Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0015021

Physical Location & Seq

Genomic Coordinates Forward (+)

23342762 .. 23343631

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG205600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCTTTTGCTGGTGGTTCTGCAGCTGGGTCTGTTCCACAGTGGCCTATAGATGAGTTTCTGGGATTCACTGATTTCGATCAGAGCTTTGGGTACATGGATAATGGATCGTCTAAGGCTGACTGCGGTAAACTTGGGGCTTCTGATTCATCAATTTTAAGATCATCTGAGGAGGAGCAAGAGGGATACGAGTGCATAGGTCAGGTGCCAGAGATCTCTTGGATGGTGCCAGAGGTACCTTCCCCGCCTACATCCTCGGGGCTATACTGGCCTAAAACTTATCAGAACCCATCGGATTCTGCAGTGTTTGTTCCAGACGTTTGCTATTCAGAAATGGAAAATCCTCTTCACTGTCAACAGAATGGTACTGTCTCAAAACGTCGTAGGCAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000989 GO:0003674 GO:0008150 GO:0009889 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

131

Amino Acids

14.38

Weight (kDa)

4.29

Isoelectric Point (pI)

76.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10240
fragaria_vesca	FvH4_3g17750
malus_domestica	MD03G1247700.v1.1 MD11G1269800.v1.1
prunus_persica	Prupe.4G156600_v2.0.a1
pyrus_communis	pycom03g19640 pycom11g23830
rosa_chinensis	RchiOBHm_Chr5g0029541
rosa_laevigata	RLG00000033177
rosa_multiflora	Rmu_sc0000210.1_g000014
rosa_roxburghii	Rroxscaffold_1G00050400
rosa_samantha	Rh5AG206900 Rh5BG205600 Rh5CG227700 Rh5DG209300
rosa_wichuraiana	Rw5G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	235
AccB1I	GGYRCC	3 cut(s)	205, 226, 235
AciI	CCGC	2 cut(s)	126, 245
AclWI	GGATC	1 cut(s)	115
AfaI	GTAC	3 cut(s)	95, 237, 367
AluBI	AGCT	2 cut(s)	26, 87
AluI	AGCT	2 cut(s)	26, 87
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	1 cut(s)	115
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	2 cut(s)	44, 269
ApeKI	GCWGC	1 cut(s)	23
Asp718I	GGTACC	1 cut(s)	235
AvaI	CYCGRG	1 cut(s)	256
BanI	GGYRCC	3 cut(s)	205, 226, 235
BbvI	GCAGC	1 cut(s)	35
BccI	CCATC	2 cut(s)	217, 298
BciVI	GTATCC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	376
BfmI	CTRYAG	3 cut(s)	21, 48, 300
BfuI	GTATCC	1 cut(s)	179
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	256
BmiI	GGNNCC	3 cut(s)	207, 228, 237
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	272
Bse8I	GATNNNNATC	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	2 cut(s)	228, 251
BseJI	GATNNNNATC	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	2 cut(s)	185, 188
BseXI	GCAGC	1 cut(s)	35
BseYI	CCCAGC	1 cut(s)	26
BshFI	GGCC	2 cut(s)	46, 271
BshNI	GGYRCC	3 cut(s)	205, 226, 235
BsiHKCI	CYCGRG	1 cut(s)	256
BsmAI	GTCTC	1 cut(s)	376
BsnI	GGCC	2 cut(s)	46, 271
BsoBI	CYCGRG	1 cut(s)	256
Bsp143I	GATC	4 cut(s)	79, 107, 161, 213
BspACI	CCGC	2 cut(s)	126, 245
BspANI	GGCC	2 cut(s)	46, 271
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	3 cut(s)	207, 228, 237
BspMAI	CTGCAG	2 cut(s)	25, 304
BspPI	GGATC	1 cut(s)	115
BspT107I	GGYRCC	3 cut(s)	205, 226, 235
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	4 cut(s)	79, 107, 161, 213
Bst4CI	ACNGT	3 cut(s)	42, 353, 370
Bst6I	CTCTTC	1 cut(s)	351
BstDEI	CTNAG	2 cut(s)	114, 168
BstF5I	GGATG	2 cut(s)	228, 251
BstKTI	GATC	4 cut(s)	82, 110, 164, 216
