Rh5AG206900

salt tolerance-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0015021
Physical Location & Seq
Forward (+)
24442893 .. 24444680
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG206900.1

Sequence Viewer

Length: 846 bp
ATGAAGATACAGTGTAACGTGTGCGAGACGGCGGAGGCGAACGTGCTCTGCTGCGCCGACGAGGCGGCGCTCTGCTGGCCCTGCGACGAGAAGGTCCACGCCGCCAACAAGCTCGCCAGCAAGCACCAGAGGGTTCCTCTCTCCGCCTCCCACATGCCCAAGTGCGATATCTGCCAGGAGGCGGTTGGGTATTTTTTCTGTTTGGAGGATAGAGCTCTGCTGTGTAGGAACTGTGATGTTGCTGTACATACTGCGAATAGTTTTGTTTCCGGTCACCGGAGGTTTTTGCTGACCGGAATTAAAGTTGGGCCGGAGTCCAGTCCACCTGGGTCTGGTGGTGGTGGTGGTGGGTCGTCTTCTTCTGTCAAACCGGACTCTGGGGCTGCGTCGAAATGTGAAGCAAACATTCAATTGGCGGAGGAATGCAAAGTGGCGCCGTCAAGTGTTGCTGGGATGTCTTTTGCTGGTGGTTCGGCAGCTGGGTCTGGTCCACAGTGGCCTATGGATGAGTTTCTGGGATTCACTGATTTCGATCAGAGCTTTGGGTACATGGATAATGGATCGTCTAAGGCTGACTGCGGTAAACTTGGGGCTTCTGATTCATCAATTTTAAGATCATCTGAGGAGCAAGAGGAATACGAGTGCATAGGTCAGGTGCCAGAGATCTCTTGGATGGTGCCAGAGGTACCTTCCCCGCCTACATCCTCGGGGCTATACTGGCCTAAAACTTATCAGAACCCATCGGATTCTGCAGTGTTTGTTCCAGACGTTTGCTATTCAGAAATGGAAAATCCTCTTCACTGTCAACAGAATGGTACTGTCTCAAAACGTCGTAGGCAATTCTAA

Protein Analysis

281

Amino Acids

29.98

Weight (kDa)

4.94

Isoelectric Point (pI)

