Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015021

Physical Location & Seq

Genomic Coordinates Reverse (-)

6368829 .. 6369950

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAAGATACAATGTGAAGTGTGTGAAAAGGCTGAAGCAGAAGTACTTTGTTGTTCAGATGAAGCTGTACTATGCAAGCCATGTGACATTAAGGTTCATGAAGCTAATAAACTTTTCCAAAGACATCACCGAGTCGCCTTACAAAAAGATGCAGCCTCAGCCACCACAGCTTCTGGAGCTCCTCTATGTGATATCTGCCAGGAGAGAAAAGGGTACTTCTTCTGCTTAGAGGATAGAGCAATGCTGTGCAATGATTGTGATGAAGCCATTCACACTTGCAATTCTCACCAAAGATTCTTACTTTCTGGAGTACAAGTTTCTGATCAGTCTTTGACTGAAAACTCCGAATGCAGCACTAGTTTTAGCTCTGAAACTTACCAGATTCAGTCAAAAGTGTCTCTGAATAGTCAGTACTCTAGTGAGGAAACTGAAGCTGGAAACTCAGGTGAGATAGTACACAAGAATCCTTCTGTAATCTTAAGTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000989 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

162

Amino Acids

17.86

Weight (kDa)

4.98

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	61 - 98	1.4e-07	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10240
fragaria_vesca	FvH4_3g17750
malus_domestica	MD03G1247700.v1.1 MD11G1269800.v1.1
prunus_persica	Prupe.4G156600_v2.0.a1
pyrus_communis	pycom03g19640 pycom11g23830
rosa_chinensis	RchiOBHm_Chr5g0029541
rosa_laevigata	RLG00000033177
rosa_multiflora	Rmu_sc0000210.1_g000014
rosa_roxburghii	Rroxscaffold_1G00050400
rosa_samantha	Rh5AG206900 Rh5BG205600 Rh5CG227700 Rh5DG209300
rosa_wichuraiana	Rw5G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	54, 450
AfaI	GTAC	6 cut(s)	45, 69, 215, 312, 413, 456
AflII	CTTAAG	1 cut(s)	478
AhlI	ACTAGT	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	6 cut(s)	65, 104, 170, 179, 366, 434
AluI	AGCT	6 cut(s)	65, 104, 170, 179, 366, 434
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	402
AlwNI	CAGNNNCTG	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	152, 351
Asp700I	GAANNNNTTC	1 cut(s)	267
AsuHPI	GGTGA	3 cut(s)	119, 278, 458
BanII	GRGCYC	1 cut(s)	181
BarI	GAAGNNNNNNTAC	2 cut(s)	27, 59
Bbv12I	GWGCWC	1 cut(s)	181
BbvCI	CCTCAGC	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	164, 363
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	402
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	2 cut(s)	357, 417
BfrI	CTTAAG	1 cut(s)	478
BisI	GCNGC	2 cut(s)	153, 352
BlsI	GCNGC	2 cut(s)	154, 353
BmcAI	AGTACT	2 cut(s)	45, 413
Bme1390I	CCNGG	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	139
BpmI	CTGGAG	2 cut(s)	195, 327
Bpu10I	CCTNAGC	1 cut(s)	157
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bse3DI	GCAATG	2 cut(s)	246, 256
BseBI	CCWGG	1 cut(s)	200
BseMI	GCAATG	2 cut(s)	246, 256
BseMII	CTCAG	2 cut(s)	171, 456
BseRI	GAGGAG	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	164, 363
BsiHKAI	GWGCWC	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	402
BsmI	GAATGC	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	322
BspCNI	CTCAG	2 cut(s)	170, 455
BspHI	TCATGA	1 cut(s)	97
BspTI	CTTAAG	1 cut(s)	478
BsrDI	GCAATG	2 cut(s)	246, 256
BssMI	GATC	1 cut(s)	322
Bst2UI	CCWGG	1 cut(s)	200
BstAFI	CTTAAG	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	4 cut(s)	157, 226, 442, 486
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 167, 176
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	164, 363
Cac8I	GCNNGC	1 cut(s)	77
CaiI	CAGNNNCTG	1 cut(s)	173
CciI	TCATGA	1 cut(s)	97
Csp6I	GTAC	6 cut(s)	44, 68, 214, 311, 412, 455