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	4 cut(s)	79, 107, 161, 213
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstSFI	CTRYAG	3 cut(s)	21, 48, 300
BstV1I	GCAGC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	46, 271
BtsCI	GGATG	2 cut(s)	228, 251
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	4 cut(s)	47, 69, 309, 349
Csp6I	GTAC	3 cut(s)	94, 236, 366
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	7 cut(s)	26, 46, 87, 119, 140, 262, 271
CviKI_1	RGCY	7 cut(s)	26, 46, 87, 119, 140, 262, 271
CviQI	GTAC	3 cut(s)	94, 236, 366
DdeI	CTNAG	2 cut(s)	114, 168
DpnI	GATC	4 cut(s)	81, 109, 163, 215
DpnII	GATC	4 cut(s)	79, 107, 161, 213
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	256
FaeI	CATG	1 cut(s)	100
FaiI	YATR	4 cut(s)	50, 98, 197, 265
FatI	CATG	1 cut(s)	96
FauI	CCCGC	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	2 cut(s)	235, 238
Fsp4HI	GCNGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	24
GsaI	CCCAGC	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	46, 271
Hin1II	CATG	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	356
HindII	GTYRAC	1 cut(s)	356
HinfI	GANTC	3 cut(s)	66, 146, 296
Hpy166II	GTNNAC	2 cut(s)	131, 356
Hpy188I	TCNGA	6 cut(s)	84, 145, 169, 285, 295, 331
Hpy188III	TCNNGA	1 cut(s)	314
Hpy8I	GTNNAC	2 cut(s)	131, 356
Hpy99I	CGWCG	1 cut(s)	384
HpyAV	CCTTC	1 cut(s)	249
HpyCH4III	ACNGT	3 cut(s)	42, 353, 370
HpyCH4IV	ACGT	2 cut(s)	318, 379
HpyCH4V	TGCA	3 cut(s)	23, 195, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpyF3I	CTNAG	2 cut(s)	114, 168
HpySE526I	ACGT	2 cut(s)	318, 379
Hsp92II	CATG	1 cut(s)	100
KpnI	GGTACC	1 cut(s)	239
Kzo9I	GATC	4 cut(s)	79, 107, 161, 213
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	7 cut(s)	12, 47, 188, 222, 243, 253, 327
Lsp1109I	GCAGC	1 cut(s)	35
MaeII	ACGT	2 cut(s)	318, 379
MalI	GATC	4 cut(s)	81, 109, 163, 215
MboI	GATC	4 cut(s)	79, 107, 161, 213
MboII	GAAGA	1 cut(s)	338
MflI	RGATCY	1 cut(s)	213
MluCI	AATT	2 cut(s)	153, 389
MnlI	CCTC	6 cut(s)	163, 166, 175, 226, 265, 354
MseI	TTAA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	268
NdeII	GATC	4 cut(s)	79, 107, 161, 213
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	3 cut(s)	207, 228, 237
PfeI	GAWTC	3 cut(s)	66, 146, 296
PkrI	GCNGC	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	26
PspN4I	GGNNCC	3 cut(s)	207, 228, 237
PstI	CTGCAG	2 cut(s)	25, 304
PsuI	RGATCY	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	3 cut(s)	95, 237, 367
RsaNI	GTAC	3 cut(s)	94, 236, 366
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	4 cut(s)	79, 107, 161, 213
SetI	ASST	8 cut(s)	28, 89, 202, 207, 237, 241, 321, 382
SfcI	CTRYAG	3 cut(s)	21, 48, 300
Sse9I	AATT	2 cut(s)	153, 389
SsiI	CCGC	2 cut(s)	126, 245
TaaI	ACNGT	3 cut(s)	42, 353, 370
TaiI	ACGT	2 cut(s)	321, 382
TaqI	TCGA	1 cut(s)	78
TasI	AATT	2 cut(s)	153, 389
TfiI	GAWTC	3 cut(s)	66, 146, 296
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	4 cut(s)	47, 76, 309, 356
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	138
TspRI	CASTG	4 cut(s)	47, 76, 309, 356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.