Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0015021

Physical Location & Seq

Genomic Coordinates Forward (+)

8972284 .. 8974288

Gene Structure 2005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G156600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAAGATACAGTGCAACGTGTGCGAGGCAGCTGAGGCCAACGTACTATGCTGTGCAGACGAGGCAGCTCTGTGCTGGGCTTGTGATGAGAAGGTTCACAAAGCAAACAAGCTCGCAAGCAAGCACCAGAGGGTTCCTCTGTCTGCATCTCACATGCCCAAATGCGATATCTGCCAGGAGGCAGTTGGGTATTTTTTCTGTTTAGAAGATCGAGCTTTGCTCTGTAGAACATGTGATGTTGCTATACACGCTGCTAATAGCTTGGTGTCAGCTCACCGGAGGTTTTTGCTCACCGGAATCAAAGTTGGCCCTGAGCCAACTGAGCCTGATTCTGGAGGAGGTGGTGTTGGTGGTGGTGGTGTTGGTGTTGGTGCCTCTTCTTCTTCTGTGAAGTTACGTTCTGGGTCTGGGTCTGGGTCTGGGTCTGGGTCGAGATGCGATACGCACAATCCAATGCCTGTGGAGTGCAAGGTAGCACCGGCCGGTGTTGATGTGATGCCTTTTGCTGGGGGTTCTTCAGCTGGGACTGTTCCTCAGTGGCATATAGATGAGTTTCTGGGACTCTCTGATTTTGATCAGAGTTTTAGCTACATTGAAAATGGATCTTCCAAGGCTGACTGCGGTAAACTTGGGGAGTATGACTCACCAGCTTTAAAATCATCTGAGGAGGAAATGGAAGATTATGAGTGCATAGGTGAGGTGCCAGAGACCTCTTGGATGGTACCCCAGGTACCTTCCCCACCTACAGCCTCGGGACTCTACTGGCCTAGAAGTTCTCAGATTTCATCTGATTTTGCAGTGTTTGTTCCAGACATTTGCCACTCACAAATGCAAAACCCTCTTTATTCTCAACATAATGGTACCGTCTCAAAACGTCGTAGGCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000989 GO:0003674 GO:0008150 GO:0009889 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

297

Amino Acids

31.46

Weight (kDa)

5.26

Isoelectric Point (pI)

