Rroxscaffold_1G00050400

salt tolerance-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015021
Physical Location & Seq
Reverse (-)
70941880 .. 70943675
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00050400.1

Sequence Viewer

Length: 867 bp
ATGAAGATACAGTGTAACGTGTGCGAGACGGCGGAGGCGAACGTGCTCTGCTGCGCCGACGAGGCGGCGCTCTGCTGGCCCTGCGACGAGAAGGTCCACGCCGCCAACAAGCTCGCCGGCAAGCACCAGAGGGTTCCTCTCTCCGCTTCCCAAATGCCCAAGTGCGATATCTGCCAGGAGGCGGTTGGGTATTTTTTCTGTCTGGAGGATAGAGCTCTGCTGTGTAGGAACTGTGATGTTGCTGTACATACTGCGAATAGTTTCGTTTCCGGTCACCGGAGGTTTTTGCTGACCGGAATTAAAGTTGGGCCGGAGTGCAGTCCACCTGGGTCTGGTGGTGGTGGTGGTGGTGGTGATGGTGTTGCTGGGTCGTCTTCTTCTGTCAAATCGGACTGTGGGGCTGCGTCGAAATGTGAAGCAAACATTCAATTGGCGGAGGAATGCAAAGTGGCGCCGTCAAGTGTTGCTGGGATGTCTTTTGCTGGTGGTTCTGCAGCTGGGTCTGTTCCACACTGGTCTATAGATGAGTTTCTGGGATTCACTGATTTCGATCAGAGCTTTGGGTACATGGATAATGGATCGTCGAAGGCTGACTACGGTAAACTTGGGGCTTCTGATTCATCAATTTTAAGATCATCTGAGGAGGAGCAAGAGGAATACGAGTGCATAGGTCAGGTGCCAGAGATCTCTTGGATGGTGCCAAAGGTACCTTCCCCGCCAACATCCTCGGGGCTATACTGGCCTAAAACTTATCAGAACCCATCGGATTCTGCAGTGTTTGTTCCAGACGTTTGCTATTCAGAAATGGAAAATCCTCATCACTGTCAACAGAATGGTACTGTCTCAAAACGTCGTAGGCAATTCTAA

Protein Analysis

288

Amino Acids

30.65

Weight (kDa)

5.02

Isoelectric Point (pI)

