Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0015021

Physical Location & Seq

Genomic Coordinates Reverse (-)

26840881 .. 26842370

Gene Structure 1490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g23830.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAAGATACAGTGCAACGTTTGCGAGGCGGCGGAGGCGAACGTCCTCTGCTGCGCCGACGAGGCGGCGCTGTGCTGGGCATGCGACGAGAAGGTTCACAAAGCGAACAAGCTCGCGAGCAAGCACCAGAGGGTTCCTCTGTGCTCCTCCCACATGCCCAAGTGCGATATCTGCCAGGAGGCAGTTGGGTACTTTTTCTGCTTAGAAGATCGAGCTTTGCTGTGTAGAAAATGTGATGTATCTGTTCACACGGCTAATAGCTTTGTGTCGGCTCACCGGAGGTTCTTGCTGACCGGAATCAAGGTTGGGCCGGAGCCAGCTGAGCCGGATTCCGGCGGAGTTAATGGGGTTTGTGTTGGGGCGTCTTCTACTGTGAAGTTGCATTCTGGGTCTGCCTCTGTGTCTAGATGTGAAACTCATAACCCGTTGCCGGTGGAGTGCAAGGCGGGCGCGCCGCCCGGTGGAGGGATATCGTTTAACGGGGGTTCTGCAGCTGGGAGTGTTCCACAATGTTATATAGATGAGTTTCTTGGATTCTCTGATCTTGATCAGAGCTTTGACTACATTGATAATGGATCTTCAAAGGCTGACTGCAGTAAACTTGGAGGGTATGACTCGCCAGTTTTAAGATCATCTGTGGAGGAATTGGAAGACTATGAGTGCATAGGTGAGGTGCCAGAGACCTCATGGATGGTGCCACAGGTACCTTCCCCGCCTACAGCATCGGGACTCTACTGGCCCAAAAGTTTTCAGAATCTGTCCGATTCTTCTACAACGTTTGTTCCAGACATATGCCACTCACAAATGCAAAACTCTCTTCGTTCCCAACATAATGGTACTATCTCAAAACGTCGTAGGCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000989 GO:0003674 GO:0008150 GO:0009889 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

289

Amino Acids

30.98

Weight (kDa)

5.58

Isoelectric Point (pI)