64.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10240
fragaria_vesca	FvH4_3g17750
malus_domestica	MD03G1247700.v1.1 MD11G1269800.v1.1
prunus_persica	Prupe.4G156600_v2.0.a1
pyrus_communis	pycom03g19640 pycom11g23830
rosa_chinensis	RchiOBHm_Chr5g0029541
rosa_laevigata	RLG00000033177
rosa_multiflora	Rmu_sc0000210.1_g000014
rosa_roxburghii	Rroxscaffold_1G00050400
rosa_samantha	Rh5AG206900 Rh5BG205600 Rh5CG227700 Rh5DG209300
rosa_wichuraiana	Rw5G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	721, 730, 860
AccB1I	GGYRCC	5 cut(s)	371, 700, 721, 730, 860
AciI	CCGC	1 cut(s)	621
AclWI	GGATC	1 cut(s)	610
AcoI	YGGCCR	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	501
AfaI	GTAC	4 cut(s)	45, 723, 732, 862
AfiI	CCNNNNNNNGG	2 cut(s)	332, 506
AflIII	ACRYGT	2 cut(s)	18, 230
AgsI	TTSAA	1 cut(s)	596
AjnI	CCWGG	2 cut(s)	174, 726
AluBI	AGCT	9 cut(s)	32, 68, 112, 215, 261, 272, 521, 588, 650
AluI	AGCT	9 cut(s)	32, 68, 112, 215, 261, 272, 521, 588, 650
Alw26I	GTCTC	2 cut(s)	701, 871
AlwI	GGATC	1 cut(s)	610
Ama87I	CYCGRG	1 cut(s)	751
AoxI	GGCC	4 cut(s)	36, 307, 480, 764
ApeKI	GCWGC	3 cut(s)	29, 65, 251
Asp718I	GGTACC	3 cut(s)	721, 730, 860
AspS9I	GGNCC	1 cut(s)	308
AsuHPI	GGTGA	4 cut(s)	266, 283, 636, 707
AvaI	CYCGRG	1 cut(s)	751
BanI	GGYRCC	5 cut(s)	371, 700, 721, 730, 860
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	3 cut(s)	41, 77, 238
BccI	CCATC	1 cut(s)	712
BciT130I	CCWGG	2 cut(s)	176, 728
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	2 cut(s)	701, 871
BfaI	CTAG	2 cut(s)	768, 889
BfmI	CTRYAG	2 cut(s)	223, 744
BisI	GCNGC	3 cut(s)	30, 66, 252
BlsI	GCNGC	3 cut(s)	31, 67, 253
Bme1390I	CCNGG	2 cut(s)	176, 728
BmeT110I	CYCGRG	1 cut(s)	751
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	6 cut(s)	135, 373, 702, 723, 732, 862
BmrFI	CCNGG	2 cut(s)	176, 728
BmsI	GCATC	3 cut(s)	155, 425, 486
BplI	GAGNNNNNCTC	6 cut(s)	121, 153, 204, 236, 626, 658
BpmI	CTGGAG	1 cut(s)	354
Bpu10I	CCTNAGC	2 cut(s)	33, 312
BsaBI	GATNNNNATC	1 cut(s)	573
BsaI	GGTCTC	1 cut(s)	701
BsaJI	CCNNGG	3 cut(s)	609, 726, 750
BsaWI	WCCGGW	2 cut(s)	276, 293
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 506
Bse118I	RCCGGY	2 cut(s)	478, 482
Bse1I	ACTGG	1 cut(s)	767
Bse8I	GATNNNNATC	1 cut(s)	573
BseBI	CCWGG	2 cut(s)	176, 728
BseDI	CCNNGG	3 cut(s)	609, 726, 750
BseGI	GGATG	1 cut(s)	723
BseJI	GATNNNNATC	1 cut(s)	573
BseLI	CCNNNNNNNGG	2 cut(s)	332, 506
BseMII	CTCAG	6 cut(s)	24, 303, 312, 548, 654, 791
BseNI	ACTGG	1 cut(s)	767
BseRI	GAGGAG	2 cut(s)	351, 680
BseX3I	CGGCCG	1 cut(s)	480
BseXI	GCAGC	3 cut(s)	41, 77, 238
BseYI	CCCAGC	3 cut(s)	75, 506, 521
BsgI	GTGCAG	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	483
BshFI	GGCC	4 cut(s)	38, 309, 482, 766
BshNI	GGYRCC	5 cut(s)	371, 700, 721, 730, 860
BsiEI	CGRYCG	1 cut(s)	483
BsiHKCI	CYCGRG	1 cut(s)	751
BsiSI	CCGG	4 cut(s)	277, 294, 479, 483
BslFI	GGGAC	3 cut(s)	538, 573, 768
BslI	CCNNNNNNNGG	2 cut(s)	332, 506
BsmAI	GTCTC	2 cut(s)	701, 871
