FvH4_3g17750

salt tolerance-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015021
Physical Location & Seq
Forward (+)
11299422 .. 11301298
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g17750.t1

Sequence Viewer

Length: 864 bp
ATGAAGATACAGTGTAACGTGTGCGAGGCGGCGGAGGCCACCGTGCTCTGCTGCGCCGACGAGGCGGCGCTGTGCTGGGCCTGCGACGAGAAAGTCCACGCCGCCAACAAGCTCGCCAGCAAGCACCAGAGGGTTCCTCTCTCCGCTTCTCATTTGCCCAAGTGCGATATTTGCCAGGAGGCGGTTGGGTATTTCTTCTGCTTGGAGGATAGGGCTTTGCTATGTAGGAAGTGCGATGTTGCGATACATACTGTGAATAGCTTTGTTTCCGGTCACCGGAGGTTTTTGCTGACCGGAATTAAGGTTGGGCTGGAGCCCAATCCTCCGGGTAGGTCTGGTCCTGGTGGCGGTGTTGCAGGGTCGTCTTCGTCGGTGAAATCGGAGTCTGGGGCCGTGGCGAAATGTGAGGGGAATAATCAGTTGGCTGAGGAATGCAAGGTGGCGCCGGAGAGTGTGGCCGGGATGGGTTTTTCTGGGGGCTCTGGAGCTGGAGCTGGGTCTGTTCCGCAGTGGCCGATGGAGGAGTTTCTGCGATTCGCTGATTTCGATCAGAGCTTTGGATACATGGATAATGGATCGTCTAAGGCTGACTGCGGTAAACTTGGGGACTCTGATTCATCAGTTTTAAGATCACCTGAGGAGGAACTGGAGGATTACGAGTGCATAGGTCAGGTGCCAGAGCTCTCTTGGATGGTGCCACAGGTACCTTCCCCACCTACATCCTCAGGGCTATACTGGCCTAAAACTTATCAGAACCCATTGGATTCTGCGGTGTTTGTTCCAGACGTTAACTACTCAGATATGCAAAATTCTCTTCACTATCAACAGAATGGTACTGTCTCAAAACGTCGTAGGCAACTATAA

Protein Analysis

288

Amino Acids

30.81

Weight (kDa)

5.12

Isoelectric Point (pI)