60.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 52 - 93 2.1e-07 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10240
fragaria_vesca FvH4_3g17750
malus_domestica MD03G1247700.v1.1 MD11G1269800.v1.1
prunus_persica Prupe.4G156600_v2.0.a1
pyrus_communis pycom03g19640 pycom11g23830
rosa_chinensis RchiOBHm_Chr5g0029541
rosa_laevigata RLG00000033177
rosa_multiflora Rmu_sc0000210.1_g000014
rosa_roxburghii Rroxscaffold_1G00050400
rosa_samantha Rh5AG206900 Rh5BG205600 Rh5CG227700 Rh5DG209300
rosa_wichuraiana Rw5G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
Acc65I GGTACC 1 cut(s) 685
AccB1I GGYRCC 4 cut(s) 433, 655, 676, 685
AciI CCGC 8 cut(s) 32, 65, 102, 144, 182, 416, 579, 695
AclWI GGATC 1 cut(s) 568
AcyI GRCGYC 1 cut(s) 434
AfaI GTAC 4 cut(s) 246, 548, 687, 817
AfiI CCNNNNNNNGG 4 cut(s) 181, 276, 332, 377
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 1 cut(s) 410
AjnI CCWGG 2 cut(s) 174, 325
AluBI AGCT 4 cut(s) 112, 215, 479, 540
AluI AGCT 4 cut(s) 112, 215, 479, 540
Alw21I GWGCWC 2 cut(s) 48, 217
Alw26I GTCTC 2 cut(s) 20, 826
AlwI GGATC 1 cut(s) 568
Ama87I CYCGRG 1 cut(s) 706
AoxI GGCC 4 cut(s) 77, 308, 497, 719
ApeKI GCWGC 3 cut(s) 51, 383, 476
Asp718I GGTACC 1 cut(s) 685
AspLEI GCGC 3 cut(s) 56, 70, 436
AspS9I GGNCC 4 cut(s) 78, 94, 308, 488
AsuHPI GGTGA 1 cut(s) 266
AvaI CYCGRG 1 cut(s) 706
AvaII GGWCC 2 cut(s) 94, 488
BanI GGYRCC 4 cut(s) 433, 655, 676, 685
BanII GRGCYC 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 348
Bbv12I GWGCWC 2 cut(s) 48, 217
BbvI GCAGC 3 cut(s) 38, 370, 488
BccI CCATC 2 cut(s) 667, 748
BceAI ACGGC 2 cut(s) 45, 421
BciT130I CCWGG 2 cut(s) 176, 327
BcoDI GTCTC 2 cut(s) 20, 826
BfmI CTRYAG 1 cut(s) 750
BfoI RGCGCY 2 cut(s) 71, 437
BglI GCCNNNNNGGC 1 cut(s) 62
BglII AGATCT 1 cut(s) 663
BisI GCNGC 5 cut(s) 52, 66, 102, 384, 477
BlsI GCNGC 5 cut(s) 53, 67, 103, 385, 478
Bme1390I CCNGG 2 cut(s) 176, 327
Bme18I GGWCC 2 cut(s) 94, 488
BmeT110I CYCGRG 1 cut(s) 706
BmgT120I GGNCC 4 cut(s) 78, 94, 308, 488
BmiI GGNNCC 5 cut(s) 135, 435, 657, 678, 687
BmrFI CCNGG 2 cut(s) 176, 327
BpiI GAAGAC 1 cut(s) 348
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BsaBI GATNNNNATC 1 cut(s) 531
BsaHI GRCGYC 1 cut(s) 434
BsaJI CCNNGG 2 cut(s) 326, 705
BsaWI WCCGGW 4 cut(s) 269, 276, 293, 370
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 276, 332, 377
Bse1I ACTGG 2 cut(s) 318, 722
Bse8I GATNNNNATC 1 cut(s) 531
BseBI CCWGG 2 cut(s) 176, 327
BseDI CCNNGG 2 cut(s) 326, 705
BseGI GGATG 4 cut(s) 459, 511, 678, 701
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 4 cut(s) 181, 276, 332, 377
BseMII CTCAG 1 cut(s) 612
BseNI ACTGG 2 cut(s) 318, 722
BseRI GAGGAG 1 cut(s) 638
BseXI GCAGC 3 cut(s) 38, 370, 488
BseYI CCCAGC 2 cut(s) 449, 479
BshFI GGCC 4 cut(s) 79, 310, 499, 721
BshNI GGYRCC 4 cut(s) 433, 655, 676, 685
BsiHKAI GWGCWC 2 cut(s) 48, 217
BsiHKCI CYCGRG 1 cut(s) 706
BsiSI CCGG 5 cut(s) 270, 277, 294, 311, 371
BslI CCNNNNNNNGG 4 cut(s) 181, 276, 332, 377
BsmAI GTCTC 2 cut(s) 20, 826
BsmBI CGTCTC 1 cut(s) 20
BsmI GAATGC 1 cut(s) 428
BsnI GGCC 4 cut(s) 79, 310, 499, 721
BsoBI CYCGRG 1 cut(s) 706
Bsp1286I GDGCHC 2 cut(s) 48, 217
Bsp1407I TGTACA 1 cut(s) 244
Bsp143I GATC 4 cut(s) 532, 560, 614, 663
BspACI CCGC 8 cut(s) 32, 65, 102, 144, 182, 416, 579, 695
