCATC 4 cut(s) 302, 308, 314, 392
BciT130I CCWGG 2 cut(s) 155, 182
BcoDI GTCTC 3 cut(s) 42, 47, 273
BfaI CTAG 3 cut(s) 116, 134, 257
BfoI RGCGCY 1 cut(s) 13
BisI GCNGC 2 cut(s) 330, 333
BlsI GCNGC 2 cut(s) 331, 334
Bme1390I CCNGG 2 cut(s) 155, 182
BmeRI GACNNNNNGTC 1 cut(s) 265
BmrFI CCNGG 2 cut(s) 155, 182
BmsI GCATC 1 cut(s) 316
BmtI GCTAGC 1 cut(s) 119
BpmI CTGGAG 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 402
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 187, 287
Bse1I ACTGG 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 402
BseBI CCWGG 2 cut(s) 155, 182
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 3 cut(s) 181, 187, 287
BseMII CTCAG 3 cut(s) 66, 111, 365
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 3 cut(s) 41, 44, 261
BseXI GCAGC 2 cut(s) 316, 319
Bsh1285I CGRYCG 1 cut(s) 281
BsiEI CGRYCG 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 19
BslI CCNNNNNNNGG 3 cut(s) 181, 187, 287
BsmAI GTCTC 3 cut(s) 42, 47, 273
BsmBI CGTCTC 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 19
Bsp1407I TGTACA 1 cut(s) 241
Bsp143I GATC 2 cut(s) 85, 403
BspCNI CTCAG 3 cut(s) 67, 112, 364
BspOI GCTAGC 1 cut(s) 119
BsrGI TGTACA 1 cut(s) 241
BsrI ACTGG 1 cut(s) 56
BssMI GATC 2 cut(s) 85, 403
Bst2UI CCWGG 2 cut(s) 155, 182
BstAUI TGTACA 1 cut(s) 241
BstC8I GCNNGC 2 cut(s) 117, 289
BstDEI CTNAG 4 cut(s) 75, 120, 351, 359
BstENI CCTNNNNNAGG 1 cut(s) 179
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 2 cut(s) 88, 406
BstMAI GTCTC 3 cut(s) 42, 47, 273
BstMBI GATC 2 cut(s) 85, 403
BstMCI CGRYCG 1 cut(s) 281
BstMWI GCNNNNNNNGC 2 cut(s) 116, 293
BstNI CCWGG 2 cut(s) 155, 182
BstSCI CCNGG 2 cut(s) 153, 180
BstV1I GCAGC 2 cut(s) 316, 319
BtsI GCAGTG 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 110
Cac8I GCNNGC 2 cut(s) 117, 289
CfoI GCGC 1 cut(s) 12
CseI GACGC 1 cut(s) 103
CsiI ACCWGGT 2 cut(s) 153, 180
Csp6I GTAC 2 cut(s) 193, 242
CviJI RGCY 4 cut(s) 55, 119, 202, 378
CviKI_1 RGCY 4 cut(s) 55, 119, 202, 378
CviQI GTAC 2 cut(s) 193, 242
DdeI CTNAG 4 cut(s) 75, 120, 351, 359
DpnI GATC 2 cut(s) 87, 405
DpnII GATC 2 cut(s) 85, 403
DriI GACNNNNNGTC 1 cut(s) 265
Eam1105I GACNNNNNGTC 1 cut(s) 265
Eco47III AGCGCT 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 83
EcoNI CCTNNNNNAGG 1 cut(s) 179
EcoRII CCWGG 2 cut(s) 153, 180
Esp3I CGTCTC 1 cut(s) 273
FaiI YATR 1 cut(s) 151
Fnu4HI GCNGC 2 cut(s) 330, 333
Fsp4HI GCNGC 2 cut(s) 330, 333
FspBI CTAG 3 cut(s) 116, 134, 257
GlaI GCGC 1 cut(s) 11
GluI GCNGC 2 cut(s) 330, 333
GsuI CTGGAG 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 13
HgaI GACGC 1 cut(s) 103
HhaI GCGC 1 cut(s) 12
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HinfI GANTC 1 cut(s) 34
HphI GGTGA 5 cut(s) 103, 196, 323, 329, 335
Hpy188I TCNGA 2 cut(s) 47, 76
Hpy188III TCNNGA 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 293
HpyF3I CTNAG 4 cut(s) 75, 120, 351, 359
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 2 cut(s) 85, 403
Lsp1109I GCAGC 2 cut(s) 316, 319
LweI GCATC 1 cut(s) 316
MabI ACCWGGT 2 cut(s) 153, 180
MaeI CTAG 3 cut(s) 116, 134, 257
MaeIII GTNAC 1 cut(s) 91
MalI GATC 2 cut(s) 87, 405
MboI GATC 2 cut(s) 85, 403
MboII GAAGA 2 cut(s) 92, 317
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 1 cut(s) 145
MmeI TCCRAC 1 cut(s) 84
MspR9I CCNGG 2 cut(s) 155, 182
MvaI CCWGG 2 cut(s) 155, 182
MwoI GCNNNNNNNGC 2 cut(s) 116, 293
NdeII GATC 2 cut(s) 85, 403
NheI GCTAGC 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 43
PfeI GAWTC 1 cut(s) 34
PflMI CCANNNNNTGG 1 cut(s) 187
PkrI GCNGC 2 cut(s) 331, 334
Psp6I CCWGG 2 cut(s) 153, 180
PspGI CCWGG 2 cut(s) 153, 180
PsrI GAACNNNNNNTAC 2 cut(s) 225, 257
RsaI GTAC 2 cut(s) 194, 243
RsaNI GTAC 2 cut(s) 193, 242
SatI GCNGC 2 cut(s) 330, 333
Sau3AI GATC 2 cut(s) 85, 403
ScrFI CCNGG 2 cut(s) 155, 182
SduI GDGCHC 1 cut(s) 19
SetI ASST 9 cut(s) 74, 121, 128, 156, 186, 204, 209, 219, 348
SexAI ACCWGGT 2 cut(s) 153, 180
SfaNI GCATC 1 cut(s) 316
Sse9I AATT 1 cut(s) 145
SspMI CTAG 3 cut(s) 116, 134, 257
StyD4I CCNGG 2 cut(s) 153, 180
TaqI TCGA 1 cut(s) 37
TaqII GACCGA 1 cut(s) 295
TasI AATT 1 cut(s) 145
TatI WGTACW 1 cut(s) 241
TfiI GAWTC 1 cut(s) 34
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 2 cut(s) 329, 332
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 3 cut(s) 138, 156, 216
TspRI CASTG 1 cut(s) 117
Van91I CCANNNNNTGG 1 cut(s) 187
XagI CCTNNNNNAGG 1 cut(s) 179
XapI RAATTY 1 cut(s) 145
XspI CTAG 3 cut(s) 116, 134, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.