RLG00000033177

salt tolerance-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015021
Physical Location & Seq
Forward (+)
24126681 .. 24128115
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033177

Sequence Viewer

Length: 522 bp
ATGAAGATACAGTGTAACGTGTGCGAGACGGCGGAGGCGAACGTGCTCTGCTGCGCCGACGAGGCGGCGCTCTGCTGGGCCTGCGACGAGAAGGTCCACGCAGCCAACAAGCTCGCCAGCAAGCACCAGAGGGTTCCTCTCTCCGCTTCCCACATGCCCAAGTGCGATATCTGCCAGGAGGCGGTTGGGTATTTTTTCTGTTTGGAGGATAGAGCTCTGCTGTGTAGGAACTGTGATGTTGCTGTACACACTGCGAATAGTTTTGTTTCCGGTCACCGGAGGTTTTTGCTGACCGGAATTAAAGTTGGGCCGGAGTCCAATCCACCTGGGTCTGCTGAGATCTCTTGGATGGTGCCAAAGGTACCTTCCCCGCCTACATCCTCGGGGCTATACTGGCCTAAAACTTATCAGAACCCATCGGAATCTGCAGTGTTTGTTCCAGACGTTTGCTATTCAGAAATGGAAAATCCTCTTCACTGTCAACAGAATGGTACTGTCTCAAAACGTCGTAGGCAATTCTAA

Protein Analysis

174

Amino Acids

19.13

Weight (kDa)

