Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0015021

Physical Location & Seq

Genomic Coordinates Forward (+)

20243856 .. 20245299

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g19640.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAAGATACAGTGCAACGTCTGCGAGGCAGCGGAGGCGAACGTCCTCTGCTGCGCCGACGAGGCGGCTCTCTGCTGGGCGTGCGACGAGAAGGTTCACAAAGCGAACAAGCTCGCGAGTAAGCACCAGAGGGTTCGTCTTTCCTCCTCCCACTTGCCCAAATGCGATATCTGCCAGGAGGCAGTTGGGTACTTTTTCTGCTTAGAAGATCGAGCTTTGCTATGTAGAAAATGTGATGTTGCCGTTCACACGGCTAATAGCTTCGTGTCAGCTCACCGGAGGTTTTTGCTTACCGGAATCAAGGTTGGGCCTGAGCCGGCTCAGCCGGATTTCGGCGACGGTGATGGGGTTGGTGCGTCTTCTTCTACTATGAAGTCACGTCCTGGGTCTGGTTCTGGCTCAGTGTCTAGATGTGAAACGCACGACTCGTTGCCGGTGGAGTGCAAGGCGGCGCTGCCCGGAGTTGCCGGGGGGATGTCGTTTACTGGGGGCTCTTCAGCTGGGACGGTTCCACAATGTTATATAGATGAGTTTCTTGGACTCTCTGATCTTGATCAGAGCTTTGGCTACATTGATAATGGATCTTCAAAGGCTGACTGCGGTAAACTTGGGGAATATGGCTCACCAGTTTTAAGATCGTCTGAGGAGGAACTGGACGATTATGAGTGCATAGGTGAGGTGCCGGAGGCCTCATGGATGGTACCACAGATACCTTCCCCACCTACAGCATCGGGACTATACTGGCCAAAAAGTCTTCAGAATCCGTCGGATTCTTCTACAATGTTTGTTCCAGACATCTGCCACTCACAAATGGAAAACCCTTTTTGTTCCCAACATAATGGTACTGTCTCAAAACGTCGTAGGCAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000989 GO:0003674 GO:0008150 GO:0009889 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

291

Amino Acids

31.12

Weight (kDa)

5.28

Isoelectric Point (pI)

