RchiOBHm_Chr5g0029541

salt tolerance-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015021
Physical Location & Seq
Forward (+)
23171881 .. 23175537
3657 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30892

Sequence Viewer

Length: 858 bp
ATGAAGATACAGTGTAACGTGTGCGAGACGGCGGAGGCGAACGTGCTCTGCTGCGCCGACGAGGCGGCGCTCTGCTGGGCCTGCGACGAGAAGGTCCACGCCGCCAACAAGCTCGCCAGCAAGCACCAGAGGGTTCCTCTCTCCGCCTCCCACATGCCCAAGTGCGATATCTGCCAGGAGGGGGTTGGGTATTTTTTCTGTTTGGAGGATAGAGCTCTGCTGTGTAGGAACTGTGATGTTGCTGTACATACTGCGAATAGTTTTGTTTCCGGTCACCGGAGGTTTTTGCTGACCGGAATTAAAGTTGGGCCGGAGTCCAGTCCACCTGGGTCTGGTGGTGGTGGTGATGGTGTTGCTGGGTCGTCTTCTTCTGTCAAACCGGACCCTGGCGCTGCGAAGAAATGTGAAGCAAACATTCAATTGGCGGAGGAATGCAAAGTGGCGCCGTCGAGTGTTGCTGGGATGTCTTTTGCTGGTGGTTCTGCAGCTGGGTCTGTTCCACAGTGGCCTATAGATGAGTTTCTGGGATTCACTGATTTCGATCAGAGCTTTGGGTACATGGATAATGGATCGTCTAAGGCTGACTGCGGTAAACTTGGGGCTTCTGATTCATCAATTTTAAGATCATCTGAGGAGGAGCAAGAGGAATACGAGTGCATAGGTCAGGTGCCAGAGATCTCTTGGATGGTGCCAGAGGTACCTTCCCCGCCTACATCCTCGGGGCTATACTGGCCTAAAACTTATCAGAACCCATCGGATTCTGCAGTGTTTGTTCCAGACGTTTGCTATTCAGAAATGGAAAATCCTCTTCACTGTCAACAGAATGGTACTTTCTCAAAACGTCGTAGGCAATTCTAA

Protein Analysis

285

Amino Acids

30.47

Weight (kDa)

4.89

Isoelectric Point (pI)

