pycom11g25280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0012509
Physical Location & Seq
Forward (+)
28092141 .. 28093763
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g25280.3

Sequence Viewer

Length: 1065 bp
ATGGCAGCTTCAGTGGACACGCCATCCCCTGCCCACCTCAGCAAGCAGTCACTCGTGGCTTCTTCTTCTCCGGTTTTCAGCCCCTCCTCCGACAAGCGCTTCTGGAGCTCTCTCCGCAGCCGGATCGATGCGCTTCTCGACGATCGAAACTCCAAAATCCCAATTGCTCAGAACCCACCAAATGCCGAACCGTCTCTGCCAATTCAAACGGAAAATAATGGCGGAGAAACAAAACCTGCGAGAGCGAGGAAGGAGGACTCGTTGCTTTTGATGAGAGGGTTCGATTCCATAGCTTACACTTTGTCTCAGCTCTCCAACACTCTGGATAATGCTCTTCAGGGAGCCAACGATCTAGCTAAGCCACCCACGTTGGCAGAGATATTCCATAGCCATCTGAGCAACTCGGAGGCGAAGAGTAAAGAGAAGGAATCGGAAGAAAAGCAGAGTGCAGAAGATTCCCATGTAGGATTGAAGAGGAAATTCGACGATAGTCATTGCTCAGAGGAACAAGGAGATGAATCCAAGAAAGATAATGAGCTCGAAGGCCCGAAAGACGGGAAGCTGAAGAAAGCAAAAAATCTTGCAATTTCAATGGCAACAAAAGCAGCTTCGTTTGCCCGGGAACTCAAGTCGATAAGATCGGATTTATGCTTTATGCAAGAACGCTGTGCTCTGCTGGAGGAGGAGAATCGGAGGCTCCGAGACGGGATGGATAAAGGGTTGAGGCCTGAGGAAGATGATCTGGTGAGGCTTCAGTTGGAGGCACTGCTATATGAGAAGTCAAGACTAGCAAATGAAAATTCAAACCTGGTTAGGGAAAATCAATGCCTCCACCAGCTTGTGGAGTATCACCAGCTTACCTCCCAAGATCTCTCTGCTTCATATGAACAAGTTGTACAAGGGTTGTGCCTAGACTTCTCGTCTCCTCCACGACCGACAGCAGACGAGGCAACTGGTGAAGATGGTGATGCTGCTGCTGATAATGAAGTTTCTCAGACACCAAGAAGTAATCTTTTTGGCTTCTCTGCCTCGCTTGATGATGAGTGTTCTAGTGGGGATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

39.01

Weight (kDa)

4.93

Isoelectric Point (pI)

53.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012509)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02800
fragaria_vesca FvH4_2g23580 FvH4_2g23580
malus_domestica MD03G1265000.v1.1 MD11G1285200.v1.1
prunus_persica Prupe.8G241100_v2.0.a1
pyrus_communis pycom03g21210 pycom11g25280 pycom11g25340
rosa_chinensis RchiOBHm_Chr6g0291051
rosa_laevigata RLG00000012151
rosa_multiflora Rmu_sc0004642.1_g000003
rosa_roxburghii Rroxscaffold_7G00176420
rosa_rugosa Rorug06G0217200
rosa_samantha Rh6AG327300 Rh6BG334800 Rh6CG341000 Rh6DG328300
rosa_wichuraiana Rw6G028470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 244
AccB7I CCANNNNNTGG 1 cut(s) 841
AciI CCGC 2 cut(s) 115, 222
AclWI GGATC 1 cut(s) 131
AcsI RAATTY 2 cut(s) 479, 799
AcuI CTGAAG 3 cut(s) 320, 584, 737
AfaI GTAC 1 cut(s) 897
AfeI AGCGCT 1 cut(s) 98
AfiI CCNNNNNNNGG 3 cut(s) 554, 814, 841
AgsI TTSAA 4 cut(s) 206, 472, 591, 804
AhdI GACNNNNNGTC 1 cut(s) 919
AjnI CCWGG 1 cut(s) 807