60.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 51 - 93 5.5e-08 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10240
fragaria_vesca FvH4_3g17750
malus_domestica MD03G1247700.v1.1 MD11G1269800.v1.1
prunus_persica Prupe.4G156600_v2.0.a1
pyrus_communis pycom03g19640 pycom11g23830
rosa_chinensis RchiOBHm_Chr5g0029541
rosa_laevigata RLG00000033177
rosa_multiflora Rmu_sc0000210.1_g000014
rosa_roxburghii Rroxscaffold_1G00050400
rosa_samantha Rh5AG206900 Rh5BG205600 Rh5CG227700 Rh5DG209300
rosa_wichuraiana Rw5G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
Acc65I GGTACC 1 cut(s) 706
AccB1I GGYRCC 4 cut(s) 451, 676, 697, 706
AciI CCGC 7 cut(s) 32, 65, 102, 144, 182, 434, 716
AclWI GGATC 1 cut(s) 586
AcyI GRCGYC 1 cut(s) 452
AfaI GTAC 4 cut(s) 246, 566, 708, 838
AfiI CCNNNNNNNGG 3 cut(s) 181, 276, 332
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 1 cut(s) 428
AjnI CCWGG 2 cut(s) 174, 325
AjuI GAANNNNNNNTTGG 2 cut(s) 694, 726
AluBI AGCT 4 cut(s) 112, 215, 497, 558
AluI AGCT 4 cut(s) 112, 215, 497, 558
Alw21I GWGCWC 2 cut(s) 48, 217
Alw26I GTCTC 2 cut(s) 20, 847
AlwI GGATC 1 cut(s) 586
Ama87I CYCGRG 1 cut(s) 727
AoxI GGCC 3 cut(s) 77, 308, 740
ApeKI GCWGC 3 cut(s) 51, 401, 494
Asp700I GAANNNNTTC 1 cut(s) 260
Asp718I GGTACC 1 cut(s) 706
AspLEI GCGC 3 cut(s) 56, 70, 454
AspS9I GGNCC 3 cut(s) 78, 94, 308
AsuHPI GGTGA 2 cut(s) 266, 365
AvaI CYCGRG 1 cut(s) 727
AvaII GGWCC 1 cut(s) 94
BanI GGYRCC 4 cut(s) 451, 676, 697, 706
BanII GRGCYC 1 cut(s) 217
BarI GAAGNNNNNNTAC 2 cut(s) 578, 610
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 2 cut(s) 48, 217
BbvI GCAGC 3 cut(s) 38, 388, 506
BccI CCATC 3 cut(s) 350, 688, 769
BceAI ACGGC 2 cut(s) 45, 439
BciT130I CCWGG 2 cut(s) 176, 327
BcoDI GTCTC 2 cut(s) 20, 847
BfmI CTRYAG 3 cut(s) 492, 519, 771
BfoI RGCGCY 2 cut(s) 71, 455
BglI GCCNNNNNGGC 1 cut(s) 62
BglII AGATCT 1 cut(s) 684
BisI GCNGC 5 cut(s) 52, 66, 102, 402, 495
BlsI GCNGC 5 cut(s) 53, 67, 103, 403, 496
Bme1390I CCNGG 2 cut(s) 176, 327
Bme18I GGWCC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 727
BmgT120I GGNCC 3 cut(s) 78, 94, 308
BmiI GGNNCC 5 cut(s) 135, 453, 678, 699, 708
BmrFI CCNGG 2 cut(s) 176, 327
BpiI GAAGAC 1 cut(s) 366
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BpmI CTGGAG 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 549
BsaHI GRCGYC 1 cut(s) 452
BsaJI CCNNGG 2 cut(s) 326, 726
BsaWI WCCGGW 3 cut(s) 269, 276, 293
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 276, 332
Bse118I RCCGGY 1 cut(s) 116
Bse1I ACTGG 2 cut(s) 518, 743
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 2 cut(s) 176, 327
BseDI CCNNGG 2 cut(s) 326, 726
BseGI GGATG 3 cut(s) 477, 699, 722
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 3 cut(s) 181, 276, 332
BseMII CTCAG 1 cut(s) 630
BseNI ACTGG 2 cut(s) 518, 743
BseRI GAGGAG 2 cut(s) 656, 659
BseXI GCAGC 3 cut(s) 38, 388, 506
BseYI CCCAGC 3 cut(s) 365, 467, 497
BsgI GTGCAG 1 cut(s) 337
BshFI GGCC 3 cut(s) 79, 310, 742
BshNI GGYRCC 4 cut(s) 451, 676, 697, 706
BsiHKAI GWGCWC 2 cut(s) 48, 217
BsiHKCI CYCGRG 1 cut(s) 727
BsiSI CCGG 5 cut(s) 117, 270, 277, 294, 311
BslI CCNNNNNNNGG 3 cut(s) 181, 276, 332
BsmAI GTCTC 2 cut(s) 20, 847
BsmBI CGTCTC 1 cut(s) 20
BsmI GAATGC 1 cut(s) 446
BsnI GGCC 3 cut(s) 79, 310, 742
BsoBI CYCGRG 1 cut(s) 727
Bsp1286I GDGCHC 2 cut(s) 48, 217
Bsp1407I TGTACA 1 cut(s) 244