BspANI GGCC 4 cut(s) 79, 310, 499, 721
BspCNI CTCAG 1 cut(s) 613
BspLI GGNNCC 5 cut(s) 135, 435, 657, 678, 687
BspMAI CTGCAG 1 cut(s) 754
BspPI GGATC 1 cut(s) 568
BspT107I GGYRCC 4 cut(s) 433, 655, 676, 685
BsrGI TGTACA 1 cut(s) 244
BsrI ACTGG 2 cut(s) 318, 722
BssECI CCNNGG 2 cut(s) 326, 705
BssMI GATC 4 cut(s) 532, 560, 614, 663
BssNI GRCGYC 1 cut(s) 434
Bst2UI CCWGG 2 cut(s) 176, 327
Bst4CI ACNGT 5 cut(s) 12, 233, 495, 803, 820
Bst6I CTCTTC 1 cut(s) 801
BstACI GRCGYC 1 cut(s) 434
BstAUI TGTACA 1 cut(s) 244
BstC8I GCNNGC 4 cut(s) 77, 114, 118, 122
BstDEI CTNAG 2 cut(s) 567, 621
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 4 cut(s) 459, 511, 678, 701
BstH2I RGCGCY 2 cut(s) 71, 437
BstHHI GCGC 3 cut(s) 56, 70, 436
BstKTI GATC 4 cut(s) 535, 563, 617, 666
BstMAI GTCTC 2 cut(s) 20, 826
BstMBI GATC 4 cut(s) 532, 560, 614, 663
BstMWI GCNNNNNNNGC 5 cut(s) 62, 76, 81, 171, 718
BstNI CCWGG 2 cut(s) 176, 327
BstNSI RCATGY 1 cut(s) 157
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 2 cut(s) 174, 325
BstSFI CTRYAG 1 cut(s) 750
BstV1I GCAGC 3 cut(s) 38, 370, 488
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 663
BstYI RGATCY 1 cut(s) 663
BsuRI GGCC 4 cut(s) 79, 310, 499, 721
BtsCI GGATG 4 cut(s) 459, 511, 678, 701
BtsI GCAGTG 1 cut(s) 759
BtsIMutI CAGTG 5 cut(s) 17, 500, 522, 759, 799
Cac8I GCNNGC 4 cut(s) 77, 114, 118, 122
CfoI GCGC 3 cut(s) 56, 70, 436
Cfr13I GGNCC 4 cut(s) 78, 94, 308, 488
CseI GACGC 1 cut(s) 375
Csp6I GTAC 4 cut(s) 245, 547, 686, 816
CviAII CATG 2 cut(s) 154, 550
CviQI GTAC 4 cut(s) 245, 547, 686, 816
DdeI CTNAG 2 cut(s) 567, 621
DinI GGCGCC 1 cut(s) 435
DpnI GATC 4 cut(s) 534, 562, 616, 665
DpnII GATC 4 cut(s) 532, 560, 614, 663
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 801
EarI CTCTTC 1 cut(s) 801
EciI GGCGGA 3 cut(s) 47, 133, 431
Ecl136II GAGCTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 217
Eco32I GATATC 1 cut(s) 169
Eco47I GGWCC 2 cut(s) 94, 488
Eco53kI GAGCTC 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 706
Eco91I GGTNACC 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 215
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 174, 325
EcoRV GATATC 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 217
EgeI GGCGCC 1 cut(s) 435
EheI GGCGCC 1 cut(s) 435
Esp3I CGTCTC 1 cut(s) 20
FaeI CATG 2 cut(s) 157, 553
FaiI YATR 6 cut(s) 155, 249, 503, 551, 647, 715
FatI CATG 2 cut(s) 153, 549
FauI CCCGC 1 cut(s) 702
Fnu4HI GCNGC 5 cut(s) 52, 66, 102, 384, 477
FokI GGATG 4 cut(s) 466, 518, 685, 688
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 5 cut(s) 52, 66, 102, 384, 477
GlaI GCGC 3 cut(s) 55, 69, 435
GluI GCNGC 5 cut(s) 52, 66, 102, 384, 477
GsaI CCCAGC 2 cut(s) 453, 483
HaeII RGCGCY 2 cut(s) 71, 437
HaeIII GGCC 4 cut(s) 79, 310, 499, 721
HapII CCGG 5 cut(s) 270, 277, 294, 311, 371
HgaI GACGC 1 cut(s) 375
HhaI GCGC 3 cut(s) 56, 70, 436
Hin1I GRCGYC 1 cut(s) 434
Hin1II CATG 2 cut(s) 157, 553
Hin6I GCGC 3 cut(s) 54, 68, 434
HinP1I GCGC 3 cut(s) 54, 68, 434
HincII GTYRAC 1 cut(s) 806
HindII GTYRAC 1 cut(s) 806
HinfI GANTC 5 cut(s) 314, 374, 519, 599, 746
HpaII CCGG 5 cut(s) 270, 277, 294, 311, 371
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 5 cut(s) 97, 323, 491, 584, 806
Hpy188I TCNGA 6 cut(s) 537, 598, 622, 735, 745, 781
Hpy188III TCNNGA 1 cut(s) 764
