Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005627

Physical Location & Seq

Genomic Coordinates Reverse (-)

10330283 .. 10332551

Gene Structure 2269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G093200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCGTCGTTGCAGGCCGACCAGAACGGCGACTCCGGCCCGGTTAACGGCGCTGGAGGAGGTGGAGACTCACAAAGGACGCTTCCGACGCCGTTTTTGACCAAAACGTATCAGCTGGTGGACGATCCGTCCGTCGACGATTTGATCTCGTGGAGCGAAGACGGATCGGCCTTCATAGTCTGGCGACCCGCCGAATTCGCCAGAGATTTGCTCCCCAAGTATTTCAAGCATAACAACTTCTCCAGCTTCGTCCGCCAGCTCAACACTTACGGATTTCGGAAAGTTGTGCCGGATCGGTGGGAGTTCGCGAACGATTGCTTCAAAAGAGGTGAGAAAGGCCTCCTACGGGAGATTCAGCGCCGGAAAATCTCGCCGTCGGTGTCGGCGTCGCCTGCGGCGATTACCGCTACGTTGGCGACGGTATCTGTGGTGGCTCCCGGGGTATCTCCGTCGAACTCCGGCGACGAGCAAGTGATCTCGTCGAACTCGTCGCCGGTGGCGCCTCCGGCTACGATGTTGAGCCGAATCCGGAGCTGCACCACCACGTCGGACGTTCTGGAAGAGAACGAGCGGCTCAGGAAAGAGAACATGCAGCTAAGTCACGAGCTGACTCAGCTGCGCGGCTTGTGCAACAATATATTGGCTTTGATGACGAACTACGCTTCTGGTCAGTTGGAGGGCGGCGGCGGTGGCGGTGGGAGTGTAATGGATGAGGGTAAGCCTCTGGAGCTGTCGCCGGTGCAGGAGGCTGAGCCGTCTGAAAATGGTGTCGTTCGCGAGGGGTCTAAGGCGGAGGCTTCGGCGGAGGAAGAGGAAGACGAGGAGGAGGAGACGAGGCCGAGGCTATTTGGGGTGTCCATTGGGGTGAAGCGCGTGCGGAGAGACGAGGAGGAAGAGGAGCAGCATCGGGAAGGGTCTGAGGCGATGAAATCAGAGCCGTCAGATGGGAGTTCGAAGCGCGATCAGGACTCCACGTGGCTGGAGCTCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0042493 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

332

Amino Acids

36.07

Weight (kDa)

4.75

Isoelectric Point (pI)

