Rh6DG328300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0012509
Physical Location & Seq
Forward (+)
53299611 .. 53301586
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG328300.1

Sequence Viewer

Length: 789 bp
ATGGCTGCTTCAGTCGACACTCCATCACCGGTTCAACTCAACAAGGACTCCTCCATCTTCTTCACTGCTTCCGCTTCTTCTCCTCTCTTCACTCCCTCCTCCGATAAGCGCTTCTGGAGCTCTCTACAGACCCGAATCGATTCCATTCTCCAAGACCGCAACTCCAGAATCCCAATGGCTCAAAACCCACCAAATCCTGATCCTTCTCTACATATGAATGTTGGAGAAGCGAAACGCGGGAGAGGATTGAAGGAAGACTCGATGCTTTTGATGAGAGGGTTTGATTCGATTGCTCACACTCTGTCTCAGCTGTCTGACACTTTAGACAATGCTCTTCAGGGAGCTAATGATCTAGCTAAGCCACCCACATTGACAGAGATATTCCACAGCCAATTGAGCAACTCAGAGAGCAAAGAGGAGGGCTCAGAAGAACAACAACAACAGAAGGCAGAAGAGTCTCATGTAGGATTGAAGAGGAAGTACGACAACAGTCATTGCTTGGAGGAACAAGGGGATGGTGATGATTCACACCATGAAAATGAGCAAGGCCCAAAAGATGGGAAGCTGAAGAAAGCCAAAAATCTGGCGATTTCTATGGCAACGAAGGCGGCTTCATTTGCTAGGGAACTCAAGTTGATTAGGTCGGATTTATCGTTTATGCAAGAGCGGTGTGTTTTGCTGGAGGAGGAGAATAGGAGGCTCAGAGATGGATTTGACAAGGGGTTGAGGCCTGAGGAAGATGATTTGGTAAGATTCATGTTCTTCGATTTTTCCTATTTATGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

29.48

Weight (kDa)

5.26

Isoelectric Point (pI)