61.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 52 - 93 8.3e-07 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10240
fragaria_vesca FvH4_3g17750
malus_domestica MD03G1247700.v1.1 MD11G1269800.v1.1
prunus_persica Prupe.4G156600_v2.0.a1
pyrus_communis pycom03g19640 pycom11g23830
rosa_chinensis RchiOBHm_Chr5g0029541
rosa_laevigata RLG00000033177
rosa_multiflora Rmu_sc0000210.1_g000014
rosa_roxburghii Rroxscaffold_1G00050400
rosa_samantha Rh5AG206900 Rh5BG205600 Rh5CG227700 Rh5DG209300
rosa_wichuraiana Rw5G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
Acc65I GGTACC 1 cut(s) 697
AccB1I GGYRCC 4 cut(s) 442, 667, 688, 697
AciI CCGC 7 cut(s) 32, 65, 102, 144, 425, 588, 707
AclWI GGATC 1 cut(s) 577
AcyI GRCGYC 1 cut(s) 443
AfaI GTAC 4 cut(s) 246, 557, 699, 829
AfiI CCNNNNNNNGG 4 cut(s) 181, 276, 332, 386
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 1 cut(s) 419
AjnI CCWGG 3 cut(s) 174, 325, 385
AluBI AGCT 4 cut(s) 112, 215, 488, 549
AluI AGCT 4 cut(s) 112, 215, 488, 549
Alw21I GWGCWC 2 cut(s) 48, 217
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 1 cut(s) 577
Ama87I CYCGRG 1 cut(s) 718
AoxI GGCC 4 cut(s) 78, 308, 506, 731
ApeKI GCWGC 3 cut(s) 51, 392, 485
Asp718I GGTACC 1 cut(s) 697
AspLEI GCGC 4 cut(s) 56, 70, 392, 445
AspS9I GGNCC 4 cut(s) 78, 94, 308, 382
AsuHPI GGTGA 2 cut(s) 266, 356
AvaI CYCGRG 1 cut(s) 718
AvaII GGWCC 2 cut(s) 94, 382
BanI GGYRCC 4 cut(s) 442, 667, 688, 697
BanII GRGCYC 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 357
Bbv12I GWGCWC 2 cut(s) 48, 217
BbvI GCAGC 3 cut(s) 38, 379, 497
BccI CCATC 3 cut(s) 341, 679, 760
BceAI ACGGC 2 cut(s) 45, 430
BciT130I CCWGG 3 cut(s) 176, 327, 387
BcoDI GTCTC 1 cut(s) 20
BfmI CTRYAG 3 cut(s) 483, 510, 762
BfoI RGCGCY 3 cut(s) 71, 393, 446
BglI GCCNNNNNGGC 1 cut(s) 62
BglII AGATCT 1 cut(s) 675
BisI GCNGC 5 cut(s) 52, 66, 102, 393, 486
BlsI GCNGC 5 cut(s) 53, 67, 103, 394, 487
Bme1390I CCNGG 3 cut(s) 176, 327, 387
Bme18I GGWCC 2 cut(s) 94, 382
BmeT110I CYCGRG 1 cut(s) 718
BmgT120I GGNCC 4 cut(s) 78, 94, 308, 382
BmiI GGNNCC 6 cut(s) 135, 384, 444, 669, 690, 699
BmrFI CCNGG 3 cut(s) 176, 327, 387
BpiI GAAGAC 1 cut(s) 357
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BsaBI GATNNNNATC 1 cut(s) 540
BsaHI GRCGYC 1 cut(s) 443
BsaJI CCNNGG 3 cut(s) 326, 385, 717
BsaWI WCCGGW 4 cut(s) 269, 276, 293, 379
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 276, 332, 386
Bse1I ACTGG 2 cut(s) 318, 734
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 3 cut(s) 176, 327, 387
BseDI CCNNGG 3 cut(s) 326, 385, 717
BseGI GGATG 3 cut(s) 468, 690, 713
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 4 cut(s) 181, 276, 332, 386
BseMII CTCAG 1 cut(s) 621
BseNI ACTGG 2 cut(s) 318, 734
BseRI GAGGAG 2 cut(s) 647, 650
BseXI GCAGC 3 cut(s) 38, 379, 497
BseYI CCCAGC 4 cut(s) 75, 356, 458, 488
BshFI GGCC 4 cut(s) 80, 310, 508, 733
BshNI GGYRCC 4 cut(s) 442, 667, 688, 697
BsiHKAI GWGCWC 2 cut(s) 48, 217
BsiHKCI CYCGRG 1 cut(s) 718
BsiSI CCGG 5 cut(s) 270, 277, 294, 311, 380
BslI CCNNNNNNNGG 4 cut(s) 181, 276, 332, 386
BsmAI GTCTC 1 cut(s) 20
BsmBI CGTCTC 1 cut(s) 20
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 4 cut(s) 80, 310, 508, 733
BsoBI CYCGRG 1 cut(s) 718
Bsp1286I GDGCHC 2 cut(s) 48, 217
Bsp1407I TGTACA 1 cut(s) 244
Bsp143I GATC 4 cut(s) 541, 569, 623, 675
BspACI CCGC 7 cut(s) 32, 65, 102, 144, 425, 588, 707