BsmBI	CGTCTC	1 cut(s)	871
BsmFI	GGGAC	3 cut(s)	538, 573, 768
BsnI	GGCC	4 cut(s)	38, 309, 482, 766
Bso31I	GGTCTC	1 cut(s)	701
BsoBI	CYCGRG	1 cut(s)	751
Bsp143I	GATC	3 cut(s)	208, 574, 602
BspACI	CCGC	1 cut(s)	621
BspANI	GGCC	4 cut(s)	38, 309, 482, 766
BspCNI	CTCAG	6 cut(s)	25, 304, 313, 547, 655, 790
BspLI	GGNNCC	6 cut(s)	135, 373, 702, 723, 732, 862
BspPI	GGATC	1 cut(s)	610
BspT107I	GGYRCC	5 cut(s)	371, 700, 721, 730, 860
BspTNI	GGTCTC	1 cut(s)	701
BsrFI	RCCGGY	2 cut(s)	478, 482
BsrI	ACTGG	1 cut(s)	767
BssAI	RCCGGY	2 cut(s)	478, 482
BssECI	CCNNGG	3 cut(s)	609, 726, 750
BssMI	GATC	3 cut(s)	208, 574, 602
BssT1I	CCWWGG	1 cut(s)	609
Bst2UI	CCWGG	2 cut(s)	176, 728
Bst4CI	ACNGT	3 cut(s)	12, 529, 865
Bst6I	CTCTTC	1 cut(s)	382
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	3 cut(s)	114, 118, 122
BstDEI	CTNAG	6 cut(s)	33, 312, 321, 534, 663, 777
BstF5I	GGATG	1 cut(s)	723
BstKTI	GATC	3 cut(s)	211, 577, 605
BstMAI	GTCTC	2 cut(s)	701, 871
BstMBI	GATC	3 cut(s)	208, 574, 602
BstMCI	CGRYCG	1 cut(s)	483
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 35, 62, 171, 248, 322
BstNI	CCWGG	2 cut(s)	176, 728
BstNSI	RCATGY	2 cut(s)	157, 234
BstSCI	CCNGG	2 cut(s)	174, 726
BstSFI	CTRYAG	2 cut(s)	223, 744
BstV1I	GCAGC	3 cut(s)	41, 77, 238
BstX2I	RGATCY	1 cut(s)	602
BstYI	RGATCY	1 cut(s)	602
BstZI	CGGCCG	1 cut(s)	480
BsuRI	GGCC	4 cut(s)	38, 309, 482, 766
BtsCI	GGATG	1 cut(s)	723
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	3 cut(s)	17, 542, 804
Cac8I	GCNNGC	3 cut(s)	114, 118, 122
Cfr10I	RCCGGY	2 cut(s)	478, 482
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	4 cut(s)	44, 722, 731, 861
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviAII	CATG	2 cut(s)	154, 231
CviQI	GTAC	4 cut(s)	44, 722, 731, 861
DdeI	CTNAG	6 cut(s)	33, 312, 321, 534, 663, 777
DpnI	GATC	3 cut(s)	210, 576, 604
DpnII	GATC	3 cut(s)	208, 574, 602
DraI	TTTAAA	1 cut(s)	654
EaeI	YGGCCR	1 cut(s)	480
EagI	CGGCCG	1 cut(s)	480
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
EclXI	CGGCCG	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	609
Eco31I	GGTCTC	1 cut(s)	701
Eco32I	GATATC	1 cut(s)	169
Eco52I	CGGCCG	1 cut(s)	480
Eco57I	CTGAAG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	751
EcoRII	CCWGG	2 cut(s)	174, 726
EcoRV	GATATC	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	609
Esp3I	CGTCTC	1 cut(s)	871
FaeI	CATG	2 cut(s)	157, 234
FaqI	GGGAC	3 cut(s)	538, 573, 768
FatI	CATG	2 cut(s)	153, 230
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	3 cut(s)	30, 66, 252
FokI	GGATG	1 cut(s)	730
Fsp4HI	GCNGC	3 cut(s)	30, 66, 252
FspBI	CTAG	2 cut(s)	768, 889
GluI	GCNGC	3 cut(s)	30, 66, 252
GsaI	CCCAGC	3 cut(s)	79, 510, 525
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	4 cut(s)	38, 309, 482, 766
HapII	CCGG	4 cut(s)	277, 294, 479, 483
Hin1II	CATG	2 cut(s)	157, 234
HinfI	GANTC	5 cut(s)	297, 329, 561, 641, 756
HpaII	CCGG	4 cut(s)	277, 294, 479, 483