57.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012509)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02800
fragaria_vesca FvH4_2g23580 FvH4_2g23580
malus_domestica MD03G1265000.v1.1 MD11G1285200.v1.1
prunus_persica Prupe.8G241100_v2.0.a1
pyrus_communis pycom03g21210 pycom11g25280 pycom11g25340
rosa_chinensis RchiOBHm_Chr6g0291051
rosa_laevigata RLG00000012151
rosa_multiflora Rmu_sc0004642.1_g000003
rosa_roxburghii Rroxscaffold_7G00176420
rosa_rugosa Rorug06G0217200
rosa_samantha Rh6AG327300 Rh6BG334800 Rh6CG341000 Rh6DG328300
rosa_wichuraiana Rw6G028470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 557
AccBSI CCGCTC 1 cut(s) 667
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 237
AciI CCGC 5 cut(s) 72, 157, 237, 608, 667
AclWI GGATC 1 cut(s) 194
AcuI CTGAAG 2 cut(s) 320, 587
AfaI GTAC 1 cut(s) 482
AfeI AGCGCT 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 557
AgeI ACCGGT 1 cut(s) 28
AgsI TTSAA 3 cut(s) 35, 250, 472
AluBI AGCT 5 cut(s) 120, 310, 344, 356, 565
AluI AGCT 5 cut(s) 120, 310, 344, 356, 565
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 2 cut(s) 309, 462
AlwI GGATC 1 cut(s) 194
Aor51HI AGCGCT 1 cut(s) 110
AoxI GGCC 2 cut(s) 547, 728
ApeKI GCWGC 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 28
Asp700I GAANNNNTTC 1 cut(s) 139
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 548
AsuHPI GGTGA 2 cut(s) 18, 530
AxyI CCTNAGG 1 cut(s) 732
BanII GRGCYC 2 cut(s) 122, 425
BarI GAAGNNNNNNTAC 2 cut(s) 464, 496
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 122
BccI CCATC 5 cut(s) 31, 62, 509, 551, 701
BcoDI GTCTC 2 cut(s) 309, 462
BfaI CTAG 2 cut(s) 353, 621
BfmI CTRYAG 1 cut(s) 125
BfoI RGCGCY 1 cut(s) 112
BisI GCNGC 2 cut(s) 6, 609
BlpI GCTNAGC 1 cut(s) 357
BlsI GCNGC 2 cut(s) 7, 610
BmgT120I GGNCC 1 cut(s) 548
BmsI GCATC 1 cut(s) 252
BoxI GACNNNNGTC 1 cut(s) 489
BpiI GAAGAC 1 cut(s) 261
BplI GAGNNNNNCTC 2 cut(s) 407, 439
BpmI CTGGAG 3 cut(s) 136, 148, 701
Bpu1102I GCTNAGC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 614
Bsa29I ATCGAT 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 28
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 146, 176
Bsc4I CCNNNNNNNGG 1 cut(s) 557
Bse118I RCCGGY 1 cut(s) 28
Bse21I CCTNAGG 1 cut(s) 732
Bse3DI GCAATG 1 cut(s) 493
BseCI ATCGAT 1 cut(s) 138
BseGI GGATG 1 cut(s) 520
BseLI CCNNNNNNNGG 1 cut(s) 557
BseMI GCAATG 1 cut(s) 493
BseMII CTCAG 5 cut(s) 320, 417, 438, 715, 723
BseRI GAGGAG 6 cut(s) 40, 72, 88, 431, 698, 701
Bsh1236I CGCG 1 cut(s) 237
BshFI GGCC 2 cut(s) 549, 730
BshTI ACCGGT 1 cut(s) 28
BshVI ATCGAT 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 122
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 557
BsmAI GTCTC 2 cut(s) 309, 462
BsnI GGCC 2 cut(s) 549, 730
Bsp1286I GDGCHC 2 cut(s) 122, 425
Bsp143I GATC 2 cut(s) 199, 349
Bsp1720I GCTNAGC 1 cut(s) 357
BspACI CCGC 5 cut(s) 72, 157, 237, 608, 667
BspANI GGCC 2 cut(s) 549, 730
BspCNI CTCAG 5 cut(s) 319, 416, 437, 714, 724
BspDI ATCGAT 1 cut(s) 138
BspFNI CGCG 1 cut(s) 237
BspPI GGATC 1 cut(s) 194
BspQI GCTCTTC 1 cut(s) 339
BsrBI CCGCTC 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 493
BsrFI RCCGGY 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 28
BssMI GATC 2 cut(s) 199, 349
Bst4CI ACNGT 1 cut(s) 491
Bst6I CTCTTC 4 cut(s) 92, 339, 447, 467
BstDEI CTNAG 6 cut(s) 306, 357, 403, 424, 701, 732
BstF5I GGATG 1 cut(s) 520
BstFNI CGCG 1 cut(s) 237
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 2 cut(s) 202, 352
BstMAI GTCTC 2 cut(s) 309, 462
BstMBI GATC 2 cut(s) 199, 349
BstMWI GCNNNNNNNGC 4 cut(s) 117, 396, 605, 617
BstPAI GACNNNNGTC 1 cut(s) 489
BstSFI CTRYAG 1 cut(s) 125
BstUI CGCG 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 261
BstXI CCANNNNNNTGG 1 cut(s) 583
Bsu15I ATCGAT 1 cut(s) 138
Bsu36I CCTNAGG 1 cut(s) 732
BsuRI GGCC 2 cut(s) 549, 730
BsuTUI ATCGAT 1 cut(s) 138
BtsCI GGATG 1 cut(s) 520
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
CfoI GCGC 1 cut(s) 111
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 548
ClaI ATCGAT 1 cut(s) 138
Csp6I GTAC 1 cut(s) 481
CspAI ACCGGT 1 cut(s) 28
