FvH4_5g01770

Heat Stress Transcription Factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
1126180 .. 1128619
2440 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01770.t1

Sequence Viewer

Length: 1068 bp
ATGGCTTCGTTGCCGGACCAGAACGGCGATTCGGGGCCGGGCGGCGGCGGCGGACGGGAATCGCAGAGGACGATTCCGACGCCGTTTTTGACGAAAACGTATGAGCTTGTGGACGATCCGGAGGCCGACGATATGATCTCGTGGAGCGAAGGCGGATCGACTTTTGTAGTGTGGCGGCCGGCCGAGTTCGCAAGAGATATTCTCCCCAAGTATTTCAAGCACAACAACTTCTCCAGCTTTGTGCGACAGCTCAACACTTATGGATTCCGGAAGGTTGTACCGGATCGGTGGGAGTTTGCGAACGACTGCTTCAAAAGAGGGGAGAAAGGACTCCTCCGGGAGATTCAGCGCCGGAAAATCTCTCCGTCGGTGTCCGCTTCCGCCGCGACGGTGGCGGCGGCAGCTGCGGTTACAGCGGCGGTGCTGCCTGTGGCGGCGGTCTCGGTGTCTCCGGCTAACTCCGGCGACGAGCAGGTGATCTCGTCCAACTCGTCGCCGATGGCCGTACCGACGCCGGCGCCGGCGGTGACGTTGCTGCAGCGGGCCAGGAGCTGCAACTCCACGGCGGAGATACTAGAGGAGAATGAGCGGTTGAGGAAGGAGAACATGCAGTTAAGCAACGAGCTGACTCAGCTTCGGGGGCTGTGTAACAATATCCTTGGAATGATGACCAACTACGCCTCGGGACAGTTGGCCAGAGGCGGCGGAGCAGTGGCGGATGATAAGCCGCCACCTCCGCCGCTTCATTCGGTGAAAATTTCTCAGGGAGGGGAAAACGCCGCCGTCTCCGGAGGTGACATGGCGGGAGATTCGGCGGAGGAGGATGAGATGGAGGAGGATCAGGAGGAGGAGACGCCACTGCCGCTGGCGCTGCCGTTGCGTCCGATTCCGACGGCGAAGCTGTTCGGAGTCTCGCTCGGGGTGAAGCGCCCGAGGAGAGACGAGGAGGAGGAGGGGGAAGATCAGGAGCGTCAAAACCAAGGGTGTGATGAGGTGGTGAAGCAAGAGCCGTCGGATGGGAGCTCAAAGCTCGAGAAGGAAGGTACGTGGCTGGAGCTACGGAAGTGA

Protein Analysis

356

Amino Acids

38.41

Weight (kDa)

4.79

Isoelectric Point (pI)