Alw21I GWGCWC 3 cut(s) 110, 540, 673
Alw26I GTCTC 4 cut(s) 198, 309, 696, 927
AlwI GGATC 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 618
Aor51HI AGCGCT 1 cut(s) 98
AoxI GGCC 2 cut(s) 544, 725
ApeKI GCWGC 5 cut(s) 5, 117, 605, 971, 974
ApoI RAATTY 2 cut(s) 479, 799
AspLEI GCGC 2 cut(s) 99, 133
AspS9I GGNCC 1 cut(s) 545
AsuC2I CCSGG 2 cut(s) 619, 620
AsuHPI GGTGA 4 cut(s) 757, 842, 968, 977
AvaI CYCGRG 1 cut(s) 618
AxyI CCTNAGG 1 cut(s) 729
BanII GRGCYC 2 cut(s) 110, 540
BauI CACGAG 1 cut(s) 53
Bbv12I GWGCWC 3 cut(s) 110, 540, 673
BbvCI CCTCAGC 1 cut(s) 38
BbvI GCAGC 5 cut(s) 17, 129, 617, 958, 961
BccI CCATC 4 cut(s) 31, 399, 703, 956
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 1 cut(s) 809
BcnI CCSGG 2 cut(s) 619, 620
BcoDI GTCTC 4 cut(s) 198, 309, 696, 927
BfaI CTAG 4 cut(s) 353, 788, 911, 1050
BfoI RGCGCY 1 cut(s) 100
BfuAI ACCTGC 1 cut(s) 244
BglII AGATCT 1 cut(s) 868
BisI GCNGC 5 cut(s) 6, 118, 606, 972, 975
BlpI GCTNAGC 1 cut(s) 357
BlsI GCNGC 5 cut(s) 7, 119, 607, 973, 976
Bme1390I CCNGG 3 cut(s) 619, 620, 809
BmeRI GACNNNNNGTC 1 cut(s) 919
BmeT110I CYCGRG 1 cut(s) 618
BmgT120I GGNCC 1 cut(s) 545
BmiI GGNNCC 2 cut(s) 343, 698
BmrFI CCNGG 3 cut(s) 619, 620, 809
BmsI GCATC 2 cut(s) 118, 958
BoxI GACNNNNGTC 1 cut(s) 489
BpmI CTGGAG 2 cut(s) 124, 698
Bpu10I CCTNAGC 1 cut(s) 38
Bpu1102I GCTNAGC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 611
BpuMI CCSGG 2 cut(s) 619, 620
Bsa29I ATCGAT 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 618
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 3 cut(s) 554, 814, 841
Bse1I ACTGG 1 cut(s) 958
Bse21I CCTNAGG 1 cut(s) 729
Bse3DI GCAATG 1 cut(s) 493
BseBI CCWGG 1 cut(s) 809
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 618
BseGI GGATG 2 cut(s) 23, 714
BseLI CCNNNNNNNGG 3 cut(s) 554, 814, 841
BseMI GCAATG 1 cut(s) 493
BseMII CTCAG 7 cut(s) 52, 182, 320, 386, 513, 720, 1007
BseNI ACTGG 1 cut(s) 958
BseRI GAGGAG 4 cut(s) 76, 695, 698, 915
BseXI GCAGC 5 cut(s) 17, 129, 617, 958, 961
BsgI GTGCAG 1 cut(s) 468
Bsh1285I CGRYCG 2 cut(s) 145, 935
BshFI GGCC 2 cut(s) 546, 727
BshVI ATCGAT 1 cut(s) 126
BsiEI CGRYCG 2 cut(s) 145, 935
BsiHKAI GWGCWC 3 cut(s) 110, 540, 673
BsiHKCI CYCGRG 1 cut(s) 618
BsiSI CCGG 3 cut(s) 71, 121, 619
BslI CCNNNNNNNGG 3 cut(s) 554, 814, 841
BsmAI GTCTC 4 cut(s) 198, 309, 696, 927
BsmBI CGTCTC 3 cut(s) 198, 696, 927