CspCI CAANNNNNGTGG 2 cut(s) 351, 386
CviAII CATG 3 cut(s) 461, 533, 757
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 6 cut(s) 306, 357, 403, 424, 701, 732
DpnI GATC 2 cut(s) 201, 351
DpnII GATC 2 cut(s) 199, 349
Eam1104I CTCTTC 4 cut(s) 92, 339, 447, 467
EarI CTCTTC 4 cut(s) 92, 339, 447, 467
Ecl136II GAGCTC 1 cut(s) 120
Eco147I AGGCCT 1 cut(s) 730
Eco24I GRGCYC 2 cut(s) 122, 425
Eco47III AGCGCT 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 120
Eco57I CTGAAG 2 cut(s) 320, 587
Eco81I CCTNAGG 1 cut(s) 732
EcoICRI GAGCTC 1 cut(s) 120
EcoT38I GRGCYC 2 cut(s) 122, 425
FaeI CATG 3 cut(s) 464, 536, 760
FaiI YATR 8 cut(s) 213, 215, 462, 534, 596, 659, 758, 781
FatI CATG 3 cut(s) 460, 532, 756
FauI CCCGC 1 cut(s) 230
FauNDI CATATG 1 cut(s) 213
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 6, 609
FokI GGATG 1 cut(s) 527
FriOI GRGCYC 2 cut(s) 122, 425
Fsp4HI GCNGC 2 cut(s) 6, 609
FspBI CTAG 2 cut(s) 353, 621
GlaI GCGC 1 cut(s) 110
GluI GCNGC 2 cut(s) 6, 609
GsuI CTGGAG 3 cut(s) 136, 148, 701
HaeII RGCGCY 1 cut(s) 112
HaeIII GGCC 2 cut(s) 549, 730
HapII CCGG 1 cut(s) 29
HhaI GCGC 1 cut(s) 111
Hin1II CATG 3 cut(s) 464, 536, 760
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 9 cut(s) 47, 135, 140, 168, 257, 284, 455, 524, 753
HpaII CCGG 1 cut(s) 29
HphI GGTGA 2 cut(s) 18, 530
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 7 cut(s) 103, 316, 406, 427, 646, 704, 788
Hpy188III TCNNGA 3 cut(s) 115, 165, 197
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 4 cut(s) 213, 244, 439, 598
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4V TGCA 1 cut(s) 661
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 396, 605, 617
HpyF3I CTNAG 6 cut(s) 306, 357, 403, 424, 701, 732
Hsp92II CATG 3 cut(s) 464, 536, 760
HspAI GCGC 1 cut(s) 109
Kzo9I GATC 2 cut(s) 199, 349
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 2 cut(s) 117, 341
LpnPI CCDG 8 cut(s) 42, 100, 178, 210, 323, 569, 665, 744
LweI GCATC 1 cut(s) 252
MaeI CTAG 2 cut(s) 353, 621
MalI GATC 2 cut(s) 201, 351
MbiI CCGCTC 1 cut(s) 667
MboI GATC 2 cut(s) 199, 349
MfeI CAATTG 1 cut(s) 392
MhlI GDGCHC 2 cut(s) 122, 425
MluCI AATT 1 cut(s) 392
MlyI GAGTC 3 cut(s) 41, 251, 464
MmeI TCCRAC 2 cut(s) 202, 624
MroXI GAANNNNTTC 1 cut(s) 139
MslI CAYNNNNRTG 2 cut(s) 216, 537
MspA1I CMGCKG 1 cut(s) 310
MspI CCGG 1 cut(s) 29
MunI CAATTG 1 cut(s) 392
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 4 cut(s) 117, 396, 605, 617
NdeI CATATG 1 cut(s) 213
NdeII GATC 2 cut(s) 199, 349
NlaIII CATG 3 cut(s) 464, 536, 760
PceI AGGCCT 1 cut(s) 730
PciSI GCTCTTC 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 650
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 6 cut(s) 135, 140, 168, 284, 524, 753
PflMI CCANNNNNTGG 1 cut(s) 557
PinAI ACCGGT 1 cut(s) 28
PkrI GCNGC 2 cut(s) 7, 610
PleI GAGTC 3 cut(s) 41, 251, 463
PpsI GAGTC 3 cut(s) 41, 251, 463
PshAI GACNNNNGTC 1 cut(s) 489
Psp124BI GAGCTC 1 cut(s) 122
PspPI GGNCC 1 cut(s) 548
PvuII CAGCTG 1 cut(s) 310
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 2 cut(s) 216, 537
SacI GAGCTC 1 cut(s) 122
SalI GTCGAC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 339
SatI GCNGC 2 cut(s) 6, 609
Sau3AI GATC 2 cut(s) 199, 349
Sau96I GGNCC 1 cut(s) 548
SchI GAGTC 3 cut(s) 41, 251, 464
SduI GDGCHC 2 cut(s) 122, 425
SetI ASST 6 cut(s) 122, 312, 346, 358, 567, 644
SfaNI GCATC 1 cut(s) 252
SfcI CTRYAG 1 cut(s) 125
SmiMI CAYNNNNRTG 2 cut(s) 216, 537
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 1 cut(s) 392
SseBI AGGCCT 1 cut(s) 730
SsiI CCGC 5 cut(s) 72, 157, 237, 608, 667
SspMI CTAG 2 cut(s) 353, 621
SstI GAGCTC 1 cut(s) 122
StuI AGGCCT 1 cut(s) 730
TaaI ACNGT 1 cut(s) 491
TaqI TCGA 5 cut(s) 15, 138, 260, 287, 765
TasI AATT 1 cut(s) 392
TauI GCSGC 1 cut(s) 611
TfiI GAWTC 6 cut(s) 135, 140, 168, 284, 524, 753
TscAI CASTG 1 cut(s) 70
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 4 cut(s) 230, 549, 603, 745
TspRI CASTG 1 cut(s) 70
Van91I CCANNNNNTGG 1 cut(s) 557
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 139
XspI CTAG 2 cut(s) 353, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.