56.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10240
fragaria_vesca	FvH4_3g17750
malus_domestica	MD03G1247700.v1.1 MD11G1269800.v1.1
prunus_persica	Prupe.4G156600_v2.0.a1
pyrus_communis	pycom03g19640 pycom11g23830
rosa_chinensis	RchiOBHm_Chr5g0029541
rosa_laevigata	RLG00000033177
rosa_multiflora	Rmu_sc0000210.1_g000014
rosa_roxburghii	Rroxscaffold_1G00050400
rosa_samantha	Rh5AG206900 Rh5BG205600 Rh5CG227700 Rh5DG209300
rosa_wichuraiana	Rw5G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	703
AccB1I	GGYRCC	3 cut(s)	673, 694, 703
AccII	CGCG	2 cut(s)	116, 452
AciI	CCGC	7 cut(s)	29, 32, 65, 336, 446, 455, 713
AclI	AACGTT	2 cut(s)	18, 776
AclWI	GGATC	1 cut(s)	583
AcyI	GRCGYC	1 cut(s)	362
AfaI	GTAC	3 cut(s)	191, 705, 838
AfiI	CCNNNNNNNGG	5 cut(s)	332, 430, 461, 464, 465
AgsI	TTSAA	1 cut(s)	582
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	6 cut(s)	112, 215, 261, 320, 494, 555
AluI	AGCT	6 cut(s)	112, 215, 261, 320, 494, 555
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	674
AlwI	GGATC	1 cut(s)	583
AlwNI	CAGNNNCTG	1 cut(s)	757
AoxI	GGCC	2 cut(s)	308, 737
ApeKI	GCWGC	2 cut(s)	51, 491
AscI	GGCGCGCC	1 cut(s)	450
Asp718I	GGTACC	1 cut(s)	703
AspLEI	GCGC	4 cut(s)	56, 70, 452, 454
AspS9I	GGNCC	2 cut(s)	308, 738
AsuC2I	CCSGG	1 cut(s)	459
AsuHPI	GGTGA	2 cut(s)	266, 680
BanI	GGYRCC	3 cut(s)	673, 694, 703
BbsI	GAAGAC	2 cut(s)	357, 657
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	38, 503
BccI	CCATC	1 cut(s)	685
BceAI	ACGGC	1 cut(s)	267
BciT130I	CCWGG	1 cut(s)	176
BclI	TGATCA	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	674
BfaI	CTAG	2 cut(s)	405, 865
BfmI	CTRYAG	3 cut(s)	489, 592, 717
BfoI	RGCGCY	1 cut(s)	71
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	5 cut(s)	30, 52, 66, 455, 492
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	5 cut(s)	31, 53, 67, 456, 493
Bme1390I	CCNGG	2 cut(s)	176, 459
BmgT120I	GGNCC	2 cut(s)	308, 738
BmiI	GGNNCC	5 cut(s)	135, 315, 675, 696, 705
BmrFI	CCNGG	2 cut(s)	176, 459
BmsI	GCATC	1 cut(s)	731
BpiI	GAAGAC	2 cut(s)	357, 657
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
Bpu1102I	GCTNAGC	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	459
BsaBI	GATNNNNATC	1 cut(s)	546
BsaHI	GRCGYC	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	674
BsaWI	WCCGGW	2 cut(s)	276, 293
Bsc4I	CCNNNNNNNGG	5 cut(s)	332, 430, 461, 464, 465
Bse118I	RCCGGY	1 cut(s)	430
Bse1I	ACTGG	2 cut(s)	620, 740
Bse8I	GATNNNNATC	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	176
BseGI	GGATG	1 cut(s)	696
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	5 cut(s)	332, 430, 461, 464, 465
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	2 cut(s)	620, 740
BsePI	GCGCGC	1 cut(s)	450
BseRI	GAGGAG	1 cut(s)	136
BseXI	GCAGC	2 cut(s)	38, 503
BseYI	CCCAGC	2 cut(s)	75, 494
Bsh1236I	CGCG	2 cut(s)	116, 452
BshFI	GGCC	2 cut(s)	310, 739
BshNI	GGYRCC	3 cut(s)	673, 694, 703
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	7 cut(s)	277, 294, 311, 326, 333, 431, 459
BslFI	GGGAC	1 cut(s)	741
BslI	CCNNNNNNNGG	5 cut(s)	332, 430, 461, 464, 465
BsmAI	GTCTC	1 cut(s)	674
BsmFI	GGGAC	1 cut(s)	741
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	310, 739
Bso31I	GGTCTC	1 cut(s)	674
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	5 cut(s)	208, 541, 547, 575, 629
