MD11G1269800.v1.1

salt tolerance-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015021
Physical Location & Seq
Reverse (-)
38522402 .. 38524409
2008 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1269800.v1.1.491

Sequence Viewer

Length: 870 bp
ATGAAGATACAGTGCAACGTTTGCGAGGCGGCGGAGGCCAACGTCCTCTGCTGCGCTGACGAGGCGGCGCTGTGCTGGGCGTGCGACGAGAAGGTTCACAAAGCGAACAAGCTCGCGAGCAAACACCAGAGGGTTCCTCTGTGCTCCTCCCACATGCCCAAGTGCGATATCTGCCAGGAGGCAGTTGGGTACTTTTTCTGCTTAGAAGATCGAGCTTTGCTGTGTAGAAAATGTGATGTATCTGTTCACACGGCTAATAGCTTCGTGTCGGCTCACCGGAGGTTCTTGCTGACCGGAATCAAAGTTGGGCCGGAGCCAGCTGAGCCGGATTCCGGCGAAGGTGATGGGGTTTGTGTTGGGGCGTCTTCTTCTACTATGAAGTTGCATTCTGGGTCTGCCTCTGTGTCTAGATATGAAACTCATAACCCGTTGCATGTGGAGTGCAAGGCGGCCGCGCCGCCCGGTGGAGGGATATCGTTTACCGGTGGTTCTGCAGCTGGGAGTGTTCCACAATGTTATATAGATGAGTTTCTTGGATTCTCTGATCTTGATCAGAGCTTTGACTACATTGATAATGGATCTTCAAAGGCTGACTGCAGTAAACTCGGAGGGTATGACTCGCCAGTTTTAAGATCATCTGAGGAGGAATTGGTAGACTACGAGTGCATAGGTGAGGTGCCAGAGACCTCATGGATGGTGCCACAGGTACCTTCCCCACCTACAGCATCGGGACTGTACTGGCCCAAAAGTTTTCAGAATCCGTCCGATTCTTCTACAATGTTTGTTCCAGACATTTGCCACTCACAAATGCAAAACCCTCTTCGTTCCCAACATAATGGTACTATCTCAAAACGTCGTAGGCAATTCTAG

Protein Analysis

290

Amino Acids

31.26

Weight (kDa)

5.45

Isoelectric Point (pI)

