AT4G11660

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005627
Physical Location & Seq
Forward (+)
7042354 .. 7044708
2355 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G11660.1

Sequence Viewer

Length: 1134 bp
ATGCCGGGGGAACAAACCGGAGAAACTCCGACGGTGGCCGGAGTTGGCGGCGGTGGAGCTGGTTGTAGCGCCGGGAATAGTGGTGGAAGTAGTGGATGTGGTGCTGGTGGTGGCGGTGGTGGTAGTGGTGGAGGTGGTGGCGGAGGAGGAGATTCACAGAGGTCAATTCCGACGCCGTTTTTGACGAAAACGTATCAGCTTGTGGAAGATCCGGTTTACGACGAATTGATCTCGTGGAACGAAGATGGAACCACTTTTATTGTGTGGCGACCAGCTGAATTCGCTAGAGATCTTCTTCCCAAATACTTCAAACATAATAACTTCTCGAGTTTTGTTCGTCAGCTCAATACTTACGGATTTCGAAAAGTAGTTCCAGATCGTTGGGAGTTTTCTAATGATTGTTTTAAGAGAGGTGAGAAGATTCTGCTTCGGGATATTCAACGGCGGAAAATCTCTCAGCCTGCTATGGCCGCGGCTGCTGCAGCGGCGGCGGCAGCCGTAGCGGCTTCGGCTGTTACAGTAGCAGCTGTTCCTGTTGTAGCTCATATTGTTTCTCCATCGAACTCTGGAGAAGAACAGGTTATATCGTCTAATTCTTCGCCTGCGGCTGCTGCTGCTGCTATAGGAGGAGTGGTTGGTGGTGGTTCTTTGCAGAGGACAACGAGCTGCACCACTGCACCAGAGCTGGTTGAGGAGAATGAGCGATTGAGGAAAGATAATGAGCGATTGAGGAAAGAGATGACAAAGCTTAAAGGATTGTATGCGAATATCTACACATTAATGGCGAATTTCACACCGGGTCAAGAAGATTGTGCGCATTTGTTACCTGAAGGGAAACCTTTAGATCTTTTACCGGAGAGACAAGAGATGAGTGAAGCCATTATGGCTTCTGAAATAGAGACAGGGATTGGTCTGAAACTTGGTGAGGATTTGACTCCAAGGTTGTTTGGGGTTTCTATTGGGGTCAAGCGAGCTAGAAGAGAAGAAGAATTGGGTGCTGCAGAGGAAGAAGATGATGATAGACGAGAAGCTGCTGCCCAAGAGGGAGAACAAAGTTCTGATGTTAAGGCAGAGCCAATGGAGGAGAATAACTCCGGTAACCATAATGGGTCGTGGCTTGAACTCGGAAAATGA

Protein Analysis

377

Amino Acids

39.7

Weight (kDa)

4.92

Isoelectric Point (pI)