55.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10240
fragaria_vesca	FvH4_3g17750
malus_domestica	MD03G1247700.v1.1 MD11G1269800.v1.1
prunus_persica	Prupe.4G156600_v2.0.a1
pyrus_communis	pycom03g19640 pycom11g23830
rosa_chinensis	RchiOBHm_Chr5g0029541
rosa_laevigata	RLG00000033177
rosa_multiflora	Rmu_sc0000210.1_g000014
rosa_roxburghii	Rroxscaffold_1G00050400
rosa_samantha	Rh5AG206900 Rh5BG205600 Rh5CG227700 Rh5DG209300
rosa_wichuraiana	Rw5G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	700
AccB1I	GGYRCC	2 cut(s)	679, 700
AccII	CGCG	1 cut(s)	116
AciI	CCGC	4 cut(s)	32, 65, 449, 600
AclWI	GGATC	1 cut(s)	589
AcoI	YGGCCR	1 cut(s)	743
AcuI	CTGAAG	2 cut(s)	480, 740
AfaI	GTAC	3 cut(s)	191, 702, 844
AfiI	CCNNNNNNNGG	2 cut(s)	332, 389
AgsI	TTSAA	1 cut(s)	588
AjiI	CACGTC	1 cut(s)	380
AjnI	CCWGG	2 cut(s)	174, 382
AluBI	AGCT	6 cut(s)	112, 215, 261, 272, 500, 561
AluI	AGCT	6 cut(s)	112, 215, 261, 272, 500, 561
Alw26I	GTCTC	1 cut(s)	853
AlwI	GGATC	1 cut(s)	589
AoxI	GGCC	3 cut(s)	308, 687, 743
ApeKI	GCWGC	3 cut(s)	29, 51, 454
Asp718I	GGTACC	1 cut(s)	700
AspLEI	GCGC	2 cut(s)	56, 454
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	2 cut(s)	459, 469
AsuHPI	GGTGA	4 cut(s)	266, 353, 615, 686
BalI	TGGCCA	1 cut(s)	745
BanI	GGYRCC	2 cut(s)	679, 700
BanII	GRGCYC	1 cut(s)	494
BbsI	GAAGAC	2 cut(s)	351, 746
BbvI	GCAGC	3 cut(s)	38, 41, 441
BccI	CCATC	2 cut(s)	338, 691
BceAI	ACGGC	2 cut(s)	227, 267
BciT130I	CCWGG	2 cut(s)	176, 384
BclI	TGATCA	1 cut(s)	553
BcnI	CCSGG	2 cut(s)	459, 469
BcoDI	GTCTC	1 cut(s)	853
BfaI	CTAG	2 cut(s)	408, 871
BfmI	CTRYAG	1 cut(s)	723
BfoI	RGCGCY	1 cut(s)	455
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	5 cut(s)	30, 52, 66, 450, 455
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	5 cut(s)	31, 53, 67, 451, 456
Bme1390I	CCNGG	4 cut(s)	176, 384, 459, 469
BmgBI	CACGTC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	3 cut(s)	510, 681, 702
BmrFI	CCNGG	4 cut(s)	176, 384, 459, 469
BmrI	ACTGGG	1 cut(s)	495
BmsI	GCATC	1 cut(s)	737
BmuI	ACTGGG	1 cut(s)	495
BpiI	GAAGAC	2 cut(s)	351, 746
Bpu10I	CCTNAGC	1 cut(s)	312
Bpu1102I	GCTNAGC	1 cut(s)	321
BpuMI	CCSGG	2 cut(s)	459, 469
BsaBI	GATNNNNATC	1 cut(s)	552
BsaJI	CCNNGG	2 cut(s)	383, 468
BsaWI	WCCGGW	2 cut(s)	276, 293
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 389
Bse118I	RCCGGY	2 cut(s)	316, 433
Bse1I	ACTGG	4 cut(s)	490, 626, 657, 746
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	2 cut(s)	176, 384
BseDI	CCNNGG	2 cut(s)	383, 468
BseGI	GGATG	2 cut(s)	480, 702
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	2 cut(s)	332, 389
BseMII	CTCAG	4 cut(s)	303, 335, 414, 633
BseNI	ACTGG	4 cut(s)	490, 626, 657, 746
BseRI	GAGGAG	2 cut(s)	136, 659
BseXI	GCAGC	3 cut(s)	38, 41, 441
BseYI	CCCAGC	2 cut(s)	75, 500
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	3 cut(s)	310, 689, 745
BshNI	GGYRCC	2 cut(s)	679, 700
BsiSI	CCGG	8 cut(s)	277, 294, 317, 326, 434, 459, 468, 683
BslFI	GGGAC	2 cut(s)	517, 747
BslI	CCNNNNNNNGG	2 cut(s)	332, 389
BsmAI	GTCTC	1 cut(s)	853
BsmFI	GGGAC	2 cut(s)	517, 747
BsnI	GGCC	3 cut(s)	310, 689, 745
Bsp1286I	GDGCHC	1 cut(s)	494
Bsp143I	GATC	5 cut(s)	208, 547, 553, 581, 635
Bsp1720I	GCTNAGC	1 cut(s)	321