56.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 53 - 94 4.4e-07 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10240
fragaria_vesca FvH4_3g17750
malus_domestica MD03G1247700.v1.1 MD11G1269800.v1.1
prunus_persica Prupe.4G156600_v2.0.a1
pyrus_communis pycom03g19640 pycom11g23830
rosa_chinensis RchiOBHm_Chr5g0029541
rosa_laevigata RLG00000033177
rosa_multiflora Rmu_sc0000210.1_g000014
rosa_roxburghii Rroxscaffold_1G00050400
rosa_samantha Rh5AG206900 Rh5BG205600 Rh5CG227700 Rh5DG209300
rosa_wichuraiana Rw5G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
Acc65I GGTACC 1 cut(s) 703
AccB1I GGYRCC 4 cut(s) 442, 673, 694, 703
AclWI GGATC 1 cut(s) 583
AcoI YGGCCR 2 cut(s) 456, 512
AcsI RAATTY 1 cut(s) 808
AcyI GRCGYC 1 cut(s) 443
AfaI GTAC 2 cut(s) 705, 835
AfiI CCNNNNNNNGG 3 cut(s) 181, 276, 347
AflIII ACRYGT 1 cut(s) 18
AjnI CCWGG 2 cut(s) 174, 340
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
AluBI AGCT 6 cut(s) 112, 261, 488, 494, 555, 682
AluI AGCT 6 cut(s) 112, 261, 488, 494, 555, 682
Alw21I GWGCWC 2 cut(s) 48, 684
Alw26I GTCTC 1 cut(s) 844
AlwI GGATC 1 cut(s) 583
AoxI GGCC 6 cut(s) 36, 78, 390, 456, 512, 737
ApeKI GCWGC 1 cut(s) 51
ApoI RAATTY 1 cut(s) 808
Asp718I GGTACC 1 cut(s) 703
AspLEI GCGC 3 cut(s) 56, 70, 445
AspS9I GGNCC 3 cut(s) 78, 338, 390
AsuC2I CCSGG 2 cut(s) 327, 460
AsuHPI GGTGA 3 cut(s) 266, 385, 624
AvaII GGWCC 1 cut(s) 338
AxyI CCTNAGG 2 cut(s) 636, 724
BanI GGYRCC 4 cut(s) 442, 673, 694, 703
BanII GRGCYC 3 cut(s) 318, 482, 684
BbsI GAAGAC 1 cut(s) 357
Bbv12I GWGCWC 2 cut(s) 48, 684
BbvCI CCTCAGC 1 cut(s) 426
BbvI GCAGC 1 cut(s) 38
BccI CCATC 3 cut(s) 457, 511, 685
BceAI ACGGC 1 cut(s) 377
BciT130I CCWGG 2 cut(s) 176, 342
BciVI GTATCC 1 cut(s) 554
BcnI CCSGG 2 cut(s) 327, 460
BcoDI GTCTC 1 cut(s) 844
BfoI RGCGCY 2 cut(s) 71, 446
BfuI GTATCC 1 cut(s) 554
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 4 cut(s) 30, 52, 66, 102
BlsI GCNGC 4 cut(s) 31, 53, 67, 103
Bme1390I CCNGG 4 cut(s) 176, 327, 342, 460
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 3 cut(s) 78, 338, 390
BmiI GGNNCC 7 cut(s) 135, 315, 391, 444, 675, 696, 705
BmrFI CCNGG 4 cut(s) 176, 327, 342, 460
BpiI GAAGAC 1 cut(s) 357
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BpmI CTGGAG 4 cut(s) 332, 504, 510, 668
Bpu10I CCTNAGC 1 cut(s) 426
BpuMI CCSGG 2 cut(s) 327, 460
BsaBI GATNNNNATC 1 cut(s) 546
BsaHI GRCGYC 1 cut(s) 443
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 3 cut(s) 269, 276, 293
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 276, 347
Bse1I ACTGG 2 cut(s) 651, 740
Bse21I CCTNAGG 2 cut(s) 636, 724
Bse8I GATNNNNATC 1 cut(s) 546
BseBI CCWGG 2 cut(s) 176, 342
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 3 cut(s) 468, 696, 719
BseJI GATNNNNATC 1 cut(s) 546
BseLI CCNNNNNNNGG 3 cut(s) 181, 276, 347
BseMII CTCAG 4 cut(s) 417, 627, 738, 810
BseNI ACTGG 2 cut(s) 651, 740
BseRI GAGGAG 2 cut(s) 536, 653
BseXI GCAGC 1 cut(s) 38
BseYI CCCAGC 2 cut(s) 75, 494
BshFI GGCC 6 cut(s) 38, 80, 392, 458, 514, 739
BshNI GGYRCC 4 cut(s) 442, 673, 694, 703
BsiHKAI GWGCWC 2 cut(s) 48, 684
BsiSI CCGG 6 cut(s) 270, 277, 294, 326, 446, 459
BslFI GGGAC 1 cut(s) 620