59.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 60 - 149 8.8e-31 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 816
AccII CGCG 1 cut(s) 473
AclWI GGATC 1 cut(s) 203
AcoI YGGCCR 2 cut(s) 36, 468
AcsI RAATTY 2 cut(s) 278, 787
AcuI CTGAAG 1 cut(s) 849
AcyI GRCGYC 1 cut(s) 173
AgsI TTSAA 3 cut(s) 310, 440, 1121
Alw26I GTCTC 2 cut(s) 853, 893
AlwI GGATC 1 cut(s) 203
Ama87I CYCGRG 1 cut(s) 325
AoxI GGCC 2 cut(s) 36, 468
ApoI RAATTY 2 cut(s) 278, 787
ArsI GACNNNNNNTTYG 2 cut(s) 163, 195
AseI ATTAAT 1 cut(s) 779
AspLEI GCGC 2 cut(s) 71, 817
AsuC2I CCSGG 3 cut(s) 6, 73, 798
AsuHPI GGTGA 2 cut(s) 425, 935
AsuII TTCGAA 1 cut(s) 361
AvaI CYCGRG 1 cut(s) 325
BauI CACGAG 1 cut(s) 232
BccI CCATC 2 cut(s) 239, 565
BceAI ACGGC 3 cut(s) 160, 458, 482
BcnI CCSGG 3 cut(s) 6, 73, 798
BcoDI GTCTC 2 cut(s) 853, 893
BfaI CTAG 2 cut(s) 285, 975
BfmI CTRYAG 3 cut(s) 480, 621, 999
BfoI RGCGCY 1 cut(s) 72
BglI GCCNNNNNGGC 2 cut(s) 503, 884
BglII AGATCT 2 cut(s) 289, 844
Bme1390I CCNGG 3 cut(s) 6, 73, 798
BmeT110I CYCGRG 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 3 cut(s) 6, 73, 798
BplI GAGNNNNNCTC 2 cut(s) 1076, 1108
BpmI CTGGAG 1 cut(s) 588
Bpu14I TTCGAA 1 cut(s) 361
BpuMI CCSGG 3 cut(s) 6, 73, 798
BsaHI GRCGYC 1 cut(s) 173
BsaJI CCNNGG 3 cut(s) 5, 471, 938
BsaWI WCCGGW 4 cut(s) 17, 211, 853, 1094
BsaXI ACNNNNNCTCC 2 cut(s) 618, 648
BseDI CCNNGG 3 cut(s) 5, 471, 938
BseGI GGATG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 470
BseRI GAGGAG 5 cut(s) 159, 162, 642, 707, 1097
BsgI GTGCAG 2 cut(s) 652, 660
Bsh1236I CGCG 1 cut(s) 473
BshFI GGCC 2 cut(s) 38, 470
BsiHKCI CYCGRG 1 cut(s) 325
BsiSI CCGG 8 cut(s) 5, 18, 39, 72, 212, 797, 854, 1095
BsmAI GTCTC 2 cut(s) 853, 893
BsnI GGCC 2 cut(s) 38, 470
BsoBI CYCGRG 1 cut(s) 325
Bsp119I TTCGAA 1 cut(s) 361
Bsp143I GATC 5 cut(s) 208, 228, 289, 376, 844
BspANI GGCC 2 cut(s) 38, 470
BspCNI CTCAG 1 cut(s) 469
BspFNI CGCG 1 cut(s) 473
BspLI GGNNCC 1 cut(s) 250
BspMAI CTGCAG 2 cut(s) 484, 1003
BspPI GGATC 1 cut(s) 203
BspT104I TTCGAA 1 cut(s) 361
BssECI CCNNGG 3 cut(s) 5, 471, 938
BssMI GATC 5 cut(s) 208, 228, 289, 376, 844
BssNI GRCGYC 1 cut(s) 173
BssSI CACGAG 1 cut(s) 232
BssT1I CCWWGG 1 cut(s) 938
Bst2BI CACGAG 1 cut(s) 232
Bst4CI ACNGT 2 cut(s) 34, 520
Bst6I CTCTTC 1 cut(s) 973
BstACI GRCGYC 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 361
BstC8I GCNNGC 3 cut(s) 462, 603, 972
BstDEI CTNAG 1 cut(s) 456
BstDSI CCRYGG 1 cut(s) 471
BstEII GGTNACC 1 cut(s) 1097
BstF5I GGATG 1 cut(s) 101
BstFNI CGCG 1 cut(s) 473
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 2 cut(s) 71, 817
BstKTI GATC 5 cut(s) 211, 231, 292, 379, 847
BstMAI GTCTC 2 cut(s) 853, 893
BstMBI GATC 5 cut(s) 208, 228, 289, 376, 844
BstPI GGTNACC 1 cut(s) 1097
BstSCI CCNGG 3 cut(s) 4, 71, 796
BstSFI CTRYAG 3 cut(s) 480, 621, 999
BstUI CGCG 1 cut(s) 473
BstX2I RGATCY 3 cut(s) 208, 289, 844
BstXI CCANNNNNNTGG 1 cut(s) 381
BstYI RGATCY 3 cut(s) 208, 289, 844
BsuRI GGCC 2 cut(s) 38, 470
BtgI CCRYGG 1 cut(s) 471
BtsCI GGATG 1 cut(s) 101
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 1 cut(s) 672
Cac8I GCNNGC 3 cut(s) 462, 603, 972
CfoI GCGC 2 cut(s) 71, 817
Cfr42I CCGCGG 1 cut(s) 474
CseI GACGC 1 cut(s) 181
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
DdeI CTNAG 1 cut(s) 456
DpnI GATC 5 cut(s) 210, 230, 291, 378, 846
DpnII GATC 5 cut(s) 208, 228, 289, 376, 844
EaeI YGGCCR 2 cut(s) 36, 468
Eam1104I CTCTTC 1 cut(s) 973
EarI CTCTTC 1 cut(s) 973
EciI GGCGGA 2 cut(s) 156, 460
Eco130I CCWWGG 1 cut(s) 938
Eco57I CTGAAG 1 cut(s) 849