Bsp68I	TCGCGA	1 cut(s)	116
BspACI	CCGC	4 cut(s)	32, 65, 449, 600
BspANI	GGCC	3 cut(s)	310, 689, 745
BspCNI	CTCAG	4 cut(s)	304, 334, 413, 634
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	3 cut(s)	510, 681, 702
BspPI	GGATC	1 cut(s)	589
BspQI	GCTCTTC	1 cut(s)	499
BspT107I	GGYRCC	2 cut(s)	679, 700
BsrFI	RCCGGY	2 cut(s)	316, 433
BsrI	ACTGG	4 cut(s)	490, 626, 657, 746
BssAI	RCCGGY	2 cut(s)	316, 433
BssECI	CCNNGG	2 cut(s)	383, 468
BssMI	GATC	5 cut(s)	208, 547, 553, 581, 635
Bst2UI	CCWGG	2 cut(s)	176, 384
Bst4CI	ACNGT	4 cut(s)	12, 341, 508, 847
Bst6I	CTCTTC	1 cut(s)	499
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	3 cut(s)	82, 114, 318
BstDEI	CTNAG	5 cut(s)	202, 312, 321, 400, 642
BstF5I	GGATG	2 cut(s)	480, 702
BstFNI	CGCG	1 cut(s)	116
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	2 cut(s)	56, 454
BstKTI	GATC	5 cut(s)	211, 550, 556, 584, 638
BstMAI	GTCTC	1 cut(s)	853
BstMBI	GATC	5 cut(s)	208, 547, 553, 581, 635
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 35, 62, 81, 171, 322
BstNI	CCWGG	2 cut(s)	176, 384
BstSCI	CCNGG	4 cut(s)	174, 382, 457, 467
BstSFI	CTRYAG	1 cut(s)	723
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	3 cut(s)	38, 41, 441
BstV2I	GAAGAC	2 cut(s)	351, 746
BstX2I	RGATCY	1 cut(s)	581
BstXI	CCANNNNNNTGG	1 cut(s)	839
BstYI	RGATCY	1 cut(s)	581
BsuRI	GGCC	3 cut(s)	310, 689, 745
BtrI	CACGTC	1 cut(s)	380
BtsCI	GGATG	2 cut(s)	480, 702
BtsIMutI	CAGTG	2 cut(s)	17, 408
BtuMI	TCGCGA	1 cut(s)	116
Cac8I	GCNNGC	3 cut(s)	82, 114, 318
CfoI	GCGC	2 cut(s)	56, 454
Cfr10I	RCCGGY	2 cut(s)	316, 433
Cfr13I	GGNCC	1 cut(s)	308
CseI	GACGC	1 cut(s)	345
Csp6I	GTAC	3 cut(s)	190, 701, 843
CviAII	CATG	1 cut(s)	693
CviQI	GTAC	3 cut(s)	190, 701, 843
DdeI	CTNAG	5 cut(s)	202, 312, 321, 400, 642
DpnI	GATC	5 cut(s)	210, 549, 555, 583, 637
DpnII	GATC	5 cut(s)	208, 547, 553, 581, 635
EaeI	YGGCCR	1 cut(s)	743
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
Eco147I	AGGCCT	1 cut(s)	689
Eco24I	GRGCYC	1 cut(s)	494
Eco32I	GATATC	1 cut(s)	169
Eco57I	CTGAAG	2 cut(s)	480, 740
EcoRII	CCWGG	2 cut(s)	174, 382
EcoRV	GATATC	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	494
FaeI	CATG	1 cut(s)	696
FaqI	GGGAC	2 cut(s)	517, 747
FatI	CATG	1 cut(s)	692
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	5 cut(s)	30, 52, 66, 450, 455
FokI	GGATG	2 cut(s)	487, 709
FriOI	GRGCYC	1 cut(s)	494
Fsp4HI	GCNGC	5 cut(s)	30, 52, 66, 450, 455
FspBI	CTAG	2 cut(s)	408, 871
GlaI	GCGC	2 cut(s)	55, 453
GluI	GCNGC	5 cut(s)	30, 52, 66, 450, 455
GsaI	CCCAGC	2 cut(s)	79, 504
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	3 cut(s)	310, 689, 745
HapII	CCGG	8 cut(s)	277, 294, 317, 326, 434, 459, 468, 683
HgaI	GACGC	1 cut(s)	345
HhaI	GCGC	2 cut(s)	56, 454
Hin1II	CATG	1 cut(s)	696
Hin6I	GCGC	2 cut(s)	54, 452
HinP1I	GCGC	2 cut(s)	54, 452
HinfI	GANTC	5 cut(s)	297, 425, 540, 760, 770
HpaII	CCGG	8 cut(s)	277, 294, 317, 326, 434, 459, 468, 683
HphI	GGTGA	4 cut(s)	266, 353, 615, 686
Hpy166II	GTNNAC	4 cut(s)	97, 247, 483, 605
Hpy188I	TCNGA	5 cut(s)	547, 558, 643, 759, 769
Hpy188III	TCNNGA	5 cut(s)	115, 408, 551, 732, 791
Hpy8I	GTNNAC	4 cut(s)	97, 247, 483, 605
Hpy99I	CGWCG	5 cut(s)	62, 89, 341, 769, 861
HpyAV	CCTTC	2 cut(s)	85, 723