HphI	GGTGA	4 cut(s)	266, 283, 636, 707
Hpy166II	GTNNAC	2 cut(s)	97, 626
Hpy188I	TCNGA	5 cut(s)	568, 579, 664, 780, 790
Hpy188III	TCNNGA	4 cut(s)	333, 432, 753, 809
Hpy8I	GTNNAC	2 cut(s)	97, 626
Hpy99I	CGWCG	1 cut(s)	879
HpyAV	CCTTC	2 cut(s)	85, 744
HpyCH4III	ACNGT	3 cut(s)	12, 529, 865
HpyCH4IV	ACGT	4 cut(s)	18, 42, 397, 874
HpyCH4V	TGCA	7 cut(s)	15, 56, 146, 468, 690, 797, 832
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 35, 62, 171, 248, 322
HpyF3I	CTNAG	6 cut(s)	33, 312, 321, 534, 663, 777
HpySE526I	ACGT	4 cut(s)	18, 42, 397, 874
Hsp92II	CATG	2 cut(s)	157, 234
KpnI	GGTACC	3 cut(s)	725, 734, 864
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	3 cut(s)	208, 574, 602
Lsp1109I	GCAGC	3 cut(s)	41, 77, 238
LweI	GCATC	3 cut(s)	155, 425, 486
MaeI	CTAG	2 cut(s)	768, 889
MaeII	ACGT	4 cut(s)	18, 42, 397, 874
MaeIII	GTNAC	1 cut(s)	393
MalI	GATC	3 cut(s)	210, 576, 604
MboI	GATC	3 cut(s)	208, 574, 602
MboII	GAAGA	8 cut(s)	16, 218, 369, 372, 375, 507, 597, 689
MflI	RGATCY	1 cut(s)	602
MluCI	AATT	1 cut(s)	884
MlyI	GAGTC	3 cut(s)	555, 635, 750
MseI	TTAA	1 cut(s)	653
MslI	CAYNNNNRTG	1 cut(s)	546
MspA1I	CMGCKG	2 cut(s)	32, 521
MspI	CCGG	4 cut(s)	277, 294, 479, 483
MspR9I	CCNGG	2 cut(s)	176, 728
MvaI	CCWGG	2 cut(s)	176, 728
MwoI	GCNNNNNNNGC	6 cut(s)	21, 35, 62, 171, 248, 322
NdeII	GATC	3 cut(s)	208, 574, 602
NlaIII	CATG	2 cut(s)	157, 234
NlaIV	GGNNCC	6 cut(s)	135, 373, 702, 723, 732, 862
NspI	RCATGY	2 cut(s)	157, 234
PciI	ACATGT	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	297, 329
PkrI	GCNGC	3 cut(s)	31, 67, 253
PleI	GAGTC	3 cut(s)	555, 635, 750
PpsI	GAGTC	3 cut(s)	555, 635, 750
PscI	ACATGT	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	174, 726
PspFI	CCCAGC	3 cut(s)	75, 506, 521
PspGI	CCWGG	2 cut(s)	174, 726
PspN4I	GGNNCC	6 cut(s)	135, 373, 702, 723, 732, 862
PspPI	GGNCC	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	602
PvuII	CAGCTG	2 cut(s)	32, 521
RsaI	GTAC	4 cut(s)	45, 723, 732, 862
RsaNI	GTAC	4 cut(s)	44, 722, 731, 861
RseI	CAYNNNNRTG	1 cut(s)	546
SaqAI	TTAA	1 cut(s)	653
SatI	GCNGC	3 cut(s)	30, 66, 252
Sau3AI	GATC	3 cut(s)	208, 574, 602
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	3 cut(s)	555, 635, 750
ScrFI	CCNGG	2 cut(s)	176, 728
SfaNI	GCATC	3 cut(s)	155, 425, 486
SfcI	CTRYAG	2 cut(s)	223, 744
SmiMI	CAYNNNNRTG	1 cut(s)	546
Sse9I	AATT	1 cut(s)	884
SsiI	CCGC	1 cut(s)	621
SspMI	CTAG	2 cut(s)	768, 889
StyD4I	CCNGG	2 cut(s)	174, 726
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	3 cut(s)	12, 529, 865
TaiI	ACGT	4 cut(s)	21, 45, 400, 877
TaqI	TCGA	2 cut(s)	211, 431
TasI	AATT	1 cut(s)	884
TfiI	GAWTC	2 cut(s)	297, 329
Tru1I	TTAA	1 cut(s)	653
Tru9I	TTAA	1 cut(s)	653
TscAI	CASTG	3 cut(s)	17, 542, 804
TseI	GCWGC	3 cut(s)	29, 65, 251
TspDTI	ATGAA	2 cut(s)	17, 774
TspRI	CASTG	3 cut(s)	17, 542, 804
XceI	RCATGY	2 cut(s)	157, 234
XcmI	CCANNNNNNNNNTGG	2 cut(s)	182, 711
XspI	CTAG	2 cut(s)	768, 889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.