Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000210.1

Orthogroup ID

OG0015021

Physical Location & Seq

Genomic Coordinates Forward (+)

67464 .. 69544

Gene Structure 2081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000210.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

atgaagatacagtgtaacgtgtgcgagacggcggaggcgaacgtgctctgctgcgccgacgaggcggcgctctgctgggcctgcgacgagaaggtccacgccgccaacaagctcgccagcaagcaccagagggttcctctctccgcctcccacatgcccaagtgcgatatctgccaggaggcggttgggtattttttctgtttggaggatagagctctgctgtgtaggaactgtgatgttgcagtacatactgcgaatagttttgtttccggtcaccggaggtttttgctgaccggaattaaagttgggccggagtccagtccacctgggcctggtggtggtggtggtggtggtgttgctgggtcgtcttcttctgtcaaaccggactctggggctgcgtcgaaatgtgaagcaaacattcaattggcggaggaatgcaaagtggcgccgtcaagtgttgctgggatgtcttttgctggtggttcggcagctgggtctggtccacagtggcctatggatgagtttctgggattcactgatttcgatcagagctttgggtacatggataatggatcgtctaaggctgactgcggtaaacttggggcttctgattcatcaattttaagatcatctgaggaggagcaagagggatacgagtgcataggtcaggtgccagagatctcttggatggtgccagaggtaccttccccgcctacatcctcggggctatactggcctaaaacttatcagaacccatcggattctgcagtgtttgttccagacgctgactgcggtaaacttggggcttctgattcatcaattttaagatcatctgaggaggagcaagagggatacgagtgcataggtcaggtgccagagatctcttggatggtgccagaggtaccttccccgcctacatcctcggggctatactggcctaaaacttatcagaacccatcggattctgcagtgtttgttccagacgtttgctattcagaaatggaaaatcctcttcactgtcaacagaatggtactgtctcaaaacgtcgtaggcaattctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000989 GO:0003674 GO:0008150 GO:0009889 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

353

Amino Acids

37.53

Weight (kDa)

4.64

Isoelectric Point (pI)