57.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 29 - 118 6.2e-31 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 463
Acc36I ACCTGC 1 cut(s) 463
AccB1I GGYRCC 1 cut(s) 517
AccBSI CCGCTC 1 cut(s) 589
AccII CGCG 1 cut(s) 386
AccIII TCCGGA 3 cut(s) 118, 267, 788
AclWI GGATC 4 cut(s) 110, 163, 291, 846
AcoI YGGCCR 4 cut(s) 176, 180, 501, 693
AcsI RAATTY 1 cut(s) 756
AcyI GRCGYC 4 cut(s) 80, 512, 518, 854
AfaI GTAC 3 cut(s) 279, 507, 1045
AfiI CCNNNNNNNGG 2 cut(s) 44, 1016
AgsI TTSAA 2 cut(s) 217, 313
AjnI CCWGG 1 cut(s) 545
Alw21I GWGCWC 1 cut(s) 1025
Alw26I GTCTC 6 cut(s) 445, 453, 790, 845, 916, 933
AlwI GGATC 4 cut(s) 110, 163, 291, 846
AlwNI CAGNNNCTG 1 cut(s) 552
Ama87I CYCGRG 4 cut(s) 682, 917, 931, 1031
Aor13HI TCCGGA 3 cut(s) 118, 267, 788
AoxI GGCC 7 cut(s) 35, 123, 176, 180, 501, 543, 693
ApeKI GCWGC 7 cut(s) 401, 404, 424, 535, 538, 552, 871
ApoI RAATTY 1 cut(s) 756
ArsI GACNNNNNNTTYG 2 cut(s) 70, 102
Asp700I GAANNNNTTC 1 cut(s) 902
AspLEI GCGC 4 cut(s) 351, 520, 871, 930
AspS9I GGNCC 3 cut(s) 16, 35, 543
AsuC2I CCSGG 2 cut(s) 39, 338
AsuHPI GGTGA 6 cut(s) 487, 538, 763, 806, 934, 1009
AvaI CYCGRG 4 cut(s) 682, 917, 931, 1031
AvaII GGWCC 1 cut(s) 16
BalI TGGCCA 1 cut(s) 695
BanI GGYRCC 1 cut(s) 517
BanII GRGCYC 1 cut(s) 1025
BauI CACGAG 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 1025
BbvI GCAGC 7 cut(s) 391, 411, 413, 522, 539, 550, 858
BccI CCATC 3 cut(s) 493, 823, 1010
BceAI ACGGC 8 cut(s) 40, 67, 488, 579, 767, 859, 909, 994
BciT130I CCWGG 1 cut(s) 547
BcnI CCSGG 2 cut(s) 39, 338
BcoDI GTCTC 6 cut(s) 445, 453, 790, 845, 916, 933
BfaI CTAG 1 cut(s) 575
BfmI CTRYAG 1 cut(s) 536
BfoI RGCGCY 4 cut(s) 352, 521, 872, 931
BfuAI ACCTGC 1 cut(s) 463
Bme1390I CCNGG 3 cut(s) 39, 338, 547
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 4 cut(s) 682, 917, 931, 1031
BmgT120I GGNCC 3 cut(s) 16, 35, 543
BmiI GGNNCC 2 cut(s) 36, 519
BmrFI CCNGG 3 cut(s) 39, 338, 547
BplI GAGNNNNNCTC 4 cut(s) 186, 218, 900, 932
BpmI CTGGAG 1 cut(s) 217
BpuMI CCSGG 2 cut(s) 39, 338
BsaAI YACGTR 1 cut(s) 1047
BsaHI GRCGYC 4 cut(s) 80, 512, 518, 854
BsaI GGTCTC 1 cut(s) 445
BsaJI CCNNGG 5 cut(s) 561, 658, 681, 932, 979
BsaWI WCCGGW 4 cut(s) 118, 267, 280, 788
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 1016
Bse118I RCCGGY 3 cut(s) 178, 514, 520
BseAI TCCGGA 3 cut(s) 118, 267, 788
BseBI CCWGG 1 cut(s) 547
BseDI CCNNGG 5 cut(s) 561, 658, 681, 932, 979
BseGI GGATG 3 cut(s) 724, 829, 1021
BseLI CCNNNNNNNGG 2 cut(s) 44, 1016
BseMII CTCAG 2 cut(s) 644, 776
BseX3I CGGCCG 2 cut(s) 176, 180
BseXI GCAGC 7 cut(s) 391, 411, 413, 522, 539, 550, 858
Bsh1236I CGCG 1 cut(s) 386
Bsh1285I CGRYCG 2 cut(s) 179, 183