BsnI GGCC 2 cut(s) 546, 727
BsoBI CYCGRG 1 cut(s) 618
Bsp1286I GDGCHC 3 cut(s) 110, 540, 673
Bsp1407I TGTACA 1 cut(s) 895
Bsp143I GATC 7 cut(s) 123, 142, 349, 638, 739, 868, 1057
Bsp1720I GCTNAGC 1 cut(s) 357
BspACI CCGC 2 cut(s) 115, 222
BspANI GGCC 2 cut(s) 546, 727
BspCNI CTCAG 7 cut(s) 51, 181, 319, 387, 512, 721, 1006
BspDI ATCGAT 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 343, 698
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 1 cut(s) 131
BspQI GCTCTTC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 493
BsrGI TGTACA 1 cut(s) 895
BsrI ACTGG 1 cut(s) 958
BssECI CCNNGG 1 cut(s) 618
BssMI GATC 7 cut(s) 123, 142, 349, 638, 739, 868, 1057
BssSI CACGAG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 809
Bst4CI ACNGT 1 cut(s) 192
Bst6I CTCTTC 3 cut(s) 339, 407, 467
BstAUI TGTACA 1 cut(s) 895
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 8 cut(s) 38, 168, 306, 357, 395, 499, 729, 993
BstF5I GGATG 2 cut(s) 23, 714
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 2 cut(s) 99, 133
BstKTI GATC 7 cut(s) 126, 145, 352, 641, 742, 871, 1060
BstMAI GTCTC 4 cut(s) 198, 309, 696, 927
BstMBI GATC 7 cut(s) 123, 142, 349, 638, 739, 868, 1057
BstMCI CGRYCG 2 cut(s) 145, 935
BstMWI GCNNNNNNNGC 6 cut(s) 105, 114, 396, 602, 614, 947
BstNI CCWGG 1 cut(s) 809
BstPAI GACNNNNGTC 1 cut(s) 489
BstSCI CCNGG 3 cut(s) 617, 618, 807
BstV1I GCAGC 5 cut(s) 17, 129, 617, 958, 961
BstX2I RGATCY 1 cut(s) 868
BstXI CCANNNNNNTGG 1 cut(s) 322
BstYI RGATCY 1 cut(s) 868
Bsu15I ATCGAT 1 cut(s) 126
Bsu36I CCTNAGG 1 cut(s) 729
BsuRI GGCC 2 cut(s) 546, 727
BsuTUI ATCGAT 1 cut(s) 126
BtsCI GGATG 2 cut(s) 23, 714
BtsI GCAGTG 1 cut(s) 764
BtsIMutI CAGTG 2 cut(s) 18, 764
BveI ACCTGC 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 44
CfoI GCGC 2 cut(s) 99, 133
Cfr13I GGNCC 1 cut(s) 545
Cfr9I CCCGGG 1 cut(s) 618
ClaI ATCGAT 1 cut(s) 126
CsiI ACCWGGT 1 cut(s) 807
Csp6I GTAC 1 cut(s) 896
CspCI CAANNNNNGTGG 2 cut(s) 351, 386
CviAII CATG 1 cut(s) 461
CviQI GTAC 1 cut(s) 896
DdeI CTNAG 8 cut(s) 38, 168, 306, 357, 395, 499, 729, 993
DpnI GATC 7 cut(s) 125, 144, 351, 640, 741, 870, 1059
DpnII GATC 7 cut(s) 123, 142, 349, 638, 739, 868, 1057
DriI GACNNNNNGTC 1 cut(s) 919
Eam1104I CTCTTC 3 cut(s) 339, 407, 467
Eam1105I GACNNNNNGTC 1 cut(s) 919
EarI CTCTTC 3 cut(s) 339, 407, 467
EciI GGCGGA 1 cut(s) 237
Ecl136II GAGCTC 2 cut(s) 108, 538