CviAII	CATG	2 cut(s)	81, 98
CviQI	GTAC	6 cut(s)	44, 68, 214, 311, 412, 455
DdeI	CTNAG	4 cut(s)	157, 226, 442, 486
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
Ecl136II	GAGCTC	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	181
Eco32I	GATATC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	179
Eco57I	CTGAAG	2 cut(s)	54, 450
EcoICRI	GAGCTC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	198
EcoRV	GATATC	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	181
FaeI	CATG	2 cut(s)	84, 101
FaiI	YATR	4 cut(s)	73, 82, 99, 187
FatI	CATG	2 cut(s)	80, 97
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	153, 352
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	2 cut(s)	153, 352
FspBI	CTAG	2 cut(s)	357, 417
GluI	GCNGC	2 cut(s)	153, 352
GsuI	CTGGAG	2 cut(s)	195, 327
Hin1II	CATG	2 cut(s)	84, 101
HinfI	GANTC	4 cut(s)	132, 294, 382, 463
HphI	GGTGA	3 cut(s)	119, 278, 458
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	5 cut(s)	58, 322, 346, 370, 402
Hpy188III	TCNNGA	3 cut(s)	98, 174, 306
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	1 cut(s)	477
HpyCH4V	TGCA	5 cut(s)	75, 152, 249, 279, 351
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 167, 176
HpyF3I	CTNAG	4 cut(s)	157, 226, 442, 486
Hsp92II	CATG	2 cut(s)	84, 101
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	322
LmnI	GCTCC	2 cut(s)	176, 184
LpnPI	CCDG	7 cut(s)	159, 185, 212, 291, 392, 420, 429
Lsp1109I	GCAGC	2 cut(s)	164, 363
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	2 cut(s)	357, 417
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	2 cut(s)	16, 211
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	1 cut(s)	280
MlyI	GAGTC	1 cut(s)	141
MnlI	CCTC	4 cut(s)	166, 192, 223, 415
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	2 cut(s)	90, 479
MspCI	CTTAAG	1 cut(s)	478
MspR9I	CCNGG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	158, 167, 176
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	2 cut(s)	84, 101
NmuCI	GTSAC	1 cut(s)	83
PagI	TCATGA	1 cut(s)	97
PctI	GAATGC	1 cut(s)	353
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	3 cut(s)	294, 382, 463
PkrI	GCNGC	2 cut(s)	154, 353
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PstNI	CAGNNNCTG	1 cut(s)	173
RsaI	GTAC	6 cut(s)	45, 69, 215, 312, 413, 456
RsaNI	GTAC	6 cut(s)	44, 68, 214, 311, 412, 455
SacI	GAGCTC	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	90, 479
SatI	GCNGC	2 cut(s)	153, 352
Sau3AI	GATC	1 cut(s)	322
ScaI	AGTACT	2 cut(s)	45, 413
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	8 cut(s)	67, 96, 106, 172, 181, 368, 436, 448
SfaNI	GCATC	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
SpeI	ACTAGT	1 cut(s)	356
Sse9I	AATT	1 cut(s)	280
SspMI	CTAG	2 cut(s)	357, 417
SstI	GAGCTC	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	198
TasI	AATT	1 cut(s)	280
TatI	WGTACW	5 cut(s)	43, 67, 310, 411, 454
TfiI	GAWTC	3 cut(s)	294, 382, 463
Tru1I	TTAA	2 cut(s)	90, 479
Tru9I	TTAA	2 cut(s)	90, 479
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	2 cut(s)	152, 351
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	5 cut(s)	17, 75, 86, 114, 276
Vha464I	CTTAAG	1 cut(s)	478
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	2 cut(s)	357, 417
ZrmI	AGTACT	2 cut(s)	45, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.