BshFI GGCC 7 cut(s) 37, 125, 178, 182, 503, 545, 695
BshNI GGYRCC 1 cut(s) 517
BsiEI CGRYCG 2 cut(s) 179, 183
BsiHKAI GWGCWC 1 cut(s) 1025
BsiHKCI CYCGRG 4 cut(s) 682, 917, 931, 1031
BslFI GGGAC 1 cut(s) 699
BslI CCNNNNNNNGG 2 cut(s) 44, 1016
BsmAI GTCTC 6 cut(s) 445, 453, 790, 845, 916, 933
BsmBI CGTCTC 3 cut(s) 790, 845, 933
BsmFI GGGAC 1 cut(s) 699
BsnI GGCC 7 cut(s) 37, 125, 178, 182, 503, 545, 695
Bso31I GGTCTC 1 cut(s) 445
BsoBI CYCGRG 4 cut(s) 682, 917, 931, 1031
Bsp1286I GDGCHC 1 cut(s) 1025
Bsp13I TCCGGA 3 cut(s) 118, 267, 788
Bsp143I GATC 7 cut(s) 115, 135, 155, 283, 477, 838, 961
BspANI GGCC 7 cut(s) 37, 125, 178, 182, 503, 545, 695
BspCNI CTCAG 2 cut(s) 643, 775
BspEI TCCGGA 3 cut(s) 118, 267, 788
BspFNI CGCG 1 cut(s) 386
BspLI GGNNCC 2 cut(s) 36, 519
BspMAI CTGCAG 1 cut(s) 540
BspMI ACCTGC 1 cut(s) 463
BspPI GGATC 4 cut(s) 110, 163, 291, 846
BspT107I GGYRCC 1 cut(s) 517
BspTNI GGTCTC 1 cut(s) 445
BsrBI CCGCTC 1 cut(s) 589
BsrFI RCCGGY 3 cut(s) 178, 514, 520
BssAI RCCGGY 3 cut(s) 178, 514, 520
BssECI CCNNGG 5 cut(s) 561, 658, 681, 932, 979
BssMI GATC 7 cut(s) 115, 135, 155, 283, 477, 838, 961
BssNI GRCGYC 4 cut(s) 80, 512, 518, 854
BssSI CACGAG 1 cut(s) 139
BssT1I CCWWGG 2 cut(s) 658, 979
Bst2BI CACGAG 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 547
Bst4CI ACNGT 2 cut(s) 391, 690
BstACI GRCGYC 4 cut(s) 80, 512, 518, 854
BstBAI YACGTR 1 cut(s) 1047
BstC8I GCNNGC 5 cut(s) 180, 516, 522, 543, 867
BstDEI CTNAG 2 cut(s) 630, 762
BstDSI CCRYGG 1 cut(s) 561
BstF5I GGATG 3 cut(s) 724, 829, 1021
BstFNI CGCG 1 cut(s) 386
BstH2I RGCGCY 4 cut(s) 352, 521, 872, 931
BstHHI GCGC 4 cut(s) 351, 520, 871, 930
BstKTI GATC 7 cut(s) 118, 138, 158, 286, 480, 841, 964
BstMAI GTCTC 6 cut(s) 445, 453, 790, 845, 916, 933
BstMBI GATC 7 cut(s) 115, 135, 155, 283, 477, 838, 961
BstMCI CGRYCG 2 cut(s) 179, 183
BstNI CCWGG 1 cut(s) 547
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 3 cut(s) 37, 336, 545
BstSFI CTRYAG 1 cut(s) 536
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 7 cut(s) 391, 411, 413, 522, 539, 550, 858
BstZI CGGCCG 2 cut(s) 176, 180
BsuRI GGCC 7 cut(s) 37, 125, 178, 182, 503, 545, 695
BtgI CCRYGG 1 cut(s) 561
BtsCI GGATG 3 cut(s) 724, 829, 1021
BtsI GCAGTG 2 cut(s) 717, 857
BtsIMutI CAGTG 2 cut(s) 717, 857
BveI ACCTGC 1 cut(s) 463
Cac8I GCNNGC 5 cut(s) 180, 516, 522, 543, 867
CaiI CAGNNNCTG 1 cut(s) 552
CfoI GCGC 4 cut(s) 351, 520, 871, 930
Cfr10I RCCGGY 3 cut(s) 178, 514, 520
Cfr13I GGNCC 3 cut(s) 16, 35, 543
CseI GACGC 5 cut(s) 88, 520, 862, 869, 959
Csp6I GTAC 3 cut(s) 278, 506, 1044
CviAII CATG 2 cut(s) 607, 799
CviQI GTAC 3 cut(s) 278, 506, 1044
DdeI CTNAG 2 cut(s) 630, 762
DinI GGCGCC 1 cut(s) 519
DpnI GATC 7 cut(s) 117, 137, 157, 285, 479, 840, 963