Bsp1720I	GCTNAGC	1 cut(s)	321
Bsp68I	TCGCGA	1 cut(s)	116
BspACI	CCGC	7 cut(s)	29, 32, 65, 336, 446, 455, 713
BspANI	GGCC	2 cut(s)	310, 739
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	2 cut(s)	116, 452
BspLI	GGNNCC	5 cut(s)	135, 315, 675, 696, 705
BspMAI	CTGCAG	2 cut(s)	493, 596
BspPI	GGATC	1 cut(s)	583
BspT107I	GGYRCC	3 cut(s)	673, 694, 703
BspTNI	GGTCTC	1 cut(s)	674
BsrFI	RCCGGY	1 cut(s)	430
BsrI	ACTGG	2 cut(s)	620, 740
BssAI	RCCGGY	1 cut(s)	430
BssHII	GCGCGC	1 cut(s)	450
BssMI	GATC	5 cut(s)	208, 541, 547, 575, 629
BssNI	GRCGYC	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	2 cut(s)	12, 373
Bst6I	CTCTTC	1 cut(s)	822
BstACI	GRCGYC	1 cut(s)	362
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	7 cut(s)	82, 114, 118, 122, 318, 448, 452
BstDEI	CTNAG	2 cut(s)	202, 321
BstF5I	GGATG	1 cut(s)	696
BstFNI	CGCG	2 cut(s)	116, 452
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	4 cut(s)	56, 70, 452, 454
BstKTI	GATC	5 cut(s)	211, 544, 550, 578, 632
BstMAI	GTCTC	1 cut(s)	674
BstMBI	GATC	5 cut(s)	208, 541, 547, 575, 629
BstMWI	GCNNNNNNNGC	7 cut(s)	21, 35, 62, 81, 171, 322, 447
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	2 cut(s)	84, 157
BstSCI	CCNGG	2 cut(s)	174, 457
BstSFI	CTRYAG	3 cut(s)	489, 592, 717
BstUI	CGCG	2 cut(s)	116, 452
BstV1I	GCAGC	2 cut(s)	38, 503
BstV2I	GAAGAC	2 cut(s)	357, 657
BstX2I	RGATCY	1 cut(s)	575
BstXI	CCANNNNNNTGG	1 cut(s)	833
BstYI	RGATCY	1 cut(s)	575
BsuRI	GGCC	2 cut(s)	310, 739
BtsCI	GGATG	1 cut(s)	696
BtsIMutI	CAGTG	1 cut(s)	17
BtuMI	TCGCGA	1 cut(s)	116
Cac8I	GCNNGC	7 cut(s)	82, 114, 118, 122, 318, 448, 452
CaiI	CAGNNNCTG	1 cut(s)	757
CfoI	GCGC	4 cut(s)	56, 70, 452, 454
Cfr10I	RCCGGY	1 cut(s)	430
Cfr13I	GGNCC	2 cut(s)	308, 738
CseI	GACGC	1 cut(s)	351
Csp6I	GTAC	3 cut(s)	190, 704, 837
CviAII	CATG	3 cut(s)	81, 154, 687
CviQI	GTAC	3 cut(s)	190, 704, 837
DdeI	CTNAG	2 cut(s)	202, 321
DpnI	GATC	5 cut(s)	210, 543, 549, 577, 631
DpnII	GATC	5 cut(s)	208, 541, 547, 575, 629
Eam1104I	CTCTTC	1 cut(s)	822
EarI	CTCTTC	1 cut(s)	822
EciI	GGCGGA	2 cut(s)	47, 351
Eco31I	GGTCTC	1 cut(s)	674
Eco32I	GATATC	2 cut(s)	169, 471
EcoRII	CCWGG	1 cut(s)	174
EcoRV	GATATC	2 cut(s)	169, 471
FaeI	CATG	3 cut(s)	84, 157, 690
FaqI	GGGAC	1 cut(s)	741
FatI	CATG	3 cut(s)	80, 153, 686
FauI	CCCGC	2 cut(s)	439, 720
FauNDI	CATATG	1 cut(s)	791
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	5 cut(s)	30, 52, 66, 455, 492
FokI	GGATG	1 cut(s)	703
Fsp4HI	GCNGC	5 cut(s)	30, 52, 66, 455, 492
FspBI	CTAG	2 cut(s)	405, 865
GlaI	GCGC	4 cut(s)	55, 69, 451, 453
GluI	GCNGC	5 cut(s)	30, 52, 66, 455, 492
GsaI	CCCAGC	2 cut(s)	79, 498
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	310, 739
HapII	CCGG	7 cut(s)	277, 294, 311, 326, 333, 431, 459
HgaI	GACGC	1 cut(s)	351
HhaI	GCGC	4 cut(s)	56, 70, 452, 454
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	3 cut(s)	84, 157, 690
Hin6I	GCGC	4 cut(s)	54, 68, 450, 452
HinP1I	GCGC	4 cut(s)	54, 68, 450, 452
HinfI	GANTC	7 cut(s)	297, 329, 534, 614, 729, 754, 764
HpaII	CCGG	7 cut(s)	277, 294, 311, 326, 333, 431, 459
HphI	GGTGA	2 cut(s)	266, 680
Hpy166II	GTNNAC	3 cut(s)	97, 247, 599
Hpy188I	TCNGA	4 cut(s)	541, 552, 753, 763
Hpy188III	TCNNGA	5 cut(s)	115, 405, 545, 726, 785