Bsp143I GATC 4 cut(s) 550, 578, 632, 684
BspACI CCGC 7 cut(s) 32, 65, 102, 144, 182, 434, 716
BspANI GGCC 3 cut(s) 79, 310, 742
BspCNI CTCAG 1 cut(s) 631
BspLI GGNNCC 5 cut(s) 135, 453, 678, 699, 708
BspMAI CTGCAG 2 cut(s) 496, 775
BspPI GGATC 1 cut(s) 586
BspT107I GGYRCC 4 cut(s) 451, 676, 697, 706
BsrFI RCCGGY 1 cut(s) 116
BsrGI TGTACA 1 cut(s) 244
BsrI ACTGG 2 cut(s) 518, 743
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 326, 726
BssMI GATC 4 cut(s) 550, 578, 632, 684
BssNI GRCGYC 1 cut(s) 452
Bst2UI CCWGG 2 cut(s) 176, 327
Bst4CI ACNGT 6 cut(s) 12, 233, 395, 599, 824, 841
BstACI GRCGYC 1 cut(s) 452
BstAUI TGTACA 1 cut(s) 244
BstC8I GCNNGC 4 cut(s) 77, 114, 118, 122
BstDEI CTNAG 1 cut(s) 639
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 3 cut(s) 477, 699, 722
BstH2I RGCGCY 2 cut(s) 71, 455
BstHHI GCGC 3 cut(s) 56, 70, 454
BstKTI GATC 4 cut(s) 553, 581, 635, 687
BstMAI GTCTC 2 cut(s) 20, 847
BstMBI GATC 4 cut(s) 550, 578, 632, 684
BstMWI GCNNNNNNNGC 5 cut(s) 62, 76, 81, 171, 739
BstNI CCWGG 2 cut(s) 176, 327
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 2 cut(s) 174, 325
BstSFI CTRYAG 3 cut(s) 492, 519, 771
BstV1I GCAGC 3 cut(s) 38, 388, 506
BstV2I GAAGAC 1 cut(s) 366
BstX2I RGATCY 1 cut(s) 684
BstYI RGATCY 1 cut(s) 684
BsuRI GGCC 3 cut(s) 79, 310, 742
BtsCI GGATG 3 cut(s) 477, 699, 722
BtsI GCAGTG 1 cut(s) 780
BtsIMutI CAGTG 5 cut(s) 17, 511, 540, 780, 820
Cac8I GCNNGC 4 cut(s) 77, 114, 118, 122
CfoI GCGC 3 cut(s) 56, 70, 454
Cfr10I RCCGGY 1 cut(s) 116
Cfr13I GGNCC 3 cut(s) 78, 94, 308
CseI GACGC 1 cut(s) 393
Csp6I GTAC 4 cut(s) 245, 565, 707, 837
CviAII CATG 1 cut(s) 568
CviQI GTAC 4 cut(s) 245, 565, 707, 837
DdeI CTNAG 1 cut(s) 639
DinI GGCGCC 1 cut(s) 453
DpnI GATC 4 cut(s) 552, 580, 634, 686
DpnII GATC 4 cut(s) 550, 578, 632, 684
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EciI GGCGGA 2 cut(s) 47, 449
Ecl136II GAGCTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 217
Eco32I GATATC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 94
Eco53kI GAGCTC 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 727
Eco91I GGTNACC 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 215
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 174, 325
EcoRV GATATC 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 217
EgeI GGCGCC 1 cut(s) 453
EheI GGCGCC 1 cut(s) 453
Esp3I CGTCTC 1 cut(s) 20
FaeI CATG 1 cut(s) 571
FaiI YATR 5 cut(s) 249, 521, 569, 668, 736
FatI CATG 1 cut(s) 567
FauI CCCGC 1 cut(s) 723
Fnu4HI GCNGC 5 cut(s) 52, 66, 102, 402, 495
FokI GGATG 3 cut(s) 484, 706, 709
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 5 cut(s) 52, 66, 102, 402, 495
GlaI GCGC 3 cut(s) 55, 69, 453
GluI GCNGC 5 cut(s) 52, 66, 102, 402, 495
GsaI CCCAGC 3 cut(s) 369, 471, 501
GsuI CTGGAG 1 cut(s) 224
HaeII RGCGCY 2 cut(s) 71, 455
HaeIII GGCC 3 cut(s) 79, 310, 742
HapII CCGG 5 cut(s) 117, 270, 277, 294, 311
HgaI GACGC 1 cut(s) 393
HhaI GCGC 3 cut(s) 56, 70, 454
Hin1I GRCGYC 1 cut(s) 452
Hin1II CATG 1 cut(s) 571
Hin6I GCGC 3 cut(s) 54, 68, 452
HinP1I GCGC 3 cut(s) 54, 68, 452
HincII GTYRAC 1 cut(s) 827
HindII GTYRAC 1 cut(s) 827
HinfI GANTC 3 cut(s) 537, 617, 767
HpaII CCGG 5 cut(s) 117, 270, 277, 294, 311
HphI GGTGA 2 cut(s) 266, 365
Hpy166II GTNNAC 4 cut(s) 97, 323, 602, 827
Hpy188I TCNGA 7 cut(s) 391, 555, 616, 640, 756, 766, 802
Hpy188III TCNNGA 2 cut(s) 203, 785