Eco147I AGGCCT 1 cut(s) 727
Eco24I GRGCYC 2 cut(s) 110, 540
Eco47III AGCGCT 1 cut(s) 98
Eco53kI GAGCTC 2 cut(s) 108, 538
Eco57I CTGAAG 3 cut(s) 320, 584, 737
Eco81I CCTNAGG 1 cut(s) 729
Eco88I CYCGRG 1 cut(s) 618
EcoICRI GAGCTC 2 cut(s) 108, 538
EcoRII CCWGG 1 cut(s) 807
EcoT38I GRGCYC 2 cut(s) 110, 540
Esp3I CGTCTC 3 cut(s) 198, 696, 927
FaeI CATG 1 cut(s) 464
FaiI YATR 9 cut(s) 290, 387, 462, 649, 656, 772, 774, 883, 885
FatI CATG 1 cut(s) 460
FauNDI CATATG 1 cut(s) 883
Fnu4HI GCNGC 5 cut(s) 6, 118, 606, 972, 975
FokI GGATG 2 cut(s) 10, 721
FriOI GRGCYC 2 cut(s) 110, 540
Fsp4HI GCNGC 5 cut(s) 6, 118, 606, 972, 975
FspBI CTAG 4 cut(s) 353, 788, 911, 1050
GlaI GCGC 2 cut(s) 98, 132
GluI GCNGC 5 cut(s) 6, 118, 606, 972, 975
GsuI CTGGAG 2 cut(s) 124, 698
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 2 cut(s) 546, 727
HapII CCGG 3 cut(s) 71, 121, 619
HhaI GCGC 2 cut(s) 99, 133
Hin1II CATG 1 cut(s) 464
Hin6I GCGC 2 cut(s) 97, 131
HinP1I GCGC 2 cut(s) 97, 131
HinfI GANTC 6 cut(s) 257, 284, 428, 455, 518, 688
HpaII CCGG 3 cut(s) 71, 121, 619
HphI GGTGA 4 cut(s) 757, 842, 968, 977
Hpy166II GTNNAC 1 cut(s) 16
Hpy188III TCNNGA 4 cut(s) 103, 137, 323, 783
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 2 cut(s) 143, 488
HpyAV CCTTC 3 cut(s) 244, 418, 536
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4IV ACGT 1 cut(s) 368
HpyCH4V TGCA 3 cut(s) 449, 584, 658
HpyF10VI GCNNNNNNNGC 6 cut(s) 105, 114, 396, 602, 614, 947
HpyF3I CTNAG 8 cut(s) 38, 168, 306, 357, 395, 499, 729, 993
HpySE526I ACGT 1 cut(s) 368
Hsp92II CATG 1 cut(s) 464
HspAI GCGC 2 cut(s) 97, 131
Kzo9I GATC 7 cut(s) 123, 142, 349, 638, 739, 868, 1057
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 3 cut(s) 105, 341, 702
Lsp1109I GCAGC 5 cut(s) 17, 129, 617, 958, 961
LweI GCATC 2 cut(s) 118, 958
MabI ACCWGGT 1 cut(s) 807
MaeI CTAG 4 cut(s) 353, 788, 911, 1050
MaeII ACGT 1 cut(s) 368
MaeIII GTNAC 1 cut(s) 48
MalI GATC 7 cut(s) 125, 144, 351, 640, 741, 870, 1059
MboI GATC 7 cut(s) 123, 142, 349, 638, 739, 868, 1057
MfeI CAATTG 1 cut(s) 162
MflI RGATCY 1 cut(s) 868
MhlI GDGCHC 3 cut(s) 110, 540, 673
MluCI AATT 5 cut(s) 162, 201, 479, 585, 799
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 3 cut(s) 114, 339, 738
MseI TTAA 1 cut(s) 1063
MspI CCGG 3 cut(s) 71, 121, 619
MspR9I CCNGG 3 cut(s) 619, 620, 809