66.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10240
fragaria_vesca	FvH4_3g17750
malus_domestica	MD03G1247700.v1.1 MD11G1269800.v1.1
prunus_persica	Prupe.4G156600_v2.0.a1
pyrus_communis	pycom03g19640 pycom11g23830
rosa_chinensis	RchiOBHm_Chr5g0029541
rosa_laevigata	RLG00000033177
rosa_multiflora	Rmu_sc0000210.1_g000014
rosa_roxburghii	Rroxscaffold_1G00050400
rosa_samantha	Rh5AG206900 Rh5BG205600 Rh5CG227700 Rh5DG209300
rosa_wichuraiana	Rw5G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc65I	GGTACC	2 cut(s)	700, 901
AccB1I	GGYRCC	7 cut(s)	445, 670, 691, 700, 871, 892, 901
AclWI	GGATC	1 cut(s)	580
AcyI	GRCGYC	1 cut(s)	446
AfaI	GTAC	5 cut(s)	246, 560, 702, 903, 1033
AfiI	CCNNNNNNNGG	5 cut(s)	181, 276, 332, 338, 389
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	1 cut(s)	422
AjnI	CCWGG	3 cut(s)	174, 325, 331
AluBI	AGCT	4 cut(s)	112, 215, 491, 552
AluI	AGCT	4 cut(s)	112, 215, 491, 552
Alw21I	GWGCWC	2 cut(s)	48, 217
Alw26I	GTCTC	2 cut(s)	20, 1042
AlwI	GGATC	1 cut(s)	580
AlwNI	CAGNNNCTG	1 cut(s)	785
Ama87I	CYCGRG	2 cut(s)	721, 922
AoxI	GGCC	6 cut(s)	78, 308, 329, 509, 734, 935
ApeKI	GCWGC	3 cut(s)	51, 395, 488
Asp718I	GGTACC	2 cut(s)	700, 901
AspLEI	GCGC	3 cut(s)	56, 70, 448
AspS9I	GGNCC	5 cut(s)	78, 94, 308, 329, 500
AsuHPI	GGTGA	1 cut(s)	266
AvaI	CYCGRG	2 cut(s)	721, 922
AvaII	GGWCC	2 cut(s)	94, 500
BanI	GGYRCC	7 cut(s)	445, 670, 691, 700, 871, 892, 901
BanII	GRGCYC	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	2 cut(s)	48, 217
BbvI	GCAGC	3 cut(s)	38, 382, 500
BccI	CCATC	4 cut(s)	682, 763, 883, 964
BceAI	ACGGC	2 cut(s)	45, 433
BciT130I	CCWGG	3 cut(s)	176, 327, 333
BciVI	GTATCC	2 cut(s)	644, 845
BcoDI	GTCTC	2 cut(s)	20, 1042
BfmI	CTRYAG	2 cut(s)	765, 966
BfoI	RGCGCY	2 cut(s)	71, 449
BfuI	GTATCC	2 cut(s)	644, 845
BglI	GCCNNNNNGGC	1 cut(s)	62
BglII	AGATCT	2 cut(s)	678, 879
BisI	GCNGC	5 cut(s)	52, 66, 102, 396, 489
BlsI	GCNGC	5 cut(s)	53, 67, 103, 397, 490
Bme1390I	CCNGG	3 cut(s)	176, 327, 333
Bme18I	GGWCC	2 cut(s)	94, 500
BmeT110I	CYCGRG	2 cut(s)	721, 922
BmgT120I	GGNCC	5 cut(s)	78, 94, 308, 329, 500
BmiI	GGNNCC	8 cut(s)	135, 447, 672, 693, 702, 873, 894, 903
BmrFI	CCNGG	3 cut(s)	176, 327, 333
BpiI	GAAGAC	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
BsaBI	GATNNNNATC	1 cut(s)	543
BsaHI	GRCGYC	1 cut(s)	446
BsaJI	CCNNGG	3 cut(s)	326, 720, 921
BsaWI	WCCGGW	4 cut(s)	269, 276, 293, 382
Bsc4I	CCNNNNNNNGG	5 cut(s)	181, 276, 332, 338, 389
Bse1I	ACTGG	3 cut(s)	318, 737, 938
Bse8I	GATNNNNATC	1 cut(s)	543
BseBI	CCWGG	3 cut(s)	176, 327, 333
BseDI	CCNNGG	3 cut(s)	326, 720, 921
BseGI	GGATG	6 cut(s)	471, 523, 693, 716, 894, 917