Hpy8I GTNNAC 5 cut(s) 97, 323, 491, 584, 806
Hpy99I CGWCG 4 cut(s) 62, 89, 391, 834
HpyAV CCTTC 2 cut(s) 85, 699
HpyCH4III ACNGT 5 cut(s) 12, 233, 495, 803, 820
HpyCH4IV ACGT 4 cut(s) 18, 42, 768, 829
HpyCH4V TGCA 3 cut(s) 426, 645, 752
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 76, 81, 171, 718
HpyF3I CTNAG 2 cut(s) 567, 621
HpySE526I ACGT 4 cut(s) 18, 42, 768, 829
Hsp92I GRCGYC 1 cut(s) 434
Hsp92II CATG 2 cut(s) 157, 553
HspAI GCGC 3 cut(s) 54, 68, 434
KasI GGCGCC 1 cut(s) 433
KpnI GGTACC 1 cut(s) 689
Kzo9I GATC 4 cut(s) 532, 560, 614, 663
LmnI GCTCC 1 cut(s) 625
Lsp1109I GCAGC 3 cut(s) 38, 370, 488
MaeII ACGT 4 cut(s) 18, 42, 768, 829
MaeIII GTNAC 2 cut(s) 14, 272
MalI GATC 4 cut(s) 534, 562, 616, 665
MboI GATC 4 cut(s) 532, 560, 614, 663
MboII GAAGA 4 cut(s) 16, 348, 351, 788
MfeI CAATTG 1 cut(s) 410
MflI RGATCY 1 cut(s) 663
MhlI GDGCHC 2 cut(s) 48, 217
MluCI AATT 4 cut(s) 297, 410, 606, 839
Mly113I GGCGCC 1 cut(s) 434
MlyI GAGTC 2 cut(s) 323, 368
MseI TTAA 2 cut(s) 300, 611
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 5 cut(s) 270, 277, 294, 311, 371
MspR9I CCNGG 2 cut(s) 176, 327
MunI CAATTG 1 cut(s) 410
Mva1269I GAATGC 1 cut(s) 428
MvaI CCWGG 2 cut(s) 176, 327
MwoI GCNNNNNNNGC 5 cut(s) 62, 76, 81, 171, 718
NarI GGCGCC 1 cut(s) 434
NdeII GATC 4 cut(s) 532, 560, 614, 663
NlaIII CATG 2 cut(s) 157, 553
NlaIV GGNNCC 5 cut(s) 135, 435, 657, 678, 687
NmuCI GTSAC 1 cut(s) 272
NspI RCATGY 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 1 cut(s) 428
PfeI GAWTC 3 cut(s) 519, 599, 746
PkrI GCNGC 5 cut(s) 53, 67, 103, 385, 478
PleI GAGTC 2 cut(s) 322, 368
PluTI GGCGCC 1 cut(s) 437
PpsI GAGTC 2 cut(s) 322, 368
Psp124BI GAGCTC 1 cut(s) 217
Psp6I CCWGG 2 cut(s) 174, 325
PspEI GGTNACC 1 cut(s) 272
PspFI CCCAGC 2 cut(s) 449, 479
PspGI CCWGG 2 cut(s) 174, 325
PspN4I GGNNCC 5 cut(s) 135, 435, 657, 678, 687
PspPI GGNCC 4 cut(s) 78, 94, 308, 488
PstI CTGCAG 1 cut(s) 754
PsuI RGATCY 1 cut(s) 663
PvuII CAGCTG 1 cut(s) 479
RsaI GTAC 4 cut(s) 246, 548, 687, 817
RsaNI GTAC 4 cut(s) 245, 547, 686, 816
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 2 cut(s) 300, 611
SatI GCNGC 5 cut(s) 52, 66, 102, 384, 477
Sau3AI GATC 4 cut(s) 532, 560, 614, 663
Sau96I GGNCC 4 cut(s) 78, 94, 308, 488
SchI GAGTC 2 cut(s) 323, 368
ScrFI CCNGG 2 cut(s) 176, 327
SduI GDGCHC 2 cut(s) 48, 217
SfcI CTRYAG 1 cut(s) 750
SfoI GGCGCC 1 cut(s) 435
SinI GGWCC 2 cut(s) 94, 488
Sse9I AATT 4 cut(s) 297, 410, 606, 839
SsiI CCGC 8 cut(s) 32, 65, 102, 144, 182, 416, 579, 695
SspDI GGCGCC 1 cut(s) 433
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 2 cut(s) 174, 325
TaaI ACNGT 5 cut(s) 12, 233, 495, 803, 820
TaiI ACGT 4 cut(s) 21, 45, 771, 832
TaqI TCGA 2 cut(s) 389, 531
TasI AATT 4 cut(s) 297, 410, 606, 839
TatI WGTACW 1 cut(s) 244
TauI GCSGC 2 cut(s) 68, 104
TfiI GAWTC 3 cut(s) 519, 599, 746
Tru1I TTAA 2 cut(s) 300, 611
Tru9I TTAA 2 cut(s) 300, 611
TscAI CASTG 5 cut(s) 17, 500, 529, 759, 806
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 3 cut(s) 51, 383, 476
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 17, 591
TspRI CASTG 5 cut(s) 17, 500, 529, 759, 806
VpaK11BI GGWCC 2 cut(s) 94, 488
XceI RCATGY 1 cut(s) 157
XcmI CCANNNNNNNNNTGG 2 cut(s) 182, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.