DpnII GATC 7 cut(s) 115, 135, 155, 283, 477, 838, 961
EaeI YGGCCR 4 cut(s) 176, 180, 501, 693
EagI CGGCCG 2 cut(s) 176, 180
EciI GGCGGA 8 cut(s) 66, 168, 370, 581, 720, 726, 731, 830
Ecl136II GAGCTC 1 cut(s) 1023
EclXI CGGCCG 2 cut(s) 176, 180
Eco130I CCWWGG 2 cut(s) 658, 979
Eco24I GRGCYC 1 cut(s) 1025
Eco31I GGTCTC 1 cut(s) 445
Eco47I GGWCC 1 cut(s) 16
Eco52I CGGCCG 2 cut(s) 176, 180
Eco53kI GAGCTC 1 cut(s) 1023
Eco88I CYCGRG 4 cut(s) 682, 917, 931, 1031
EcoICRI GAGCTC 1 cut(s) 1023
EcoRII CCWGG 1 cut(s) 545
EcoT14I CCWWGG 2 cut(s) 658, 979
EcoT38I GRGCYC 1 cut(s) 1025
EgeI GGCGCC 1 cut(s) 519
EheI GGCGCC 1 cut(s) 519
ErhI CCWWGG 2 cut(s) 658, 979
Esp3I CGTCTC 3 cut(s) 790, 845, 933
FaeI CATG 2 cut(s) 610, 802
FaiI YATR 5 cut(s) 102, 134, 261, 608, 800
FaqI GGGAC 1 cut(s) 699
FatI CATG 2 cut(s) 606, 798
FauI CCCGC 2 cut(s) 534, 796
FokI GGATG 3 cut(s) 731, 836, 1028
FriOI GRGCYC 1 cut(s) 1025
FseI GGCCGGCC 1 cut(s) 182
FspBI CTAG 1 cut(s) 575
GlaI GCGC 4 cut(s) 350, 519, 870, 929
GsuI CTGGAG 1 cut(s) 217
HaeII RGCGCY 4 cut(s) 352, 521, 872, 931
HaeIII GGCC 7 cut(s) 37, 125, 178, 182, 503, 545, 695
HgaI GACGC 5 cut(s) 88, 520, 862, 869, 959
HhaI GCGC 4 cut(s) 351, 520, 871, 930
Hin1I GRCGYC 4 cut(s) 80, 512, 518, 854
Hin1II CATG 2 cut(s) 610, 802
Hin6I GCGC 4 cut(s) 349, 518, 869, 928
HinP1I GCGC 4 cut(s) 349, 518, 869, 928
HphI GGTGA 6 cut(s) 487, 538, 763, 806, 934, 1009
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 5 cut(s) 78, 885, 891, 908, 1015
Hpy188III TCNNGA 7 cut(s) 119, 268, 684, 789, 842, 965, 1033
Hpy8I GTNNAC 1 cut(s) 112
Hpy99I CGWCG 9 cut(s) 82, 131, 370, 391, 470, 496, 514, 895, 1015
HpyAV CCTTC 5 cut(s) 143, 265, 592, 1030, 1034
HpyCH4III ACNGT 2 cut(s) 391, 690
HpyCH4IV ACGT 3 cut(s) 98, 530, 1046
HpyCH4V TGCA 3 cut(s) 538, 555, 610
HpyF3I CTNAG 2 cut(s) 630, 762
HpySE526I ACGT 3 cut(s) 98, 530, 1046
Hsp92I GRCGYC 4 cut(s) 80, 512, 518, 854
Hsp92II CATG 2 cut(s) 610, 802
HspAI GCGC 4 cut(s) 349, 518, 869, 928
KasI GGCGCC 1 cut(s) 517
Kpn2I TCCGGA 3 cut(s) 118, 267, 788
KroI GCCGGC 3 cut(s) 178, 514, 520
KroNI GCCGGC 3 cut(s) 180, 516, 522
Kzo9I GATC 7 cut(s) 115, 135, 155, 283, 477, 838, 961
LmnI GCTCC 6 cut(s) 144, 549, 707, 967, 1020, 1054
Lsp1109I GCAGC 7 cut(s) 391, 411, 413, 522, 539, 550, 858
MaeI CTAG 1 cut(s) 575
MaeII ACGT 3 cut(s) 98, 530, 1046
MaeIII GTNAC 4 cut(s) 409, 526, 647, 794
MalI GATC 7 cut(s) 117, 137, 157, 285, 479, 840, 963
MbiI CCGCTC 1 cut(s) 589
MboI GATC 7 cut(s) 115, 135, 155, 283, 477, 838, 961
MboII GAAGA 1 cut(s) 971
MhlI GDGCHC 1 cut(s) 1025
MlsI TGGCCA 1 cut(s) 695
MluCI AATT 1 cut(s) 756
MluNI TGGCCA 1 cut(s) 695
Mly113I GGCGCC 1 cut(s) 518