MunI CAATTG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 809
MwoI GCNNNNNNNGC 6 cut(s) 105, 114, 396, 602, 614, 947
NciI CCSGG 2 cut(s) 619, 620
NdeI CATATG 1 cut(s) 883
NdeII GATC 7 cut(s) 123, 142, 349, 638, 739, 868, 1057
NlaIII CATG 1 cut(s) 464
NlaIV GGNNCC 2 cut(s) 343, 698
NmuCI GTSAC 1 cut(s) 48
PceI AGGCCT 1 cut(s) 727
PciSI GCTCTTC 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 697
PfeI GAWTC 5 cut(s) 284, 428, 455, 518, 688
PflMI CCANNNNNTGG 1 cut(s) 841
PkrI GCNGC 5 cut(s) 7, 119, 607, 973, 976
Ple19I CGATCG 1 cut(s) 145
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PshAI GACNNNNGTC 1 cut(s) 489
Psp124BI GAGCTC 2 cut(s) 110, 540
Psp6I CCWGG 1 cut(s) 807
PspGI CCWGG 1 cut(s) 807
PspN4I GGNNCC 2 cut(s) 343, 698
PspPI GGNCC 1 cut(s) 545
PsrI GAACNNNNNNTAC 2 cut(s) 879, 911
PsuI RGATCY 1 cut(s) 868
PvuI CGATCG 1 cut(s) 145
RsaI GTAC 1 cut(s) 897
RsaNI GTAC 1 cut(s) 896
SacI GAGCTC 2 cut(s) 110, 540
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 1 cut(s) 1063
SatI GCNGC 5 cut(s) 6, 118, 606, 972, 975
Sau3AI GATC 7 cut(s) 123, 142, 349, 638, 739, 868, 1057
Sau96I GGNCC 1 cut(s) 545
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 3 cut(s) 619, 620, 809
SduI GDGCHC 3 cut(s) 110, 540, 673
SexAI ACCWGGT 1 cut(s) 807
SfaNI GCATC 2 cut(s) 118, 958
SmaI CCCGGG 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 626
SmoI CTYRAG 1 cut(s) 626
Sse9I AATT 5 cut(s) 162, 201, 479, 585, 799
SseBI AGGCCT 1 cut(s) 727
SsiI CCGC 2 cut(s) 115, 222
SspMI CTAG 4 cut(s) 353, 788, 911, 1050
SstI GAGCTC 2 cut(s) 110, 540
StuI AGGCCT 1 cut(s) 727
StyD4I CCNGG 3 cut(s) 617, 618, 807
TaaI ACNGT 1 cut(s) 192
TaiI ACGT 1 cut(s) 371
TaqI TCGA 7 cut(s) 126, 138, 145, 282, 483, 540, 632
TaqII GACCGA 1 cut(s) 949
TasI AATT 5 cut(s) 162, 201, 479, 585, 799
TatI WGTACW 1 cut(s) 895
TfiI GAWTC 5 cut(s) 284, 428, 455, 518, 688
Tru1I TTAA 1 cut(s) 1063
Tru9I TTAA 1 cut(s) 1063
TscAI CASTG 2 cut(s) 18, 771
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 5 cut(s) 5, 117, 605, 971, 974
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 5 cut(s) 531, 810, 870, 900, 999
TspGWI ACGGA 1 cut(s) 224
TspMI CCCGGG 1 cut(s) 618
TspRI CASTG 2 cut(s) 18, 771
Van91I CCANNNNNTGG 1 cut(s) 841
XapI RAATTY 2 cut(s) 479, 799
XmaI CCCGGG 1 cut(s) 618
XspI CTAG 4 cut(s) 353, 788, 911, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.