6.96

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 52 - 93 9.4e-08 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10240
fragaria_vesca FvH4_3g17750
malus_domestica MD03G1247700.v1.1 MD11G1269800.v1.1
prunus_persica Prupe.4G156600_v2.0.a1
pyrus_communis pycom03g19640 pycom11g23830
rosa_chinensis RchiOBHm_Chr5g0029541
rosa_laevigata RLG00000033177
rosa_multiflora Rmu_sc0000210.1_g000014
rosa_roxburghii Rroxscaffold_1G00050400
rosa_samantha Rh5AG206900 Rh5BG205600 Rh5CG227700 Rh5DG209300
rosa_wichuraiana Rw5G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
Acc65I GGTACC 1 cut(s) 361
AccB1I GGYRCC 2 cut(s) 352, 361
AciI CCGC 5 cut(s) 32, 65, 144, 182, 371
AfaI GTAC 3 cut(s) 246, 363, 493
AfiI CCNNNNNNNGG 2 cut(s) 181, 276
AflIII ACRYGT 1 cut(s) 18
AjnI CCWGG 2 cut(s) 174, 325
AjuI GAANNNNNNNTTGG 2 cut(s) 349, 381
AluBI AGCT 2 cut(s) 112, 215
AluI AGCT 2 cut(s) 112, 215
Alw21I GWGCWC 2 cut(s) 48, 217
Alw26I GTCTC 2 cut(s) 20, 502
Ama87I CYCGRG 1 cut(s) 382
AoxI GGCC 3 cut(s) 78, 308, 395
ApeKI GCWGC 2 cut(s) 51, 101
Asp718I GGTACC 1 cut(s) 361
AspLEI GCGC 2 cut(s) 56, 70
AspS9I GGNCC 3 cut(s) 78, 94, 308
AsuHPI GGTGA 1 cut(s) 266
AvaI CYCGRG 1 cut(s) 382
AvaII GGWCC 1 cut(s) 94
BanI GGYRCC 2 cut(s) 352, 361
BanII GRGCYC 1 cut(s) 217
Bbv12I GWGCWC 2 cut(s) 48, 217
BbvI GCAGC 2 cut(s) 38, 113
BccI CCATC 2 cut(s) 343, 424
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 2 cut(s) 176, 327
BcoDI GTCTC 2 cut(s) 20, 502
BfmI CTRYAG 1 cut(s) 426
BfoI RGCGCY 1 cut(s) 71
BglI GCCNNNNNGGC 1 cut(s) 62
BglII AGATCT 1 cut(s) 339
BisI GCNGC 3 cut(s) 52, 66, 102
BlsI GCNGC 3 cut(s) 53, 67, 103
Bme1390I CCNGG 2 cut(s) 176, 327
Bme18I GGWCC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 382
BmgT120I GGNCC 3 cut(s) 78, 94, 308
BmiI GGNNCC 3 cut(s) 135, 354, 363
BmrFI CCNGG 2 cut(s) 176, 327
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BsaJI CCNNGG 2 cut(s) 326, 381
BsaWI WCCGGW 3 cut(s) 269, 276, 293
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 276
Bse1I ACTGG 1 cut(s) 398
BseBI CCWGG 2 cut(s) 176, 327
BseDI CCNNGG 2 cut(s) 326, 381
BseGI GGATG 2 cut(s) 354, 377
BseLI CCNNNNNNNGG 2 cut(s) 181, 276
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 398
BseXI GCAGC 2 cut(s) 38, 113
BseYI CCCAGC 1 cut(s) 75
BshFI GGCC 3 cut(s) 80, 310, 397
BshNI GGYRCC 2 cut(s) 352, 361
BsiHKAI GWGCWC 2 cut(s) 48, 217
BsiHKCI CYCGRG 1 cut(s) 382
BsiSI CCGG 4 cut(s) 270, 277, 294, 311
BslI CCNNNNNNNGG 2 cut(s) 181, 276
BsmAI GTCTC 2 cut(s) 20, 502
BsmBI CGTCTC 1 cut(s) 20
BsnI GGCC 3 cut(s) 80, 310, 397
BsoBI CYCGRG 1 cut(s) 382
Bsp1286I GDGCHC 2 cut(s) 48, 217
Bsp1407I TGTACA 1 cut(s) 244
Bsp143I GATC 1 cut(s) 339
BspACI CCGC 5 cut(s) 32, 65, 144, 182, 371
BspANI GGCC 3 cut(s) 80, 310, 397
BspCNI CTCAG 1 cut(s) 328
BspLI GGNNCC 3 cut(s) 135, 354, 363
BspMAI CTGCAG 1 cut(s) 430
BspT107I GGYRCC 2 cut(s) 352, 361
BsrGI TGTACA 1 cut(s) 244
BsrI ACTGG 1 cut(s) 398
BssECI CCNNGG 2 cut(s) 326, 381
BssMI GATC 1 cut(s) 339
Bst2UI CCWGG 2 cut(s) 176, 327
Bst4CI ACNGT 4 cut(s) 12, 233, 479, 496
Bst6I CTCTTC 1 cut(s) 477
BstAUI TGTACA 1 cut(s) 244
BstC8I GCNNGC 4 cut(s) 82, 114, 118, 122
BstDEI CTNAG 1 cut(s) 336
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 2 cut(s) 354, 377
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 2 cut(s) 56, 70
BstKTI GATC 1 cut(s) 342
BstMAI GTCTC 2 cut(s) 20, 502
BstMBI GATC 1 cut(s) 339
BstMWI GCNNNNNNNGC 4 cut(s) 62, 81, 171, 394
BstNI CCWGG 2 cut(s) 176, 327
BstNSI RCATGY 1 cut(s) 157
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 2 cut(s) 174, 325
BstSFI CTRYAG 1 cut(s) 426
BstV1I GCAGC 2 cut(s) 38, 113
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BsuRI GGCC 3 cut(s) 80, 310, 397
BtsCI GGATG 2 cut(s) 354, 377
BtsI GCAGTG 2 cut(s) 249, 435
BtsIMutI CAGTG 4 cut(s) 17, 249, 435, 475
Cac8I GCNNGC 4 cut(s) 82, 114, 118, 122
CfoI GCGC 2 cut(s) 56, 70
Cfr13I GGNCC 3 cut(s) 78, 94, 308
Csp6I GTAC 3 cut(s) 245, 362, 492
CviAII CATG 1 cut(s) 154
CviJI RGCY 7 cut(s) 80, 104, 112, 215, 310, 388, 397