64.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11660
fragaria_vesca	FvH4_5g01770 FvH4_5g01770 FvH4_5g01770 FvH4_5g01770 FvH4_5g01770 FvH4_5g01770
malus_domestica	MD04G1064700.v1.1
prunus_persica	Prupe.5G093200_v2.0.a1 Prupe.5G093200_v2.0.a1 Prupe.5G093200_v2.0.a1 Prupe.5G093200_v2.0.a1 Prupe.5G093200_v2.0.a1
pyrus_communis	pycom04g05850 pycom17g23290
rosa_chinensis	RchiOBHm_Chr7g0198941
rosa_laevigata	RLG00000003831
rosa_multiflora	Rmu_sc0006266.1_g000015 Rmu_sc0042306.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257300
rosa_rugosa	Rorug07G0051100 Rorug07G0051200 Rorug07G0051300
rosa_samantha	Rh7AG174600 Rh7BG177800 Rh7CG183800 Rh7DG177200
rosa_wichuraiana	Rw7G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	499
AccBSI	CCGCTC	1 cut(s)	571
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	5 cut(s)	308, 621, 777, 873, 960
AccIII	TCCGGA	1 cut(s)	528
AclWI	GGATC	3 cut(s)	119, 172, 300
AcsI	RAATTY	1 cut(s)	194
AcvI	CACGTG	1 cut(s)	975
AcyI	GRCGYC	4 cut(s)	5, 89, 386, 500
AfiI	CCNNNNNNNGG	3 cut(s)	47, 346, 944
AgsI	TTSAA	2 cut(s)	226, 322
AhdI	GACNNNNNGTC	1 cut(s)	127
AjiI	CACGTC	1 cut(s)	546
AloI	GAACNNNNNNTCC	2 cut(s)	17, 49
AluBI	AGCT	9 cut(s)	115, 246, 259, 534, 595, 607, 616, 730, 985
AluI	AGCT	9 cut(s)	115, 246, 259, 534, 595, 607, 616, 730, 985
Alw21I	GWGCWC	1 cut(s)	987
Alw26I	GTCTC	3 cut(s)	60, 824, 876
AlwI	GGATC	3 cut(s)	119, 172, 300
Ama87I	CYCGRG	1 cut(s)	437
Aor13HI	TCCGGA	1 cut(s)	528
AoxI	GGCC	5 cut(s)	15, 37, 168, 337, 836
ApeKI	GCWGC	4 cut(s)	534, 592, 616, 901
ApoI	RAATTY	1 cut(s)	194
ArsI	GACNNNNNNTTYG	2 cut(s)	79, 111
AspLEI	GCGC	6 cut(s)	53, 360, 502, 621, 873, 960
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	3 cut(s)	41, 438, 439
AsuHPI	GGTGA	2 cut(s)	341, 877
AsuII	TTCGAA	1 cut(s)	953
AvaI	CYCGRG	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	499
BanII	GRGCYC	1 cut(s)	987
BauI	CACGAG	2 cut(s)	148, 602
BbrPI	CACGTG	1 cut(s)	975
BbsI	GAAGAC	2 cut(s)	165, 822
Bbv12I	GWGCWC	1 cut(s)	987
BbvI	GCAGC	4 cut(s)	521, 603, 604, 913
BccI	CCATC	1 cut(s)	938
BceAI	ACGGC	6 cut(s)	43, 64, 76, 358, 739, 922
BcnI	CCSGG	3 cut(s)	41, 438, 439
BcoDI	GTCTC	3 cut(s)	60, 824, 876
BfoI	RGCGCY	3 cut(s)	54, 361, 503
BisI	GCNGC	9 cut(s)	396, 535, 572, 593, 617, 622, 682, 685, 902
BlpI	GCTNAGC	1 cut(s)	750
BlsI	GCNGC	9 cut(s)	397, 536, 573, 594, 618, 623, 683, 686, 903
Bme1390I	CCNGG	3 cut(s)	41, 438, 439
BmeRI	GACNNNNNGTC	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	437
BmgBI	CACGTC	1 cut(s)	546
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	2 cut(s)	435, 501
BmrFI	CCNGG	3 cut(s)	41, 438, 439
BmsI	GCATC	1 cut(s)	913
BpiI	GAAGAC	2 cut(s)	165, 822
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
BpmI	CTGGAG	3 cut(s)	75, 226, 746