56.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 52 - 91 4.4e-07 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10240
fragaria_vesca FvH4_3g17750
malus_domestica MD03G1247700.v1.1 MD11G1269800.v1.1
prunus_persica Prupe.4G156600_v2.0.a1
pyrus_communis pycom03g19640 pycom11g23830
rosa_chinensis RchiOBHm_Chr5g0029541
rosa_laevigata RLG00000033177
rosa_multiflora Rmu_sc0000210.1_g000014
rosa_roxburghii Rroxscaffold_1G00050400
rosa_samantha Rh5AG206900 Rh5BG205600 Rh5CG227700 Rh5DG209300
rosa_wichuraiana Rw5G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 706
AccB1I GGYRCC 3 cut(s) 676, 697, 706
AccI GTMKAC 1 cut(s) 654
AccII CGCG 2 cut(s) 116, 455
AciI CCGC 6 cut(s) 29, 32, 65, 449, 453, 458
AclI AACGTT 1 cut(s) 18
AclWI GGATC 1 cut(s) 586
AcoI YGGCCR 1 cut(s) 450
AcyI GRCGYC 1 cut(s) 362
AfaI GTAC 4 cut(s) 191, 708, 737, 841
AfiI CCNNNNNNNGG 4 cut(s) 332, 464, 467, 468
AgeI ACCGGT 1 cut(s) 482
AgsI TTSAA 1 cut(s) 585
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 6 cut(s) 112, 215, 261, 320, 497, 558
AluI AGCT 6 cut(s) 112, 215, 261, 320, 497, 558
Alw21I GWGCWC 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 677
AlwI GGATC 1 cut(s) 586
AoxI GGCC 4 cut(s) 36, 308, 450, 740
ApeKI GCWGC 2 cut(s) 51, 494
AsiGI ACCGGT 1 cut(s) 482
Asp718I GGTACC 1 cut(s) 706
AspLEI GCGC 3 cut(s) 56, 70, 457
AspS9I GGNCC 2 cut(s) 308, 741
AsuC2I CCSGG 1 cut(s) 462
AsuHPI GGTGA 3 cut(s) 266, 353, 683
BanI GGYRCC 3 cut(s) 676, 697, 706
BbsI GAAGAC 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 38, 506
BccI CCATC 2 cut(s) 338, 688
BceAI ACGGC 1 cut(s) 267
BcgI CGANNNNNNTGC 2 cut(s) 586, 620
BciT130I CCWGG 1 cut(s) 176
BclI TGATCA 1 cut(s) 550
BcnI CCSGG 1 cut(s) 462
BcoDI GTCTC 1 cut(s) 677
BfaI CTAG 2 cut(s) 408, 868
BfmI CTRYAG 3 cut(s) 492, 595, 720
BfoI RGCGCY 1 cut(s) 71
BisI GCNGC 7 cut(s) 30, 52, 66, 450, 453, 458, 495
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 7 cut(s) 31, 53, 67, 451, 454, 459, 496
Bme1390I CCNGG 2 cut(s) 176, 462
BmgT120I GGNCC 2 cut(s) 308, 741
BmiI GGNNCC 5 cut(s) 135, 315, 678, 699, 708
BmrFI CCNGG 2 cut(s) 176, 462
BmsI GCATC 1 cut(s) 734
BpiI GAAGAC 1 cut(s) 357
BplI GAGNNNNNCTC 2 cut(s) 121, 153
Bpu1102I GCTNAGC 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 462
BsaBI GATNNNNATC 1 cut(s) 549
BsaHI GRCGYC 1 cut(s) 362
BsaI GGTCTC 1 cut(s) 677
BsaWI WCCGGW 3 cut(s) 276, 293, 482
Bsc4I CCNNNNNNNGG 4 cut(s) 332, 464, 467, 468
Bse118I RCCGGY 1 cut(s) 482
Bse1I ACTGG 2 cut(s) 623, 743
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 1 cut(s) 176
BseGI GGATG 1 cut(s) 699
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 4 cut(s) 332, 464, 467, 468
BseMII CTCAG 2 cut(s) 312, 630
BseNI ACTGG 2 cut(s) 623, 743
BseRI GAGGAG 2 cut(s) 136, 656
BseX3I CGGCCG 1 cut(s) 450
BseXI GCAGC 2 cut(s) 38, 506
BseYI CCCAGC 2 cut(s) 75, 497
Bsh1236I CGCG 2 cut(s) 116, 455
Bsh1285I CGRYCG 1 cut(s) 453
BshFI GGCC 4 cut(s) 38, 310, 452, 742
BshNI GGYRCC 3 cut(s) 676, 697, 706
BshTI ACCGGT 1 cut(s) 482
BsiEI CGRYCG 1 cut(s) 453
BsiHKAI GWGCWC 1 cut(s) 146
BsiSI CCGG 7 cut(s) 277, 294, 311, 326, 333, 462, 483
BslFI GGGAC 1 cut(s) 744
BslI CCNNNNNNNGG 4 cut(s) 332, 464, 467, 468
BsmAI GTCTC 1 cut(s) 677
BsmFI GGGAC 1 cut(s) 744
BsmI GAATGC 1 cut(s) 385
BsnI GGCC 4 cut(s) 38, 310, 452, 742
Bso31I GGTCTC 1 cut(s) 677