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	5 cut(s)	181, 276, 332, 338, 389
BseMII	CTCAG	2 cut(s)	624, 825
BseNI	ACTGG	3 cut(s)	318, 737, 938
BseRI	GAGGAG	4 cut(s)	650, 653, 851, 854
BseXI	GCAGC	3 cut(s)	38, 382, 500
BseYI	CCCAGC	4 cut(s)	75, 359, 461, 491
BshFI	GGCC	6 cut(s)	80, 310, 331, 511, 736, 937
BshNI	GGYRCC	7 cut(s)	445, 670, 691, 700, 871, 892, 901
BsiHKAI	GWGCWC	2 cut(s)	48, 217
BsiHKCI	CYCGRG	2 cut(s)	721, 922
BsiSI	CCGG	5 cut(s)	270, 277, 294, 311, 383
BslI	CCNNNNNNNGG	5 cut(s)	181, 276, 332, 338, 389
BsmAI	GTCTC	2 cut(s)	20, 1042
BsmBI	CGTCTC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	440
BsnI	GGCC	6 cut(s)	80, 310, 331, 511, 736, 937
BsoBI	CYCGRG	2 cut(s)	721, 922
Bsp1286I	GDGCHC	2 cut(s)	48, 217
Bsp143I	GATC	6 cut(s)	544, 572, 626, 678, 827, 879
BspANI	GGCC	6 cut(s)	80, 310, 331, 511, 736, 937
BspCNI	CTCAG	2 cut(s)	625, 826
BspLI	GGNNCC	8 cut(s)	135, 447, 672, 693, 702, 873, 894, 903
BspMAI	CTGCAG	2 cut(s)	769, 970
BspPI	GGATC	1 cut(s)	580
BspT107I	GGYRCC	7 cut(s)	445, 670, 691, 700, 871, 892, 901
BsrI	ACTGG	3 cut(s)	318, 737, 938
BssECI	CCNNGG	3 cut(s)	326, 720, 921
BssMI	GATC	6 cut(s)	544, 572, 626, 678, 827, 879
BssNI	GRCGYC	1 cut(s)	446
Bst2UI	CCWGG	3 cut(s)	176, 327, 333
Bst4CI	ACNGT	5 cut(s)	12, 233, 507, 1019, 1036
Bst6I	CTCTTC	1 cut(s)	1017
BstACI	GRCGYC	1 cut(s)	446
BstC8I	GCNNGC	4 cut(s)	82, 114, 118, 122
BstDEI	CTNAG	3 cut(s)	579, 633, 834
BstEII	GGTNACC	1 cut(s)	272
BstF5I	GGATG	6 cut(s)	471, 523, 693, 716, 894, 917
BstH2I	RGCGCY	2 cut(s)	71, 449
BstHHI	GCGC	3 cut(s)	56, 70, 448
BstKTI	GATC	6 cut(s)	547, 575, 629, 681, 830, 882
BstMAI	GTCTC	2 cut(s)	20, 1042
BstMBI	GATC	6 cut(s)	544, 572, 626, 678, 827, 879
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 81, 171, 733, 934
BstNI	CCWGG	3 cut(s)	176, 327, 333
BstNSI	RCATGY	1 cut(s)	157
BstPI	GGTNACC	1 cut(s)	272
BstSCI	CCNGG	3 cut(s)	174, 325, 331
BstSFI	CTRYAG	2 cut(s)	765, 966
BstV1I	GCAGC	3 cut(s)	38, 382, 500
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	2 cut(s)	678, 879
BstYI	RGATCY	2 cut(s)	678, 879
BsuI	GTATCC	2 cut(s)	644, 845
BsuRI	GGCC	6 cut(s)	80, 310, 331, 511, 736, 937
BtsCI	GGATG	6 cut(s)	471, 523, 693, 716, 894, 917
BtsI	GCAGTG	2 cut(s)	774, 975
BtsIMutI	CAGTG	6 cut(s)	17, 512, 534, 774, 975, 1015
Cac8I	GCNNGC	4 cut(s)	82, 114, 118, 122
CaiI	CAGNNNCTG	1 cut(s)	785
CfoI	GCGC	3 cut(s)	56, 70, 448
Cfr13I	GGNCC	5 cut(s)	78, 94, 308, 329, 500
CseI	GACGC	2 cut(s)	387, 791
Csp6I	GTAC	5 cut(s)	245, 559, 701, 902, 1032
CviAII	CATG	2 cut(s)	154, 562
CviQI	GTAC	5 cut(s)	245, 559, 701, 902, 1032
DdeI	CTNAG	3 cut(s)	579, 633, 834
DinI	GGCGCC	1 cut(s)	447
DpnI	GATC	6 cut(s)	546, 574, 628, 680, 829, 881