Bpu10I	CCTNAGC	1 cut(s)	575
Bpu1102I	GCTNAGC	1 cut(s)	750
Bpu14I	TTCGAA	1 cut(s)	953
BpuMI	CCSGG	3 cut(s)	41, 438, 439
BsaAI	YACGTR	1 cut(s)	975
BsaHI	GRCGYC	4 cut(s)	5, 89, 386, 500
BsaJI	CCNNGG	3 cut(s)	437, 438, 839
BsaWI	WCCGGW	1 cut(s)	528
BsaXI	ACNNNNNCTCC	4 cut(s)	17, 47, 224, 254
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 346, 944
Bse118I	RCCGGY	2 cut(s)	493, 736
BseAI	TCCGGA	1 cut(s)	528
BseDI	CCNNGG	3 cut(s)	437, 438, 839
BseGI	GGATG	1 cut(s)	715
BseLI	CCNNNNNNNGG	3 cut(s)	47, 346, 944
BseMII	CTCAG	4 cut(s)	589, 626, 741, 909
BseRI	GAGGAG	6 cut(s)	72, 836, 839, 842, 902, 911
BseXI	GCAGC	4 cut(s)	521, 603, 604, 913
BsgI	GTGCAG	2 cut(s)	520, 761
Bsh1236I	CGCG	5 cut(s)	308, 621, 777, 873, 960
BshFI	GGCC	5 cut(s)	17, 39, 170, 339, 838
BshNI	GGYRCC	1 cut(s)	499
BsiHKAI	GWGCWC	1 cut(s)	987
BsiHKCI	CYCGRG	1 cut(s)	437
BslI	CCNNNNNNNGG	3 cut(s)	47, 346, 944
BsmAI	GTCTC	3 cut(s)	60, 824, 876
BsmBI	CGTCTC	2 cut(s)	824, 876
BsnI	GGCC	5 cut(s)	17, 39, 170, 339, 838
BsoBI	CYCGRG	1 cut(s)	437
Bsp119I	TTCGAA	1 cut(s)	953
Bsp1286I	GDGCHC	1 cut(s)	987
Bsp13I	TCCGGA	1 cut(s)	528
Bsp143I	GATC	6 cut(s)	124, 144, 164, 292, 474, 961
Bsp1720I	GCTNAGC	1 cut(s)	750
Bsp68I	TCGCGA	2 cut(s)	308, 777
BspANI	GGCC	5 cut(s)	17, 39, 170, 339, 838
BspCNI	CTCAG	4 cut(s)	588, 625, 742, 910
BspEI	TCCGGA	1 cut(s)	528
BspFNI	CGCG	5 cut(s)	308, 621, 777, 873, 960
BspLI	GGNNCC	2 cut(s)	435, 501
BspPI	GGATC	3 cut(s)	119, 172, 300
BspT104I	TTCGAA	1 cut(s)	953
BspT107I	GGYRCC	1 cut(s)	499
BsrBI	CCGCTC	1 cut(s)	571
BsrFI	RCCGGY	2 cut(s)	493, 736
BssAI	RCCGGY	2 cut(s)	493, 736
BssECI	CCNNGG	3 cut(s)	437, 438, 839
BssMI	GATC	6 cut(s)	124, 144, 164, 292, 474, 961
BssNI	GRCGYC	4 cut(s)	5, 89, 386, 500
BssSI	CACGAG	2 cut(s)	148, 602
Bst2BI	CACGAG	2 cut(s)	148, 602
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	3 cut(s)	555, 804, 888
BstACI	GRCGYC	4 cut(s)	5, 89, 386, 500
BstBAI	YACGTR	1 cut(s)	975
BstBI	TTCGAA	1 cut(s)	953
BstC8I	GCNNGC	4 cut(s)	15, 257, 393, 875
BstDEI	CTNAG	6 cut(s)	575, 596, 612, 750, 786, 918
BstF5I	GGATG	1 cut(s)	715
BstFNI	CGCG	5 cut(s)	308, 621, 777, 873, 960
BstH2I	RGCGCY	3 cut(s)	54, 361, 503
BstHHI	GCGC	6 cut(s)	53, 360, 502, 621, 873, 960
BstKTI	GATC	6 cut(s)	127, 147, 167, 295, 477, 964
BstMAI	GTCTC	3 cut(s)	60, 824, 876
BstMBI	GATC	6 cut(s)	124, 144, 164, 292, 474, 961
BstNSI	RCATGY	1 cut(s)	592
BstSCI	CCNGG	3 cut(s)	39, 436, 437
BstUI	CGCG	5 cut(s)	308, 621, 777, 873, 960
BstV1I	GCAGC	4 cut(s)	521, 603, 604, 913
BstV2I	GAAGAC	2 cut(s)	165, 822
BstXI	CCANNNNNNTGG	1 cut(s)	979
BsuRI	GGCC	5 cut(s)	17, 39, 170, 339, 838
BtgZI	GCGATG	1 cut(s)	938
BtrI	CACGTC	1 cut(s)	546
BtsCI	GGATG	1 cut(s)	715
BtuMI	TCGCGA	2 cut(s)	308, 777