CviKI_1 RGCY 7 cut(s) 80, 104, 112, 215, 310, 388, 397
CviQI GTAC 3 cut(s) 245, 362, 492
DdeI CTNAG 1 cut(s) 336
DpnI GATC 1 cut(s) 341
DpnII GATC 1 cut(s) 339
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
EciI GGCGGA 1 cut(s) 47
Ecl136II GAGCTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 217
Eco32I GATATC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 94
Eco53kI GAGCTC 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 382
Eco91I GGTNACC 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 215
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 174, 325
EcoRV GATATC 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 217
Esp3I CGTCTC 1 cut(s) 20
FaeI CATG 1 cut(s) 157
FaiI YATR 2 cut(s) 155, 391
FatI CATG 1 cut(s) 153
FauI CCCGC 1 cut(s) 378
Fnu4HI GCNGC 3 cut(s) 52, 66, 102
FokI GGATG 2 cut(s) 361, 364
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 3 cut(s) 52, 66, 102
GlaI GCGC 2 cut(s) 55, 69
GluI GCNGC 3 cut(s) 52, 66, 102
GsaI CCCAGC 1 cut(s) 79
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 3 cut(s) 80, 310, 397
HapII CCGG 4 cut(s) 270, 277, 294, 311
HhaI GCGC 2 cut(s) 56, 70
Hin1II CATG 1 cut(s) 157
Hin6I GCGC 2 cut(s) 54, 68
HinP1I GCGC 2 cut(s) 54, 68
HincII GTYRAC 1 cut(s) 482
HindII GTYRAC 1 cut(s) 482
HinfI GANTC 2 cut(s) 314, 422
HpaII CCGG 4 cut(s) 270, 277, 294, 311
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 3 cut(s) 97, 247, 482
Hpy188I TCNGA 3 cut(s) 411, 421, 457
Hpy188III TCNNGA 1 cut(s) 440
Hpy8I GTNNAC 3 cut(s) 97, 247, 482
Hpy99I CGWCG 3 cut(s) 62, 89, 510
HpyAV CCTTC 2 cut(s) 85, 375
HpyCH4III ACNGT 4 cut(s) 12, 233, 479, 496
HpyCH4IV ACGT 4 cut(s) 18, 42, 444, 505
HpyCH4V TGCA 1 cut(s) 428
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 81, 171, 394
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 4 cut(s) 18, 42, 444, 505
Hsp92II CATG 1 cut(s) 157
HspAI GCGC 2 cut(s) 54, 68
KpnI GGTACC 1 cut(s) 365
Kzo9I GATC 1 cut(s) 339
Lsp1109I GCAGC 2 cut(s) 38, 113
MaeII ACGT 4 cut(s) 18, 42, 444, 505
MaeIII GTNAC 2 cut(s) 14, 272
MalI GATC 1 cut(s) 341
MboI GATC 1 cut(s) 339
MboII GAAGA 2 cut(s) 16, 464
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 2 cut(s) 48, 217
MluCI AATT 2 cut(s) 297, 515
MlyI GAGTC 1 cut(s) 323
MnlI CCTC 9 cut(s) 28, 55, 123, 147, 172, 199, 273, 391, 480
MseI TTAA 1 cut(s) 300
MspI CCGG 4 cut(s) 270, 277, 294, 311
MspR9I CCNGG 2 cut(s) 176, 327
MvaI CCWGG 2 cut(s) 176, 327
MwoI GCNNNNNNNGC 4 cut(s) 62, 81, 171, 394
NdeII GATC 1 cut(s) 339
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 3 cut(s) 135, 354, 363
NmuCI GTSAC 1 cut(s) 272
NspI RCATGY 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PfeI GAWTC 1 cut(s) 422
PkrI GCNGC 3 cut(s) 53, 67, 103
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
Psp124BI GAGCTC 1 cut(s) 217
Psp6I CCWGG 2 cut(s) 174, 325
PspEI GGTNACC 1 cut(s) 272
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 2 cut(s) 174, 325
PspN4I GGNNCC 3 cut(s) 135, 354, 363
PspPI GGNCC 3 cut(s) 78, 94, 308
PstI CTGCAG 1 cut(s) 430
PsuI RGATCY 1 cut(s) 339
RsaI GTAC 3 cut(s) 246, 363, 493
RsaNI GTAC 3 cut(s) 245, 362, 492
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 3 cut(s) 52, 66, 102
Sau3AI GATC 1 cut(s) 339
Sau96I GGNCC 3 cut(s) 78, 94, 308
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 2 cut(s) 176, 327
SduI GDGCHC 2 cut(s) 48, 217
SfcI CTRYAG 1 cut(s) 426
SinI GGWCC 1 cut(s) 94
Sse9I AATT 2 cut(s) 297, 515
SsiI CCGC 5 cut(s) 32, 65, 144, 182, 371
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 2 cut(s) 174, 325
TaaI ACNGT 4 cut(s) 12, 233, 479, 496
TaiI ACGT 4 cut(s) 21, 45, 447, 508
TasI AATT 2 cut(s) 297, 515
TatI WGTACW 1 cut(s) 244
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 4 cut(s) 17, 256, 435, 482
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 2 cut(s) 51, 101
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 4 cut(s) 17, 256, 435, 482
VpaK11BI GGWCC 1 cut(s) 94
XceI RCATGY 1 cut(s) 157
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.