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 5 cut(s) 208, 544, 550, 578, 632
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp68I TCGCGA 1 cut(s) 116
BspACI CCGC 6 cut(s) 29, 32, 65, 449, 453, 458
BspANI GGCC 4 cut(s) 38, 310, 452, 742
BspCNI CTCAG 2 cut(s) 313, 631
BspFNI CGCG 2 cut(s) 116, 455
BspLI GGNNCC 5 cut(s) 135, 315, 678, 699, 708
BspMAI CTGCAG 2 cut(s) 496, 599
BspPI GGATC 1 cut(s) 586
BspT107I GGYRCC 3 cut(s) 676, 697, 706
BspTNI GGTCTC 1 cut(s) 677
BsrFI RCCGGY 1 cut(s) 482
BsrI ACTGG 2 cut(s) 623, 743
BssAI RCCGGY 1 cut(s) 482
BssMI GATC 5 cut(s) 208, 544, 550, 578, 632
BssNI GRCGYC 1 cut(s) 362
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 2 cut(s) 12, 735
Bst6I CTCTTC 1 cut(s) 825
BstACI GRCGYC 1 cut(s) 362
BstAPI GCANNNNNTGC 1 cut(s) 21
BstC8I GCNNGC 4 cut(s) 82, 114, 118, 318
BstDEI CTNAG 3 cut(s) 202, 321, 639
BstF5I GGATG 1 cut(s) 699
BstFNI CGCG 2 cut(s) 116, 455
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 3 cut(s) 56, 70, 457
BstKTI GATC 5 cut(s) 211, 547, 553, 581, 635
BstMAI GTCTC 1 cut(s) 677
BstMBI GATC 5 cut(s) 208, 544, 550, 578, 632
BstMCI CGRYCG 1 cut(s) 453
BstMWI GCNNNNNNNGC 6 cut(s) 21, 35, 62, 81, 171, 322
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 2 cut(s) 157, 437
BstSCI CCNGG 2 cut(s) 174, 460
BstSFI CTRYAG 3 cut(s) 492, 595, 720
BstUI CGCG 2 cut(s) 116, 455
BstV1I GCAGC 2 cut(s) 38, 506
BstV2I GAAGAC 1 cut(s) 357
BstX2I RGATCY 1 cut(s) 578
BstXI CCANNNNNNTGG 1 cut(s) 836
BstYI RGATCY 1 cut(s) 578
BstZI CGGCCG 1 cut(s) 450
BsuRI GGCC 4 cut(s) 38, 310, 452, 742
BtsCI GGATG 1 cut(s) 699
BtsIMutI CAGTG 1 cut(s) 17
BtuMI TCGCGA 1 cut(s) 116
Cac8I GCNNGC 4 cut(s) 82, 114, 118, 318
CciNI GCGGCCGC 1 cut(s) 450
CfoI GCGC 3 cut(s) 56, 70, 457
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 2 cut(s) 308, 741
CseI GACGC 1 cut(s) 351
Csp6I GTAC 4 cut(s) 190, 707, 736, 840
CspAI ACCGGT 1 cut(s) 482
CviAII CATG 3 cut(s) 154, 434, 690
CviQI GTAC 4 cut(s) 190, 707, 736, 840
DdeI CTNAG 3 cut(s) 202, 321, 639
DpnI GATC 5 cut(s) 210, 546, 552, 580, 634
DpnII GATC 5 cut(s) 208, 544, 550, 578, 632
EaeI YGGCCR 1 cut(s) 450
EagI CGGCCG 1 cut(s) 450
Eam1104I CTCTTC 1 cut(s) 825
EarI CTCTTC 1 cut(s) 825
EciI GGCGGA 1 cut(s) 47
EclXI CGGCCG 1 cut(s) 450
Eco31I GGTCTC 1 cut(s) 677
Eco32I GATATC 2 cut(s) 169, 474
Eco52I CGGCCG 1 cut(s) 450
EcoRII CCWGG 1 cut(s) 174
EcoRV GATATC 2 cut(s) 169, 474
FaeI CATG 3 cut(s) 157, 437, 693
FaqI GGGAC 1 cut(s) 744
FatI CATG 3 cut(s) 153, 433, 689
FbaI TGATCA 1 cut(s) 550
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 7 cut(s) 30, 52, 66, 450, 453, 458, 495
FokI GGATG 1 cut(s) 706
Fsp4HI GCNGC 7 cut(s) 30, 52, 66, 450, 453, 458, 495
FspBI CTAG 2 cut(s) 408, 868
GlaI GCGC 3 cut(s) 55, 69, 456
GluI GCNGC 7 cut(s) 30, 52, 66, 450, 453, 458, 495
GsaI CCCAGC 2 cut(s) 79, 501
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 4 cut(s) 38, 310, 452, 742
HapII CCGG 7 cut(s) 277, 294, 311, 326, 333, 462, 483
HgaI GACGC 1 cut(s) 351
HhaI GCGC 3 cut(s) 56, 70, 457
Hin1I GRCGYC 1 cut(s) 362
Hin1II CATG 3 cut(s) 157, 437, 693
Hin6I GCGC 3 cut(s) 54, 68, 455
HinP1I GCGC 3 cut(s) 54, 68, 455
HinfI GANTC 6 cut(s) 297, 329, 537, 617, 757, 767
HpaII CCGG 7 cut(s) 277, 294, 311, 326, 333, 462, 483
HphI GGTGA 3 cut(s) 266, 353, 683
Hpy166II GTNNAC 5 cut(s) 97, 247, 480, 602, 655