MlyI GAGTC 3 cut(s) 324, 622, 918
MmeI TCCRAC 4 cut(s) 101, 510, 914, 993
Mox20I TGGCCA 1 cut(s) 695
MreI CGCCGGCG 2 cut(s) 514, 520
MroI TCCGGA 3 cut(s) 118, 267, 788
MroNI GCCGGC 3 cut(s) 178, 514, 520
MroXI GAANNNNTTC 1 cut(s) 902
MscI TGGCCA 1 cut(s) 695
MseI TTAA 1 cut(s) 614
Msp20I TGGCCA 1 cut(s) 695
MspA1I CMGCKG 4 cut(s) 404, 416, 541, 865
MspR9I CCNGG 3 cut(s) 39, 338, 547
MvaI CCWGG 1 cut(s) 547
MvnI CGCG 1 cut(s) 386
NaeI GCCGGC 3 cut(s) 180, 516, 522
NarI GGCGCC 1 cut(s) 518
NciI CCSGG 2 cut(s) 39, 338
NdeII GATC 7 cut(s) 115, 135, 155, 283, 477, 838, 961
NgoMIV GCCGGC 3 cut(s) 178, 514, 520
NlaIII CATG 2 cut(s) 610, 802
NlaIV GGNNCC 2 cut(s) 36, 519
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 2 cut(s) 526, 794
NspI RCATGY 1 cut(s) 610
PaeR7I CTCGAG 1 cut(s) 1031
PaqCI CACCTGC 1 cut(s) 463
PcsI WCGNNNNNNNCGW 2 cut(s) 68, 488
PdiI GCCGGC 3 cut(s) 180, 516, 522
PdmI GAANNNNTTC 1 cut(s) 902
PfeI GAWTC 7 cut(s) 29, 59, 73, 264, 343, 809, 886
PfoI TCCNGGA 1 cut(s) 336
PleI GAGTC 3 cut(s) 324, 622, 917
PluTI GGCGCC 1 cut(s) 521
PpsI GAGTC 3 cut(s) 324, 622, 917
Ppu21I YACGTR 1 cut(s) 1047
Psp124BI GAGCTC 1 cut(s) 1025
Psp6I CCWGG 1 cut(s) 545
PspGI CCWGG 1 cut(s) 545
PspN4I GGNNCC 2 cut(s) 36, 519
PspPI GGNCC 3 cut(s) 16, 35, 543
PstI CTGCAG 1 cut(s) 540
PstNI CAGNNNCTG 1 cut(s) 552
PvuII CAGCTG 1 cut(s) 404
RigI GGCCGGCC 1 cut(s) 182
RsaI GTAC 3 cut(s) 279, 507, 1045
RsaNI GTAC 3 cut(s) 278, 506, 1044
SacI GAGCTC 1 cut(s) 1025
SaqAI TTAA 1 cut(s) 614
Sau3AI GATC 7 cut(s) 115, 135, 155, 283, 477, 838, 961
Sau96I GGNCC 3 cut(s) 16, 35, 543
SchI GAGTC 3 cut(s) 324, 622, 918
ScrFI CCNGG 3 cut(s) 39, 338, 547
SduI GDGCHC 1 cut(s) 1025
SfcI CTRYAG 1 cut(s) 536
SfoI GGCGCC 1 cut(s) 519
Sfr274I CTCGAG 1 cut(s) 1031
SgrAI CRCCGGYG 2 cut(s) 514, 520
SinI GGWCC 1 cut(s) 16
SlaI CTCGAG 1 cut(s) 1031
SmlI CTYRAG 1 cut(s) 1031
SmoI CTYRAG 1 cut(s) 1031
Sse9I AATT 1 cut(s) 756
SspDI GGCGCC 1 cut(s) 517
SspMI CTAG 1 cut(s) 575
SstI GAGCTC 1 cut(s) 1025
StyD4I CCNGG 3 cut(s) 37, 336, 545
StyI CCWWGG 2 cut(s) 658, 979
TaaI ACNGT 2 cut(s) 391, 690
TaiI ACGT 3 cut(s) 101, 533, 1049
TaqI TCGA 2 cut(s) 158, 1032
TasI AATT 1 cut(s) 756
TfiI GAWTC 7 cut(s) 29, 59, 73, 264, 343, 809, 886
Tru1I TTAA 1 cut(s) 614
Tru9I TTAA 1 cut(s) 614
TscAI CASTG 2 cut(s) 717, 864
TseFI GTSAC 2 cut(s) 526, 794
TseI GCWGC 7 cut(s) 401, 404, 424, 535, 538, 552, 871
Tsp45I GTSAC 2 cut(s) 526, 794
TspDTI ATGAA 1 cut(s) 734
TspGWI ACGGA 1 cut(s) 354
TspRI CASTG 2 cut(s) 717, 864
VpaK11BI GGWCC 1 cut(s) 16
XapI RAATTY 1 cut(s) 756
XceI RCATGY 1 cut(s) 610
XhoI CTCGAG 1 cut(s) 1031
XmnI GAANNNNTTC 1 cut(s) 902
XspI CTAG 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.