Hpy8I GTNNAC 4 cut(s) 97, 323, 602, 827
Hpy99I CGWCG 5 cut(s) 62, 89, 409, 586, 855
HpyAV CCTTC 3 cut(s) 85, 580, 720
HpyCH4III ACNGT 6 cut(s) 12, 233, 395, 599, 824, 841
HpyCH4IV ACGT 4 cut(s) 18, 42, 789, 850
HpyCH4V TGCA 5 cut(s) 318, 444, 494, 666, 773
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 76, 81, 171, 739
HpyF3I CTNAG 1 cut(s) 639
HpySE526I ACGT 4 cut(s) 18, 42, 789, 850
Hsp92I GRCGYC 1 cut(s) 452
Hsp92II CATG 1 cut(s) 571
HspAI GCGC 3 cut(s) 54, 68, 452
KasI GGCGCC 1 cut(s) 451
KpnI GGTACC 1 cut(s) 710
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Kzo9I GATC 4 cut(s) 550, 578, 632, 684
LmnI GCTCC 1 cut(s) 646
Lsp1109I GCAGC 3 cut(s) 38, 388, 506
MaeII ACGT 4 cut(s) 18, 42, 789, 850
MaeIII GTNAC 2 cut(s) 14, 272
MalI GATC 4 cut(s) 552, 580, 634, 686
MboI GATC 4 cut(s) 550, 578, 632, 684
MboII GAAGA 3 cut(s) 16, 366, 369
MfeI CAATTG 1 cut(s) 428
MflI RGATCY 1 cut(s) 684
MhlI GDGCHC 2 cut(s) 48, 217
MluCI AATT 4 cut(s) 297, 428, 624, 860
Mly113I GGCGCC 1 cut(s) 452
MroNI GCCGGC 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 2 cut(s) 300, 629
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 5 cut(s) 117, 270, 277, 294, 311
MspR9I CCNGG 2 cut(s) 176, 327
MunI CAATTG 1 cut(s) 428
Mva1269I GAATGC 1 cut(s) 446
MvaI CCWGG 2 cut(s) 176, 327
MwoI GCNNNNNNNGC 5 cut(s) 62, 76, 81, 171, 739
NaeI GCCGGC 1 cut(s) 118
NarI GGCGCC 1 cut(s) 452
NdeII GATC 4 cut(s) 550, 578, 632, 684
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 1 cut(s) 571
NlaIV GGNNCC 5 cut(s) 135, 453, 678, 699, 708
NmuCI GTSAC 1 cut(s) 272
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 1 cut(s) 446
PdiI GCCGGC 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 3 cut(s) 537, 617, 767
PkrI GCNGC 5 cut(s) 53, 67, 103, 403, 496
PluTI GGCGCC 1 cut(s) 455
Psp124BI GAGCTC 1 cut(s) 217
Psp6I CCWGG 2 cut(s) 174, 325
PspEI GGTNACC 1 cut(s) 272
PspFI CCCAGC 3 cut(s) 365, 467, 497
PspGI CCWGG 2 cut(s) 174, 325
PspN4I GGNNCC 5 cut(s) 135, 453, 678, 699, 708
PspPI GGNCC 3 cut(s) 78, 94, 308
PstI CTGCAG 2 cut(s) 496, 775
PsuI RGATCY 1 cut(s) 684
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 4 cut(s) 246, 566, 708, 838
RsaNI GTAC 4 cut(s) 245, 565, 707, 837
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 2 cut(s) 300, 629
SatI GCNGC 5 cut(s) 52, 66, 102, 402, 495
Sau3AI GATC 4 cut(s) 550, 578, 632, 684
Sau96I GGNCC 3 cut(s) 78, 94, 308
ScrFI CCNGG 2 cut(s) 176, 327
SduI GDGCHC 2 cut(s) 48, 217
SfcI CTRYAG 3 cut(s) 492, 519, 771
SfoI GGCGCC 1 cut(s) 453
SinI GGWCC 1 cut(s) 94
Sse9I AATT 4 cut(s) 297, 428, 624, 860
SsiI CCGC 7 cut(s) 32, 65, 102, 144, 182, 434, 716
SspDI GGCGCC 1 cut(s) 451
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 2 cut(s) 174, 325
TaaI ACNGT 6 cut(s) 12, 233, 395, 599, 824, 841
TaiI ACGT 4 cut(s) 21, 45, 792, 853
TaqI TCGA 3 cut(s) 407, 549, 584
TasI AATT 4 cut(s) 297, 428, 624, 860
TatI WGTACW 1 cut(s) 244
TauI GCSGC 2 cut(s) 68, 104
TfiI GAWTC 3 cut(s) 537, 617, 767
Tru1I TTAA 2 cut(s) 300, 629
Tru9I TTAA 2 cut(s) 300, 629
TscAI CASTG 5 cut(s) 17, 518, 547, 780, 827
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 3 cut(s) 51, 401, 494
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 17, 609
TspRI CASTG 5 cut(s) 17, 518, 547, 780, 827
VpaK11BI GGWCC 1 cut(s) 94
XcmI CCANNNNNNNNNTGG 2 cut(s) 182, 687
XmnI GAANNNNTTC 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.