DpnII	GATC	6 cut(s)	544, 572, 626, 678, 827, 879
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	1017
EarI	CTCTTC	1 cut(s)	1017
EciI	GGCGGA	3 cut(s)	47, 133, 443
Ecl136II	GAGCTC	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	217
Eco32I	GATATC	1 cut(s)	169
Eco47I	GGWCC	2 cut(s)	94, 500
Eco53kI	GAGCTC	1 cut(s)	215
Eco88I	CYCGRG	2 cut(s)	721, 922
Eco91I	GGTNACC	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	215
EcoO65I	GGTNACC	1 cut(s)	272
EcoRII	CCWGG	3 cut(s)	174, 325, 331
EcoRV	GATATC	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	217
EgeI	GGCGCC	1 cut(s)	447
EheI	GGCGCC	1 cut(s)	447
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	2 cut(s)	157, 565
FaiI	YATR	8 cut(s)	155, 249, 515, 563, 662, 730, 863, 931
FatI	CATG	2 cut(s)	153, 561
FauI	CCCGC	2 cut(s)	717, 918
Fnu4HI	GCNGC	5 cut(s)	52, 66, 102, 396, 489
FokI	GGATG	6 cut(s)	478, 530, 700, 703, 901, 904
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	5 cut(s)	52, 66, 102, 396, 489
GlaI	GCGC	3 cut(s)	55, 69, 447
GluI	GCNGC	5 cut(s)	52, 66, 102, 396, 489
GsaI	CCCAGC	4 cut(s)	79, 363, 465, 495
HaeII	RGCGCY	2 cut(s)	71, 449
HaeIII	GGCC	6 cut(s)	80, 310, 331, 511, 736, 937
HapII	CCGG	5 cut(s)	270, 277, 294, 311, 383
HgaI	GACGC	2 cut(s)	387, 791
HhaI	GCGC	3 cut(s)	56, 70, 448
Hin1I	GRCGYC	1 cut(s)	446
Hin1II	CATG	2 cut(s)	157, 565
Hin6I	GCGC	3 cut(s)	54, 68, 446
HinP1I	GCGC	3 cut(s)	54, 68, 446
HincII	GTYRAC	1 cut(s)	1022
HindII	GTYRAC	1 cut(s)	1022
HinfI	GANTC	7 cut(s)	314, 386, 531, 611, 761, 812, 962
HpaII	CCGG	5 cut(s)	270, 277, 294, 311, 383
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	6 cut(s)	97, 323, 503, 596, 797, 1022
Hpy188III	TCNNGA	2 cut(s)	779, 980
Hpy8I	GTNNAC	6 cut(s)	97, 323, 503, 596, 797, 1022
Hpy99I	CGWCG	4 cut(s)	62, 89, 403, 1050
HpyAV	CCTTC	3 cut(s)	85, 714, 915
HpyCH4III	ACNGT	5 cut(s)	12, 233, 507, 1019, 1036
HpyCH4IV	ACGT	4 cut(s)	18, 42, 984, 1045
HpyCH4V	TGCA	6 cut(s)	242, 438, 660, 767, 861, 968
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 81, 171, 733, 934
HpyF3I	CTNAG	3 cut(s)	579, 633, 834
HpySE526I	ACGT	4 cut(s)	18, 42, 984, 1045
Hsp92I	GRCGYC	1 cut(s)	446
Hsp92II	CATG	2 cut(s)	157, 565
HspAI	GCGC	3 cut(s)	54, 68, 446
KasI	GGCGCC	1 cut(s)	445
KpnI	GGTACC	2 cut(s)	704, 905
Kzo9I	GATC	6 cut(s)	544, 572, 626, 678, 827, 879
LmnI	GCTCC	2 cut(s)	640, 841
Lsp1109I	GCAGC	3 cut(s)	38, 382, 500
MaeII	ACGT	4 cut(s)	18, 42, 984, 1045
MaeIII	GTNAC	2 cut(s)	14, 272
MalI	GATC	6 cut(s)	546, 574, 628, 680, 829, 881
MboI	GATC	6 cut(s)	544, 572, 626, 678, 827, 879
MboII	GAAGA	4 cut(s)	16, 360, 363, 1004
MfeI	CAATTG	1 cut(s)	422
MflI	RGATCY	2 cut(s)	678, 879