BslI CCNNNNNNNGG 3 cut(s) 181, 276, 347
BsmAI GTCTC 1 cut(s) 844
BsmFI GGGAC 1 cut(s) 620
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 6 cut(s) 38, 80, 392, 458, 514, 739
Bsp1286I GDGCHC 4 cut(s) 48, 318, 482, 684
Bsp143I GATC 3 cut(s) 547, 575, 629
BspANI GGCC 6 cut(s) 38, 80, 392, 458, 514, 739
BspCNI CTCAG 4 cut(s) 418, 628, 737, 809
BspLI GGNNCC 7 cut(s) 135, 315, 391, 444, 675, 696, 705
BspPI GGATC 1 cut(s) 583
BspT107I GGYRCC 4 cut(s) 442, 673, 694, 703
BsrI ACTGG 2 cut(s) 651, 740
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 3 cut(s) 547, 575, 629
BssNI GRCGYC 1 cut(s) 443
Bst2UI CCWGG 2 cut(s) 176, 342
Bst4CI ACNGT 4 cut(s) 12, 43, 253, 838
Bst6I CTCTTC 1 cut(s) 819
BstACI GRCGYC 1 cut(s) 443
BstC8I GCNNGC 4 cut(s) 82, 114, 118, 122
BstDEI CTNAG 5 cut(s) 426, 582, 636, 724, 796
BstDSI CCRYGG 1 cut(s) 393
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 3 cut(s) 468, 696, 719
BstH2I RGCGCY 2 cut(s) 71, 446
BstHHI GCGC 3 cut(s) 56, 70, 445
BstKTI GATC 3 cut(s) 550, 578, 632
BstMAI GTCTC 1 cut(s) 844
BstMBI GATC 3 cut(s) 547, 575, 629
BstMWI GCNNNNNNNGC 5 cut(s) 35, 62, 81, 171, 736
BstNI CCWGG 2 cut(s) 176, 342
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 4 cut(s) 174, 325, 340, 458
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 357
Bsu36I CCTNAGG 2 cut(s) 636, 724
BsuI GTATCC 1 cut(s) 554
BsuRI GGCC 6 cut(s) 38, 80, 392, 458, 514, 739
BtgI CCRYGG 1 cut(s) 393
BtgZI GCGATG 1 cut(s) 249
BtsCI GGATG 3 cut(s) 468, 696, 719
BtsI GCAGTG 1 cut(s) 515
BtsIMutI CAGTG 2 cut(s) 17, 515
Cac8I GCNNGC 4 cut(s) 82, 114, 118, 122
CfoI GCGC 3 cut(s) 56, 70, 445
Cfr13I GGNCC 3 cut(s) 78, 338, 390
Csp6I GTAC 2 cut(s) 704, 834
CviAII CATG 1 cut(s) 565
CviQI GTAC 2 cut(s) 704, 834
DdeI CTNAG 5 cut(s) 426, 582, 636, 724, 796
DinI GGCGCC 1 cut(s) 444
DpnI GATC 3 cut(s) 549, 577, 631
DpnII GATC 3 cut(s) 547, 575, 629
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 2 cut(s) 456, 512
Eam1104I CTCTTC 1 cut(s) 819
EarI CTCTTC 1 cut(s) 819
EciI GGCGGA 1 cut(s) 47
Ecl136II GAGCTC 1 cut(s) 682
Eco24I GRGCYC 3 cut(s) 318, 482, 684
Eco47I GGWCC 1 cut(s) 338
Eco53kI GAGCTC 1 cut(s) 682
Eco81I CCTNAGG 2 cut(s) 636, 724
Eco91I GGTNACC 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 682
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 174, 340
EcoT38I GRGCYC 3 cut(s) 318, 482, 684
EgeI GGCGCC 1 cut(s) 444
EheI GGCGCC 1 cut(s) 444
FaeI CATG 1 cut(s) 568
FaiI YATR 7 cut(s) 223, 249, 566, 665, 733, 803, 862
FaqI GGGAC 1 cut(s) 620
FatI CATG 1 cut(s) 564
Fnu4HI GCNGC 4 cut(s) 30, 52, 66, 102
FokI GGATG 3 cut(s) 475, 703, 706
FriOI GRGCYC 3 cut(s) 318, 482, 684
Fsp4HI GCNGC 4 cut(s) 30, 52, 66, 102
GlaI GCGC 3 cut(s) 55, 69, 444
GluI GCNGC 4 cut(s) 30, 52, 66, 102
GsaI CCCAGC 2 cut(s) 79, 498
GsuI CTGGAG 4 cut(s) 332, 504, 510, 668
HaeII RGCGCY 2 cut(s) 71, 446
HaeIII GGCC 6 cut(s) 38, 80, 392, 458, 514, 739
HapII CCGG 6 cut(s) 270, 277, 294, 326, 446, 459
HhaI GCGC 3 cut(s) 56, 70, 445
Hin1I GRCGYC 1 cut(s) 443
Hin1II CATG 1 cut(s) 568
Hin6I GCGC 3 cut(s) 54, 68, 443
HinP1I GCGC 3 cut(s) 54, 68, 443
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HinfI GANTC 5 cut(s) 383, 534, 608, 614, 764