Cac8I	GCNNGC	4 cut(s)	15, 257, 393, 875
CfoI	GCGC	6 cut(s)	53, 360, 502, 621, 873, 960
Cfr10I	RCCGGY	2 cut(s)	493, 736
Cfr13I	GGNCC	1 cut(s)	38
Cfr9I	CCCGGG	1 cut(s)	437
CseI	GACGC	3 cut(s)	88, 97, 375
CviAII	CATG	1 cut(s)	589
DdeI	CTNAG	6 cut(s)	575, 596, 612, 750, 786, 918
DinI	GGCGCC	1 cut(s)	501
DpnI	GATC	6 cut(s)	126, 146, 166, 294, 476, 963
DpnII	GATC	6 cut(s)	124, 144, 164, 292, 474, 961
DriI	GACNNNNNGTC	1 cut(s)	127
Eam1104I	CTCTTC	3 cut(s)	555, 804, 888
Eam1105I	GACNNNNNGTC	1 cut(s)	127
EarI	CTCTTC	3 cut(s)	555, 804, 888
EciI	GGCGGA	3 cut(s)	242, 806, 818
Ecl136II	GAGCTC	1 cut(s)	985
Eco147I	AGGCCT	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	987
Eco53kI	GAGCTC	1 cut(s)	985
Eco72I	CACGTG	1 cut(s)	975
Eco88I	CYCGRG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	985
EcoRI	GAATTC	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	987
EgeI	GGCGCC	1 cut(s)	501
EheI	GGCGCC	1 cut(s)	501
Esp3I	CGTCTC	2 cut(s)	824, 876
FaeI	CATG	1 cut(s)	592
FaiI	YATR	4 cut(s)	176, 231, 590, 638
FatI	CATG	1 cut(s)	588
FauI	CCCGC	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	9 cut(s)	396, 535, 572, 593, 617, 622, 682, 685, 902
FokI	GGATG	1 cut(s)	722
FriOI	GRGCYC	1 cut(s)	987
Fsp4HI	GCNGC	9 cut(s)	396, 535, 572, 593, 617, 622, 682, 685, 902
GlaI	GCGC	6 cut(s)	52, 359, 501, 620, 872, 959
GluI	GCNGC	9 cut(s)	396, 535, 572, 593, 617, 622, 682, 685, 902
GsuI	CTGGAG	3 cut(s)	75, 226, 746
HaeII	RGCGCY	3 cut(s)	54, 361, 503
HaeIII	GGCC	5 cut(s)	17, 39, 170, 339, 838
HgaI	GACGC	3 cut(s)	88, 97, 375
HhaI	GCGC	6 cut(s)	53, 360, 502, 621, 873, 960
Hin1I	GRCGYC	4 cut(s)	5, 89, 386, 500
Hin1II	CATG	1 cut(s)	592
Hin6I	GCGC	6 cut(s)	51, 358, 500, 619, 871, 958
HinP1I	GCGC	6 cut(s)	51, 358, 500, 619, 871, 958
HincII	GTYRAC	2 cut(s)	46, 136
HindII	GTYRAC	2 cut(s)	46, 136
HinfI	GANTC	6 cut(s)	32, 68, 352, 525, 610, 968
HpaI	GTTAAC	1 cut(s)	46
HphI	GGTGA	2 cut(s)	341, 877
Hpy166II	GTNNAC	3 cut(s)	46, 121, 136
Hpy188I	TCNGA	8 cut(s)	87, 279, 550, 760, 919, 934, 943, 989
Hpy188III	TCNNGA	9 cut(s)	307, 529, 557, 577, 602, 725, 776, 908, 965
Hpy8I	GTNNAC	3 cut(s)	46, 121, 136
HpyAV	CCTTC	2 cut(s)	181, 905
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	5 cut(s)	107, 410, 545, 552, 974
HpyCH4V	TGCA	5 cut(s)	13, 537, 592, 630, 742
HpyF3I	CTNAG	6 cut(s)	575, 596, 612, 750, 786, 918
HpySE526I	ACGT	5 cut(s)	107, 410, 545, 552, 974
Hsp92I	GRCGYC	4 cut(s)	5, 89, 386, 500
Hsp92II	CATG	1 cut(s)	592
HspAI	GCGC	6 cut(s)	51, 358, 500, 619, 871, 958
KasI	GGCGCC	1 cut(s)	499
Kpn2I	TCCGGA	1 cut(s)	528
KspAI	GTTAAC	1 cut(s)	46
Kzo9I	GATC	6 cut(s)	124, 144, 164, 292, 474, 961
LmnI	GCTCC	7 cut(s)	153, 216, 439, 531, 727, 898, 982
Lsp1109I	GCAGC	4 cut(s)	521, 603, 604, 913
LweI	GCATC	1 cut(s)	913