Eco88I CYCGRG 1 cut(s) 325
Eco91I GGTNACC 1 cut(s) 1097
EcoO65I GGTNACC 1 cut(s) 1097
EcoRI GAATTC 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 938
ErhI CCWWGG 1 cut(s) 938
FaiI YATR 8 cut(s) 315, 467, 546, 584, 623, 762, 884, 1104
FokI GGATG 1 cut(s) 108
FspAI RTGCGCAY 1 cut(s) 816
FspBI CTAG 2 cut(s) 285, 975
FspI TGCGCA 1 cut(s) 816
GlaI GCGC 2 cut(s) 70, 816
GsuI CTGGAG 1 cut(s) 588
HaeII RGCGCY 1 cut(s) 72
HaeIII GGCC 2 cut(s) 38, 470
HapII CCGG 8 cut(s) 5, 18, 39, 72, 212, 797, 854, 1095
HgaI GACGC 1 cut(s) 181
HhaI GCGC 2 cut(s) 71, 817
Hin1I GRCGYC 1 cut(s) 173
Hin6I GCGC 2 cut(s) 69, 815
HinP1I GCGC 2 cut(s) 69, 815
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 3 cut(s) 152, 421, 934
HpaII CCGG 8 cut(s) 5, 18, 39, 72, 212, 797, 854, 1095
HphI GGTGA 2 cut(s) 425, 935
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 6 cut(s) 30, 171, 892, 915, 1060, 1127
Hpy188III TCNNGA 5 cut(s) 325, 374, 431, 567, 803
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 3 cut(s) 34, 175, 224
HpyAV CCTTC 1 cut(s) 824
HpyCH4III ACNGT 2 cut(s) 34, 520
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 5 cut(s) 482, 652, 669, 677, 1001
HpyF3I CTNAG 1 cut(s) 456
HpySE526I ACGT 1 cut(s) 191
Hsp92I GRCGYC 1 cut(s) 173
HspAI GCGC 2 cut(s) 69, 815
KspI CCGCGG 1 cut(s) 474
Kzo9I GATC 5 cut(s) 208, 228, 289, 376, 844
LmnI GCTCC 1 cut(s) 56
MaeI CTAG 2 cut(s) 285, 975
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 3 cut(s) 514, 822, 1097
MalI GATC 5 cut(s) 210, 230, 291, 378, 846
MboI GATC 5 cut(s) 208, 228, 289, 376, 844
MflI RGATCY 3 cut(s) 208, 289, 844
MluCI AATT 6 cut(s) 165, 224, 278, 592, 787, 989
MlyI GAGTC 1 cut(s) 928
MmeI TCCRAC 2 cut(s) 53, 194
MseI TTAA 4 cut(s) 405, 750, 779, 1065
MslI CAYNNNNRTG 1 cut(s) 779
MspA1I CMGCKG 4 cut(s) 275, 473, 485, 527
MspI CCGG 8 cut(s) 5, 18, 39, 72, 212, 797, 854, 1095
MspR9I CCNGG 3 cut(s) 6, 73, 798
MvnI CGCG 1 cut(s) 473
NciI CCSGG 3 cut(s) 6, 73, 798
NdeII GATC 5 cut(s) 208, 228, 289, 376, 844
NlaIV GGNNCC 1 cut(s) 250
NsbI TGCGCA 1 cut(s) 816
NspV TTCGAA 1 cut(s) 361
PaeR7I CTCGAG 1 cut(s) 325
PfeI GAWTC 2 cut(s) 152, 421
PleI GAGTC 1 cut(s) 928
PpsI GAGTC 1 cut(s) 928
PshBI ATTAAT 1 cut(s) 779
PspEI GGTNACC 1 cut(s) 1097
PspN4I GGNNCC 1 cut(s) 250
PsrI GAACNNNNNNTAC 2 cut(s) 513, 545
PstI CTGCAG 2 cut(s) 484, 1003
PsuI RGATCY 3 cut(s) 208, 289, 844
PvuII CAGCTG 2 cut(s) 275, 527
RseI CAYNNNNRTG 1 cut(s) 779
SacII CCGCGG 1 cut(s) 474
SaqAI TTAA 4 cut(s) 405, 750, 779, 1065
Sau3AI GATC 5 cut(s) 208, 228, 289, 376, 844
SchI GAGTC 1 cut(s) 928
ScrFI CCNGG 3 cut(s) 6, 73, 798
SfcI CTRYAG 3 cut(s) 480, 621, 999
Sfr274I CTCGAG 1 cut(s) 325
Sfr303I CCGCGG 1 cut(s) 474
SfuI TTCGAA 1 cut(s) 361
SgrBI CCGCGG 1 cut(s) 474
SlaI CTCGAG 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 779
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 6 cut(s) 165, 224, 278, 592, 787, 989
SspMI CTAG 2 cut(s) 285, 975
StyD4I CCNGG 3 cut(s) 4, 71, 796
StyI CCWWGG 1 cut(s) 938
TaaI ACNGT 2 cut(s) 34, 520
TaiI ACGT 1 cut(s) 194
TaqI TCGA 3 cut(s) 326, 361, 560
TasI AATT 6 cut(s) 165, 224, 278, 592, 787, 989
TauI GCSGC 8 cut(s) 51, 473, 476, 488, 491, 494, 506, 608
TfiI GAWTC 2 cut(s) 152, 421
Tru1I TTAA 4 cut(s) 405, 750, 779, 1065
Tru9I TTAA 4 cut(s) 405, 750, 779, 1065
TscAI CASTG 1 cut(s) 679
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 1 cut(s) 679
VspI ATTAAT 1 cut(s) 779
XapI RAATTY 2 cut(s) 278, 787
XhoI CTCGAG 1 cut(s) 325
XspI CTAG 2 cut(s) 285, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.