HpaI GTTAAC 1 cut(s) 790
HpaII CCGG 6 cut(s) 270, 277, 294, 326, 446, 459
HphI GGTGA 3 cut(s) 266, 385, 624
Hpy166II GTNNAC 3 cut(s) 97, 599, 790
Hpy188I TCNGA 5 cut(s) 382, 552, 613, 753, 799
Hpy188III TCNNGA 2 cut(s) 483, 782
Hpy8I GTNNAC 3 cut(s) 97, 599, 790
Hpy99I CGWCG 4 cut(s) 62, 89, 373, 852
HpyAV CCTTC 1 cut(s) 717
HpyCH4III ACNGT 4 cut(s) 12, 43, 253, 838
HpyCH4IV ACGT 3 cut(s) 18, 786, 847
HpyCH4V TGCA 4 cut(s) 356, 435, 663, 805
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 62, 81, 171, 736
HpyF3I CTNAG 5 cut(s) 426, 582, 636, 724, 796
HpySE526I ACGT 3 cut(s) 18, 786, 847
Hsp92I GRCGYC 1 cut(s) 443
Hsp92II CATG 1 cut(s) 568
HspAI GCGC 3 cut(s) 54, 68, 443
KasI GGCGCC 1 cut(s) 442
KpnI GGTACC 1 cut(s) 707
KspAI GTTAAC 1 cut(s) 790
Kzo9I GATC 3 cut(s) 547, 575, 629
LmnI GCTCC 3 cut(s) 313, 485, 491
Lsp1109I GCAGC 1 cut(s) 38
MaeII ACGT 3 cut(s) 18, 786, 847
MaeIII GTNAC 2 cut(s) 14, 272
MalI GATC 3 cut(s) 549, 577, 631
MboI GATC 3 cut(s) 547, 575, 629
MboII GAAGA 4 cut(s) 16, 187, 357, 806
MhlI GDGCHC 4 cut(s) 48, 318, 482, 684
MluCI AATT 2 cut(s) 297, 808
Mly113I GGCGCC 1 cut(s) 443
MlyI GAGTC 2 cut(s) 392, 602
MseI TTAA 3 cut(s) 300, 626, 789
MspI CCGG 6 cut(s) 270, 277, 294, 326, 446, 459
MspR9I CCNGG 4 cut(s) 176, 327, 342, 460
Mva1269I GAATGC 1 cut(s) 437
MvaI CCWGG 2 cut(s) 176, 342
MwoI GCNNNNNNNGC 5 cut(s) 35, 62, 81, 171, 736
NarI GGCGCC 1 cut(s) 443
NciI CCSGG 2 cut(s) 327, 460
NdeII GATC 3 cut(s) 547, 575, 629
NlaIII CATG 1 cut(s) 568
NlaIV GGNNCC 7 cut(s) 135, 315, 391, 444, 675, 696, 705
NmuCI GTSAC 1 cut(s) 272
PcsI WCGNNNNNNNCGW 1 cut(s) 543
PctI GAATGC 1 cut(s) 437
PfeI GAWTC 3 cut(s) 534, 614, 764
PkrI GCNGC 4 cut(s) 31, 53, 67, 103
PleI GAGTC 2 cut(s) 391, 602
PluTI GGCGCC 1 cut(s) 446
PpsI GAGTC 2 cut(s) 391, 602
Psp124BI GAGCTC 1 cut(s) 684
Psp6I CCWGG 2 cut(s) 174, 340
PspEI GGTNACC 1 cut(s) 272
PspFI CCCAGC 2 cut(s) 75, 494
PspGI CCWGG 2 cut(s) 174, 340
PspN4I GGNNCC 7 cut(s) 135, 315, 391, 444, 675, 696, 705
PspPI GGNCC 3 cut(s) 78, 338, 390
RsaI GTAC 2 cut(s) 705, 835
RsaNI GTAC 2 cut(s) 704, 834
SacI GAGCTC 1 cut(s) 684
SaqAI TTAA 3 cut(s) 300, 626, 789
SatI GCNGC 4 cut(s) 30, 52, 66, 102
Sau3AI GATC 3 cut(s) 547, 575, 629
Sau96I GGNCC 3 cut(s) 78, 338, 390
SchI GAGTC 2 cut(s) 392, 602
ScrFI CCNGG 4 cut(s) 176, 327, 342, 460
SduI GDGCHC 4 cut(s) 48, 318, 482, 684
SfoI GGCGCC 1 cut(s) 444
SinI GGWCC 1 cut(s) 338
Sse9I AATT 2 cut(s) 297, 808
SspDI GGCGCC 1 cut(s) 442
SstI GAGCTC 1 cut(s) 684
StyD4I CCNGG 4 cut(s) 174, 325, 340, 458
TaaI ACNGT 4 cut(s) 12, 43, 253, 838
TaiI ACGT 3 cut(s) 21, 789, 850
TaqI TCGA 1 cut(s) 546
TasI AATT 2 cut(s) 297, 808
TauI GCSGC 3 cut(s) 32, 68, 104
TfiI GAWTC 3 cut(s) 534, 614, 764
Tru1I TTAA 3 cut(s) 300, 626, 789
Tru9I TTAA 3 cut(s) 300, 626, 789
TscAI CASTG 2 cut(s) 17, 515
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 1 cut(s) 51
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 17, 606
TspRI CASTG 2 cut(s) 17, 515
VpaK11BI GGWCC 1 cut(s) 338
XapI RAATTY 1 cut(s) 808
XcmI CCANNNNNNNNNTGG 2 cut(s) 182, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.