MhlI	GDGCHC	2 cut(s)	48, 217
MluCI	AATT	5 cut(s)	297, 422, 618, 819, 1055
Mly113I	GGCGCC	1 cut(s)	446
MlyI	GAGTC	2 cut(s)	323, 380
MseI	TTAA	3 cut(s)	300, 623, 824
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	5 cut(s)	270, 277, 294, 311, 383
MspR9I	CCNGG	3 cut(s)	176, 327, 333
MunI	CAATTG	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	440
MvaI	CCWGG	3 cut(s)	176, 327, 333
MwoI	GCNNNNNNNGC	5 cut(s)	62, 81, 171, 733, 934
NarI	GGCGCC	1 cut(s)	446
NdeII	GATC	6 cut(s)	544, 572, 626, 678, 827, 879
NlaIII	CATG	2 cut(s)	157, 565
NlaIV	GGNNCC	8 cut(s)	135, 447, 672, 693, 702, 873, 894, 903
NmuCI	GTSAC	1 cut(s)	272
NspI	RCATGY	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PctI	GAATGC	1 cut(s)	440
PfeI	GAWTC	5 cut(s)	531, 611, 761, 812, 962
PkrI	GCNGC	5 cut(s)	53, 67, 103, 397, 490
PleI	GAGTC	2 cut(s)	322, 380
PluTI	GGCGCC	1 cut(s)	449
PpsI	GAGTC	2 cut(s)	322, 380
Psp124BI	GAGCTC	1 cut(s)	217
Psp6I	CCWGG	3 cut(s)	174, 325, 331
PspEI	GGTNACC	1 cut(s)	272
PspFI	CCCAGC	4 cut(s)	75, 359, 461, 491
PspGI	CCWGG	3 cut(s)	174, 325, 331
PspN4I	GGNNCC	8 cut(s)	135, 447, 672, 693, 702, 873, 894, 903
PspPI	GGNCC	5 cut(s)	78, 94, 308, 329, 500
PstI	CTGCAG	2 cut(s)	769, 970
PstNI	CAGNNNCTG	1 cut(s)	785
PsuI	RGATCY	2 cut(s)	678, 879
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	5 cut(s)	246, 560, 702, 903, 1033
RsaNI	GTAC	5 cut(s)	245, 559, 701, 902, 1032
SacI	GAGCTC	1 cut(s)	217
SaqAI	TTAA	3 cut(s)	300, 623, 824
SatI	GCNGC	5 cut(s)	52, 66, 102, 396, 489
Sau3AI	GATC	6 cut(s)	544, 572, 626, 678, 827, 879
Sau96I	GGNCC	5 cut(s)	78, 94, 308, 329, 500
SchI	GAGTC	2 cut(s)	323, 380
ScrFI	CCNGG	3 cut(s)	176, 327, 333
SduI	GDGCHC	2 cut(s)	48, 217
SfcI	CTRYAG	2 cut(s)	765, 966
SfoI	GGCGCC	1 cut(s)	447
SinI	GGWCC	2 cut(s)	94, 500
Sse9I	AATT	5 cut(s)	297, 422, 618, 819, 1055
SspDI	GGCGCC	1 cut(s)	445
SstI	GAGCTC	1 cut(s)	217
StyD4I	CCNGG	3 cut(s)	174, 325, 331
TaaI	ACNGT	5 cut(s)	12, 233, 507, 1019, 1036
TaiI	ACGT	4 cut(s)	21, 45, 987, 1048
TaqI	TCGA	2 cut(s)	401, 543
TasI	AATT	5 cut(s)	297, 422, 618, 819, 1055
TatI	WGTACW	1 cut(s)	244
TauI	GCSGC	2 cut(s)	68, 104
TfiI	GAWTC	5 cut(s)	531, 611, 761, 812, 962
Tru1I	TTAA	3 cut(s)	300, 623, 824
Tru9I	TTAA	3 cut(s)	300, 623, 824
TscAI	CASTG	6 cut(s)	17, 512, 541, 774, 975, 1022
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	3 cut(s)	51, 395, 488
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	3 cut(s)	17, 603, 804
TspRI	CASTG	6 cut(s)	17, 512, 541, 774, 975, 1022
VpaK11BI	GGWCC	2 cut(s)	94, 500
XceI	RCATGY	1 cut(s)	157
XcmI	CCANNNNNNNNNTGG	3 cut(s)	182, 681, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.