MaeII	ACGT	5 cut(s)	107, 410, 545, 552, 974
MaeIII	GTNAC	1 cut(s)	599
MalI	GATC	6 cut(s)	126, 146, 166, 294, 476, 963
MbiI	CCGCTC	1 cut(s)	571
MboI	GATC	6 cut(s)	124, 144, 164, 292, 474, 961
MboII	GAAGA	5 cut(s)	170, 572, 821, 827, 905
MhlI	GDGCHC	1 cut(s)	987
MluCI	AATT	1 cut(s)	194
Mly113I	GGCGCC	1 cut(s)	500
MlyI	GAGTC	4 cut(s)	26, 62, 604, 962
MmeI	TCCRAC	3 cut(s)	110, 528, 654
MroI	TCCGGA	1 cut(s)	528
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	863
MspA1I	CMGCKG	2 cut(s)	115, 616
MspR9I	CCNGG	3 cut(s)	41, 438, 439
MvnI	CGCG	5 cut(s)	308, 621, 777, 873, 960
NarI	GGCGCC	1 cut(s)	500
NciI	CCSGG	3 cut(s)	41, 438, 439
NdeII	GATC	6 cut(s)	124, 144, 164, 292, 474, 961
NlaIII	CATG	1 cut(s)	592
NlaIV	GGNNCC	2 cut(s)	435, 501
NmeAIII	GCCGAG	1 cut(s)	864
NmuCI	GTSAC	1 cut(s)	599
NruI	TCGCGA	2 cut(s)	308, 777
NspI	RCATGY	1 cut(s)	592
NspV	TTCGAA	1 cut(s)	953
PceI	AGGCCT	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	4 cut(s)	129, 383, 395, 485
PfeI	GAWTC	2 cut(s)	352, 525
PkrI	GCNGC	9 cut(s)	397, 536, 573, 594, 618, 623, 683, 686, 903
PleI	GAGTC	4 cut(s)	26, 62, 604, 962
PluTI	GGCGCC	1 cut(s)	503
PmaCI	CACGTG	1 cut(s)	975
PmlI	CACGTG	1 cut(s)	975
PpsI	GAGTC	4 cut(s)	26, 62, 604, 962
Ppu21I	YACGTR	1 cut(s)	975
Psp124BI	GAGCTC	1 cut(s)	987
PspCI	CACGTG	1 cut(s)	975
PspN4I	GGNNCC	2 cut(s)	435, 501
PspPI	GGNCC	1 cut(s)	38
PvuII	CAGCTG	2 cut(s)	115, 616
RruI	TCGCGA	2 cut(s)	308, 777
RseI	CAYNNNNRTG	1 cut(s)	863
SacI	GAGCTC	1 cut(s)	987
SalI	GTCGAC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	9 cut(s)	396, 535, 572, 593, 617, 622, 682, 685, 902
Sau3AI	GATC	6 cut(s)	124, 144, 164, 292, 474, 961
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	4 cut(s)	26, 62, 604, 962
ScrFI	CCNGG	3 cut(s)	41, 438, 439
SduI	GDGCHC	1 cut(s)	987
SfaNI	GCATC	1 cut(s)	913
SfoI	GGCGCC	1 cut(s)	501
SfuI	TTCGAA	1 cut(s)	953
SgrAI	CRCCGGYG	2 cut(s)	493, 736
SgrDI	CGTCGACG	1 cut(s)	134
SmaI	CCCGGG	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	863
Sse9I	AATT	1 cut(s)	194
SseBI	AGGCCT	1 cut(s)	339
SspDI	GGCGCC	1 cut(s)	499
SstI	GAGCTC	1 cut(s)	987
StuI	AGGCCT	1 cut(s)	339
StyD4I	CCNGG	3 cut(s)	39, 436, 437
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	5 cut(s)	110, 413, 548, 555, 977
TaqI	TCGA	4 cut(s)	135, 452, 482, 953
TasI	AATT	1 cut(s)	194
TauI	GCSGC	5 cut(s)	398, 574, 624, 684, 687
TfiI	GAWTC	2 cut(s)	352, 525
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	599
TseI	GCWGC	4 cut(s)	534, 592, 616, 901
Tsp45I	GTSAC	1 cut(s)	599
TspDTI	ATGAA	2 cut(s)	163, 941
TspGWI	ACGGA	5 cut(s)	117, 121, 177, 285, 438
TspMI	CCCGGG	1 cut(s)	437
XapI	RAATTY	1 cut(s)	194
XceI	RCATGY	1 cut(s)	592
XmaI	CCCGGG	1 cut(s)	437
XmiI	GTMKAC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.