Hpy8I	GTNNAC	3 cut(s)	97, 247, 599
Hpy99I	CGWCG	3 cut(s)	62, 89, 855
HpyAV	CCTTC	2 cut(s)	85, 717
HpyCH4III	ACNGT	2 cut(s)	12, 373
HpyCH4IV	ACGT	4 cut(s)	18, 42, 776, 850
HpyCH4V	TGCA	7 cut(s)	15, 382, 441, 491, 594, 663, 808
HpyF10VI	GCNNNNNNNGC	7 cut(s)	21, 35, 62, 81, 171, 322, 447
HpyF3I	CTNAG	2 cut(s)	202, 321
HpySE526I	ACGT	4 cut(s)	18, 42, 776, 850
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	3 cut(s)	84, 157, 690
HspAI	GCGC	4 cut(s)	54, 68, 450, 452
KpnI	GGTACC	1 cut(s)	707
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	5 cut(s)	208, 541, 547, 575, 629
LmnI	GCTCC	2 cut(s)	149, 313
Lsp1109I	GCAGC	2 cut(s)	38, 503
LweI	GCATC	1 cut(s)	731
MaeI	CTAG	2 cut(s)	405, 865
MaeII	ACGT	4 cut(s)	18, 42, 776, 850
MalI	GATC	5 cut(s)	210, 543, 549, 577, 631
MboI	GATC	5 cut(s)	208, 541, 547, 575, 629
MboII	GAAGA	7 cut(s)	16, 218, 357, 570, 662, 759, 809
MflI	RGATCY	1 cut(s)	575
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	2 cut(s)	644, 860
MlyI	GAGTC	2 cut(s)	608, 723
MseI	TTAA	3 cut(s)	342, 477, 626
MspA1I	CMGCKG	2 cut(s)	320, 494
MspI	CCGG	7 cut(s)	277, 294, 311, 326, 333, 431, 459
MspR9I	CCNGG	2 cut(s)	176, 459
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	176
MvnI	CGCG	2 cut(s)	116, 452
MwoI	GCNNNNNNNGC	7 cut(s)	21, 35, 62, 81, 171, 322, 447
NciI	CCSGG	1 cut(s)	459
NdeI	CATATG	1 cut(s)	791
NdeII	GATC	5 cut(s)	208, 541, 547, 575, 629
NlaIII	CATG	3 cut(s)	84, 157, 690
NlaIV	GGNNCC	5 cut(s)	135, 315, 675, 696, 705
NruI	TCGCGA	1 cut(s)	116
NspI	RCATGY	2 cut(s)	84, 157
PaeI	GCATGC	1 cut(s)	84
PalAI	GGCGCGCC	1 cut(s)	450
PauI	GCGCGC	1 cut(s)	450
PctI	GAATGC	1 cut(s)	382
PfeI	GAWTC	5 cut(s)	297, 329, 534, 754, 764
PkrI	GCNGC	5 cut(s)	31, 53, 67, 456, 493
PleI	GAGTC	2 cut(s)	608, 723
PpsI	GAGTC	2 cut(s)	608, 723
Psp1406I	AACGTT	2 cut(s)	18, 776
Psp6I	CCWGG	1 cut(s)	174
PspFI	CCCAGC	2 cut(s)	75, 494
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	5 cut(s)	135, 315, 675, 696, 705
PspPI	GGNCC	2 cut(s)	308, 738
PstI	CTGCAG	2 cut(s)	493, 596
PstNI	CAGNNNCTG	1 cut(s)	757
PsuI	RGATCY	1 cut(s)	575
PteI	GCGCGC	1 cut(s)	450
PvuII	CAGCTG	2 cut(s)	320, 494
RruI	TCGCGA	1 cut(s)	116
RsaI	GTAC	3 cut(s)	191, 705, 838
RsaNI	GTAC	3 cut(s)	190, 704, 837
SaqAI	TTAA	3 cut(s)	342, 477, 626
SatI	GCNGC	5 cut(s)	30, 52, 66, 455, 492
Sau3AI	GATC	5 cut(s)	208, 541, 547, 575, 629
Sau96I	GGNCC	2 cut(s)	308, 738
SchI	GAGTC	2 cut(s)	608, 723
ScrFI	CCNGG	2 cut(s)	176, 459
SduI	GDGCHC	1 cut(s)	146
SfaNI	GCATC	1 cut(s)	731
SfcI	CTRYAG	3 cut(s)	489, 592, 717
SgsI	GGCGCGCC	1 cut(s)	450
SphI	GCATGC	1 cut(s)	84
Sse9I	AATT	2 cut(s)	644, 860
SsiI	CCGC	7 cut(s)	29, 32, 65, 336, 446, 455, 713
SspMI	CTAG	2 cut(s)	405, 865
StyD4I	CCNGG	2 cut(s)	174, 457
TaaI	ACNGT	2 cut(s)	12, 373
TaiI	ACGT	4 cut(s)	21, 45, 779, 853
TaqI	TCGA	1 cut(s)	211
TasI	AATT	2 cut(s)	644, 860
TauI	GCSGC	3 cut(s)	32, 68, 457
TfiI	GAWTC	5 cut(s)	297, 329, 534, 754, 764
Tru1I	TTAA	3 cut(s)	342, 477, 626
Tru9I	TTAA	3 cut(s)	342, 477, 626
TscAI	CASTG	1 cut(s)	17
TseI	GCWGC	2 cut(s)	51, 491
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	17
XbaI	TCTAGA	1 cut(s)	404
XceI	RCATGY	2 cut(s)	84, 157
XcmI	CCANNNNNNNNNTGG	2 cut(s)	182, 684
XspI	CTAG	2 cut(s)	405, 865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.