Hpy188I TCNGA 6 cut(s) 544, 555, 608, 640, 756, 766
Hpy188III TCNNGA 5 cut(s) 115, 408, 548, 729, 788
Hpy8I GTNNAC 5 cut(s) 97, 247, 480, 602, 655
Hpy99I CGWCG 2 cut(s) 89, 858
HpyAV CCTTC 3 cut(s) 85, 332, 720
HpyCH4III ACNGT 2 cut(s) 12, 735
HpyCH4IV ACGT 3 cut(s) 18, 42, 853
HpyCH4V TGCA 8 cut(s) 15, 385, 433, 444, 494, 597, 666, 811
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 35, 62, 81, 171, 322
HpyF3I CTNAG 3 cut(s) 202, 321, 639
HpySE526I ACGT 3 cut(s) 18, 42, 853
Hsp92I GRCGYC 1 cut(s) 362
Hsp92II CATG 3 cut(s) 157, 437, 693
HspAI GCGC 3 cut(s) 54, 68, 455
KpnI GGTACC 1 cut(s) 710
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 5 cut(s) 208, 544, 550, 578, 632
LmnI GCTCC 2 cut(s) 149, 313
Lsp1109I GCAGC 2 cut(s) 38, 506
LweI GCATC 1 cut(s) 734
MaeI CTAG 2 cut(s) 408, 868
MaeII ACGT 3 cut(s) 18, 42, 853
MalI GATC 5 cut(s) 210, 546, 552, 580, 634
MboI GATC 5 cut(s) 208, 544, 550, 578, 632
MboII GAAGA 7 cut(s) 16, 218, 357, 360, 573, 762, 812
MflI RGATCY 1 cut(s) 578
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 2 cut(s) 647, 863
MlyI GAGTC 1 cut(s) 611
MseI TTAA 1 cut(s) 629
MspA1I CMGCKG 2 cut(s) 320, 497
MspI CCGG 7 cut(s) 277, 294, 311, 326, 333, 462, 483
MspR9I CCNGG 2 cut(s) 176, 462
Mva1269I GAATGC 1 cut(s) 385
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 2 cut(s) 116, 455
MwoI GCNNNNNNNGC 6 cut(s) 21, 35, 62, 81, 171, 322
NciI CCSGG 1 cut(s) 462
NdeII GATC 5 cut(s) 208, 544, 550, 578, 632
NlaIII CATG 3 cut(s) 157, 437, 693
NlaIV GGNNCC 5 cut(s) 135, 315, 678, 699, 708
NotI GCGGCCGC 1 cut(s) 450
NruI TCGCGA 1 cut(s) 116
NspI RCATGY 2 cut(s) 157, 437
PctI GAATGC 1 cut(s) 385
PfeI GAWTC 5 cut(s) 297, 329, 537, 757, 767
PinAI ACCGGT 1 cut(s) 482
PkrI GCNGC 7 cut(s) 31, 53, 67, 451, 454, 459, 496
PleI GAGTC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 611
Psp1406I AACGTT 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 174
PspFI CCCAGC 2 cut(s) 75, 497
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 5 cut(s) 135, 315, 678, 699, 708
PspPI GGNCC 2 cut(s) 308, 741
PstI CTGCAG 2 cut(s) 496, 599
PsuI RGATCY 1 cut(s) 578
PvuII CAGCTG 2 cut(s) 320, 497
RruI TCGCGA 1 cut(s) 116
RsaI GTAC 4 cut(s) 191, 708, 737, 841
RsaNI GTAC 4 cut(s) 190, 707, 736, 840
SaqAI TTAA 1 cut(s) 629
SatI GCNGC 7 cut(s) 30, 52, 66, 450, 453, 458, 495
Sau3AI GATC 5 cut(s) 208, 544, 550, 578, 632
Sau96I GGNCC 2 cut(s) 308, 741
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 2 cut(s) 176, 462
SduI GDGCHC 1 cut(s) 146
SfaNI GCATC 1 cut(s) 734
SfcI CTRYAG 3 cut(s) 492, 595, 720
Sse9I AATT 2 cut(s) 647, 863
SsiI CCGC 6 cut(s) 29, 32, 65, 449, 453, 458
SspMI CTAG 2 cut(s) 408, 868
StyD4I CCNGG 2 cut(s) 174, 460
TaaI ACNGT 2 cut(s) 12, 735
TaiI ACGT 3 cut(s) 21, 45, 856
TaqI TCGA 1 cut(s) 211
TasI AATT 2 cut(s) 647, 863
TatI WGTACW 1 cut(s) 735
TauI GCSGC 5 cut(s) 32, 68, 452, 455, 460
TfiI GAWTC 5 cut(s) 297, 329, 537, 757, 767
Tru1I TTAA 1 cut(s) 629
Tru9I TTAA 1 cut(s) 629
TscAI CASTG 1 cut(s) 17
TseI GCWGC 2 cut(s) 51, 494
TspDTI ATGAA 3 cut(s) 17, 392, 429
TspGWI ACGGA 1 cut(s) 750
TspRI CASTG 1 cut(s) 17
XbaI TCTAGA 1 cut(s) 407
XceI RCATGY 2 cut(s) 157, 437
XcmI CCANNNNNNNNNTGG 2 cut(s) 182, 687
XmiI GTMKAC 1 cut(s) 654
XspI CTAG 2 cut(s) 408, 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.