HpyCH4III	ACNGT	4 cut(s)	12, 341, 508, 847
HpyCH4IV	ACGT	4 cut(s)	18, 42, 379, 856
HpyCH4V	TGCA	3 cut(s)	15, 444, 669
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 35, 62, 81, 171, 322
HpyF3I	CTNAG	5 cut(s)	202, 312, 321, 400, 642
HpySE526I	ACGT	4 cut(s)	18, 42, 379, 856
Hsp92II	CATG	1 cut(s)	696
HspAI	GCGC	2 cut(s)	54, 452
KpnI	GGTACC	1 cut(s)	704
KroI	GCCGGC	1 cut(s)	316
KroNI	GCCGGC	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	5 cut(s)	208, 547, 553, 581, 635
LguI	GCTCTTC	1 cut(s)	499
Lsp1109I	GCAGC	3 cut(s)	38, 41, 441
LweI	GCATC	1 cut(s)	737
MaeI	CTAG	2 cut(s)	408, 871
MaeII	ACGT	4 cut(s)	18, 42, 379, 856
MaeIII	GTNAC	1 cut(s)	375
MalI	GATC	5 cut(s)	210, 549, 555, 583, 637
MboI	GATC	5 cut(s)	208, 547, 553, 581, 635
MboII	GAAGA	8 cut(s)	16, 218, 351, 354, 486, 576, 746, 765
MflI	RGATCY	1 cut(s)	581
MhlI	GDGCHC	1 cut(s)	494
MlsI	TGGCCA	1 cut(s)	745
MluNI	TGGCCA	1 cut(s)	745
MlyI	GAGTC	2 cut(s)	419, 534
MmeI	TCCRAC	1 cut(s)	747
Mox20I	TGGCCA	1 cut(s)	745
MroNI	GCCGGC	1 cut(s)	316
MscI	TGGCCA	1 cut(s)	745
MseI	TTAA	1 cut(s)	632
Msp20I	TGGCCA	1 cut(s)	745
MspA1I	CMGCKG	2 cut(s)	32, 500
MspI	CCGG	8 cut(s)	277, 294, 317, 326, 434, 459, 468, 683
MspR9I	CCNGG	4 cut(s)	176, 384, 459, 469
MvaI	CCWGG	2 cut(s)	176, 384
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	6 cut(s)	21, 35, 62, 81, 171, 322
NaeI	GCCGGC	1 cut(s)	318
NciI	CCSGG	2 cut(s)	459, 469
NdeII	GATC	5 cut(s)	208, 547, 553, 581, 635
NgoMIV	GCCGGC	1 cut(s)	316
NlaIII	CATG	1 cut(s)	696
NlaIV	GGNNCC	3 cut(s)	510, 681, 702
NmuCI	GTSAC	1 cut(s)	375
NruI	TCGCGA	1 cut(s)	116
PceI	AGGCCT	1 cut(s)	689
PciSI	GCTCTTC	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	1 cut(s)	425
PdiI	GCCGGC	1 cut(s)	318
PfeI	GAWTC	3 cut(s)	297, 760, 770
PkrI	GCNGC	5 cut(s)	31, 53, 67, 451, 456
PleI	GAGTC	2 cut(s)	419, 534
PpsI	GAGTC	2 cut(s)	419, 534
Psp6I	CCWGG	2 cut(s)	174, 382
PspFI	CCCAGC	2 cut(s)	75, 500
PspGI	CCWGG	2 cut(s)	174, 382
PspN4I	GGNNCC	3 cut(s)	510, 681, 702
PspPI	GGNCC	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	581
PvuII	CAGCTG	1 cut(s)	500
RruI	TCGCGA	1 cut(s)	116
RsaI	GTAC	3 cut(s)	191, 702, 844
RsaNI	GTAC	3 cut(s)	190, 701, 843
SapI	GCTCTTC	1 cut(s)	499
SaqAI	TTAA	1 cut(s)	632
SatI	GCNGC	5 cut(s)	30, 52, 66, 450, 455
Sau3AI	GATC	5 cut(s)	208, 547, 553, 581, 635
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	2 cut(s)	419, 534
ScrFI	CCNGG	4 cut(s)	176, 384, 459, 469
SduI	GDGCHC	1 cut(s)	494
SfaNI	GCATC	1 cut(s)	737
SfcI	CTRYAG	1 cut(s)	723
SseBI	AGGCCT	1 cut(s)	689
SsiI	CCGC	4 cut(s)	32, 65, 449, 600
SspMI	CTAG	2 cut(s)	408, 871
StuI	AGGCCT	1 cut(s)	689
StyD4I	CCNGG	4 cut(s)	174, 382, 457, 467
TaaI	ACNGT	4 cut(s)	12, 341, 508, 847
TaiI	ACGT	4 cut(s)	21, 45, 382, 859
TaqI	TCGA	1 cut(s)	211
TauI	GCSGC	2 cut(s)	68, 452
TfiI	GAWTC	3 cut(s)	297, 760, 770
Tru1I	TTAA	1 cut(s)	632
Tru9I	TTAA	1 cut(s)	632
TscAI	CASTG	2 cut(s)	17, 408
TseFI	GTSAC	1 cut(s)	375
TseI	GCWGC	3 cut(s)	29, 51, 454
Tsp45I	GTSAC	1 cut(s)	375
TspDTI	ATGAA	2 cut(s)	17, 386
TspGWI	ACGGA	1 cut(s)	753
TspRI	CASTG	2 cut(s)	17, 408
XbaI	TCTAGA	1 cut(s)	407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XspI	CTAG	2 cut(s)	408, 871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.