BspANI GGCC 4 cut(s) 80, 310, 508, 733
BspCNI CTCAG 1 cut(s) 622
BspLI GGNNCC 6 cut(s) 135, 384, 444, 669, 690, 699
BspMAI CTGCAG 2 cut(s) 487, 766
BspPI GGATC 1 cut(s) 577
BspT107I GGYRCC 4 cut(s) 442, 667, 688, 697
BsrGI TGTACA 1 cut(s) 244
BsrI ACTGG 2 cut(s) 318, 734
BssECI CCNNGG 3 cut(s) 326, 385, 717
BssMI GATC 4 cut(s) 541, 569, 623, 675
BssNI GRCGYC 1 cut(s) 443
Bst2UI CCWGG 3 cut(s) 176, 327, 387
Bst4CI ACNGT 4 cut(s) 12, 233, 504, 815
Bst6I CTCTTC 1 cut(s) 813
BstACI GRCGYC 1 cut(s) 443
BstAUI TGTACA 1 cut(s) 244
BstC8I GCNNGC 4 cut(s) 82, 114, 118, 122
BstDEI CTNAG 2 cut(s) 576, 630
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 3 cut(s) 468, 690, 713
BstH2I RGCGCY 3 cut(s) 71, 393, 446
BstHHI GCGC 4 cut(s) 56, 70, 392, 445
BstKTI GATC 4 cut(s) 544, 572, 626, 678
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 4 cut(s) 541, 569, 623, 675
BstMWI GCNNNNNNNGC 4 cut(s) 62, 81, 171, 730
BstNI CCWGG 3 cut(s) 176, 327, 387
BstNSI RCATGY 1 cut(s) 157
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 3 cut(s) 174, 325, 385
BstSFI CTRYAG 3 cut(s) 483, 510, 762
BstV1I GCAGC 3 cut(s) 38, 379, 497
BstV2I GAAGAC 1 cut(s) 357
BstX2I RGATCY 1 cut(s) 675
BstYI RGATCY 1 cut(s) 675
BsuRI GGCC 4 cut(s) 80, 310, 508, 733
BtsCI GGATG 3 cut(s) 468, 690, 713
BtsI GCAGTG 1 cut(s) 771
BtsIMutI CAGTG 5 cut(s) 17, 509, 531, 771, 811
Cac8I GCNNGC 4 cut(s) 82, 114, 118, 122
CfoI GCGC 4 cut(s) 56, 70, 392, 445
Cfr13I GGNCC 4 cut(s) 78, 94, 308, 382
Csp6I GTAC 4 cut(s) 245, 556, 698, 828
CviAII CATG 2 cut(s) 154, 559
CviQI GTAC 4 cut(s) 245, 556, 698, 828
DdeI CTNAG 2 cut(s) 576, 630
DinI GGCGCC 1 cut(s) 444
DpnI GATC 4 cut(s) 543, 571, 625, 677
DpnII GATC 4 cut(s) 541, 569, 623, 675
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 813
EarI CTCTTC 1 cut(s) 813
EciI GGCGGA 3 cut(s) 47, 133, 440
Ecl136II GAGCTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 217
Eco32I GATATC 1 cut(s) 169
Eco47I GGWCC 2 cut(s) 94, 382
Eco53kI GAGCTC 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 718
Eco91I GGTNACC 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 215
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 3 cut(s) 174, 325, 385
EcoRV GATATC 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 217
EgeI GGCGCC 1 cut(s) 444
EheI GGCGCC 1 cut(s) 444
Esp3I CGTCTC 1 cut(s) 20
FaeI CATG 2 cut(s) 157, 562
FaiI YATR 6 cut(s) 155, 249, 512, 560, 659, 727
FatI CATG 2 cut(s) 153, 558
FauI CCCGC 1 cut(s) 714
Fnu4HI GCNGC 5 cut(s) 52, 66, 102, 393, 486
FokI GGATG 3 cut(s) 475, 697, 700
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 5 cut(s) 52, 66, 102, 393, 486
GlaI GCGC 4 cut(s) 55, 69, 391, 444
GluI GCNGC 5 cut(s) 52, 66, 102, 393, 486
GsaI CCCAGC 4 cut(s) 79, 360, 462, 492
HaeII RGCGCY 3 cut(s) 71, 393, 446
HaeIII GGCC 4 cut(s) 80, 310, 508, 733
HapII CCGG 5 cut(s) 270, 277, 294, 311, 380
HhaI GCGC 4 cut(s) 56, 70, 392, 445
Hin1I GRCGYC 1 cut(s) 443
Hin1II CATG 2 cut(s) 157, 562
Hin6I GCGC 4 cut(s) 54, 68, 390, 443
HinP1I GCGC 4 cut(s) 54, 68, 390, 443
HincII GTYRAC 1 cut(s) 818
HindII GTYRAC 1 cut(s) 818
HinfI GANTC 4 cut(s) 314, 528, 608, 758
HpaII CCGG 5 cut(s) 270, 277, 294, 311, 380
HphI GGTGA 2 cut(s) 266, 356
Hpy166II GTNNAC 4 cut(s) 97, 323, 593, 818
Hpy188I TCNGA 6 cut(s) 546, 607, 631, 747, 757, 793
Hpy188III TCNNGA 1 cut(s) 776
Hpy8I GTNNAC 4 cut(s) 97, 323, 593, 818
Hpy99I CGWCG 4 cut(s) 62, 89, 451, 846
HpyAV CCTTC 2 cut(s) 85, 711
HpyCH4III ACNGT 4 cut(s) 12, 233, 504, 815
HpyCH4IV ACGT 4 cut(s) 18, 42, 780, 841
HpyCH4V TGCA 4 cut(s) 435, 485, 657, 764
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 81, 171, 730
HpyF3I CTNAG 2 cut(s) 576, 630
HpySE526I ACGT 4 cut(s) 18, 42, 780, 841
Hsp92I GRCGYC 1 cut(s) 443
Hsp92II CATG 2 cut(s) 157, 562
HspAI GCGC 4 cut(s) 54, 68, 390, 443
KasI GGCGCC 1 cut(s) 442
KpnI GGTACC 1 cut(s) 701
Kzo9I GATC 4 cut(s) 541, 569, 623, 675
LmnI GCTCC 1 cut(s) 637
Lsp1109I GCAGC 3 cut(s) 38, 379, 497
MaeII ACGT 4 cut(s) 18, 42, 780, 841
MaeIII GTNAC 2 cut(s) 14, 272
MalI GATC 4 cut(s) 543, 571, 625, 677
MboI GATC 4 cut(s) 541, 569, 623, 675
MboII GAAGA 5 cut(s) 16, 357, 360, 409, 800
MfeI CAATTG 1 cut(s) 419
MflI RGATCY 1 cut(s) 675
MhlI GDGCHC 2 cut(s) 48, 217
MluCI AATT 4 cut(s) 297, 419, 615, 851
Mly113I GGCGCC 1 cut(s) 443
MlyI GAGTC 1 cut(s) 323
MseI TTAA 2 cut(s) 300, 620
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 5 cut(s) 270, 277, 294, 311, 380
MspR9I CCNGG 3 cut(s) 176, 327, 387
MunI CAATTG 1 cut(s) 419
Mva1269I GAATGC 1 cut(s) 437
MvaI CCWGG 3 cut(s) 176, 327, 387
MwoI GCNNNNNNNGC 4 cut(s) 62, 81, 171, 730
NarI GGCGCC 1 cut(s) 443
NdeII GATC 4 cut(s) 541, 569, 623, 675
NlaIII CATG 2 cut(s) 157, 562
NlaIV GGNNCC 6 cut(s) 135, 384, 444, 669, 690, 699
NmuCI GTSAC 1 cut(s) 272
NspI RCATGY 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 1 cut(s) 437
PfeI GAWTC 3 cut(s) 528, 608, 758
PkrI GCNGC 5 cut(s) 53, 67, 103, 394, 487
PleI GAGTC 1 cut(s) 322
PluTI GGCGCC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 322
Psp124BI GAGCTC 1 cut(s) 217
Psp6I CCWGG 3 cut(s) 174, 325, 385
PspEI GGTNACC 1 cut(s) 272
PspFI CCCAGC 4 cut(s) 75, 356, 458, 488
PspGI CCWGG 3 cut(s) 174, 325, 385
PspN4I GGNNCC 6 cut(s) 135, 384, 444, 669, 690, 699
PspPI GGNCC 4 cut(s) 78, 94, 308, 382
PstI CTGCAG 2 cut(s) 487, 766
PsuI RGATCY 1 cut(s) 675
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 4 cut(s) 246, 557, 699, 829
RsaNI GTAC 4 cut(s) 245, 556, 698, 828
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 2 cut(s) 300, 620
SatI GCNGC 5 cut(s) 52, 66, 102, 393, 486
Sau3AI GATC 4 cut(s) 541, 569, 623, 675
Sau96I GGNCC 4 cut(s) 78, 94, 308, 382
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 3 cut(s) 176, 327, 387
SduI GDGCHC 2 cut(s) 48, 217
SfcI CTRYAG 3 cut(s) 483, 510, 762
SfoI GGCGCC 1 cut(s) 444
SinI GGWCC 2 cut(s) 94, 382
Sse9I AATT 4 cut(s) 297, 419, 615, 851
SsiI CCGC 7 cut(s) 32, 65, 102, 144, 425, 588, 707
SspDI GGCGCC 1 cut(s) 442
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 3 cut(s) 174, 325, 385
TaaI ACNGT 4 cut(s) 12, 233, 504, 815
TaiI ACGT 4 cut(s) 21, 45, 783, 844
TaqI TCGA 2 cut(s) 449, 540
TasI AATT 4 cut(s) 297, 419, 615, 851
TatI WGTACW 1 cut(s) 244
TauI GCSGC 2 cut(s) 68, 104
TfiI GAWTC 3 cut(s) 528, 608, 758
Tru1I TTAA 2 cut(s) 300, 620
Tru9I TTAA 2 cut(s) 300, 620
TscAI CASTG 5 cut(s) 17, 509, 538, 771, 818
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 3 cut(s) 51, 392, 485
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 17, 600
TspRI CASTG 5 cut(s) 17, 509, 538, 771, 818
VpaK11BI GGWCC 2 cut(s) 94, 382
XceI RCATGY 1 cut(s) 157
XcmI CCANNNNNNNNNTGG 2 cut(s) 182, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.