Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005627

Physical Location & Seq

Genomic Coordinates Reverse (-)

3672860 .. 3673420

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0051100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCAAAATAGATTGCAGAAATTGGAGTGCATACACACATCGTACTGTTCTTCTCTGGAAGAGATTTTTGAATTTAGAAGATTGACTGTCGATGATGAAGGGGATGCTGCTGCTTTAACAATTTCTGAGTCAAGGAATCAATCTCGTCAAGCATTTCAGAATCTTAGAGAGATATCAATTTTTTCTTGTGAAAGTTTGAGAACTCTGCTCTCTCCCTCAATTGCCAGAGGTCTTGTGAAGCTCCAAAGACTAAAGATAAAAGACTGCGAGAAGATTGAAGAAATAGTAGCAGCAGCAGAGGGTGAAGAAACAGAGGATGACAACTTGTTCCCTCAGCTATGTACTTTGACTCTTGAGGATCTACCAAATCTCTCAAGCTTTTCGCAAGGCAGATATAATTTCAAATGGCCACTAGTGAAAGACATAAAAGTCCTCAAATGCTACAATATGAAGAGGTTTTGTTTAGGATCCCTCAGCACACCAAAGGAAGTGAAAATAGATGTCCAAGGTGCCAGTAAGAGTGTTTTGCAGGTGCTCAATAACAGTAGAAACAGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0042493 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

186

Amino Acids

21.24

Weight (kDa)

6.62

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_RPS2	PF23247	46 - 90	1.1e-10	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11660
fragaria_vesca	FvH4_5g01770 FvH4_5g01770 FvH4_5g01770 FvH4_5g01770 FvH4_5g01770 FvH4_5g01770
malus_domestica	MD04G1064700.v1.1
prunus_persica	Prupe.5G093200_v2.0.a1 Prupe.5G093200_v2.0.a1 Prupe.5G093200_v2.0.a1 Prupe.5G093200_v2.0.a1 Prupe.5G093200_v2.0.a1
pyrus_communis	pycom04g05850 pycom17g23290
rosa_chinensis	RchiOBHm_Chr7g0198941
rosa_laevigata	RLG00000003831
rosa_multiflora	Rmu_sc0006266.1_g000015 Rmu_sc0042306.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257300
rosa_rugosa	Rorug07G0051100 Rorug07G0051200 Rorug07G0051300
rosa_samantha	Rh7AG174600 Rh7BG177800 Rh7CG183800 Rh7DG177200
rosa_wichuraiana	Rw7G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	520
AasI	GACNNNNNNGTC	1 cut(s)	428
Acc36I	ACCTGC	1 cut(s)	520
AccB1I	GGYRCC	1 cut(s)	509
AclWI	GGATC	3 cut(s)	366, 462, 475
AcoI	YGGCCR	1 cut(s)	407
AcsI	RAATTY	1 cut(s)	71
AfaI	GTAC	2 cut(s)	44, 343
AgsI	TTSAA	3 cut(s)	71, 278, 403
AhlI	ACTAGT	1 cut(s)	412
AluBI	AGCT	3 cut(s)	241, 337, 378
AluI	AGCT	3 cut(s)	241, 337, 378
Alw21I	GWGCWC	1 cut(s)	537
AlwI	GGATC	3 cut(s)	366, 462, 475
AlwNI	CAGNNNCTG	1 cut(s)	558
AoxI	GGCC	1 cut(s)	407
ApeKI	GCWGC	4 cut(s)	107, 110, 290, 293
ApoI	RAATTY	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	409
BamHI	GGATCC	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	537
BbvCI	CCTCAGC	2 cut(s)	333, 473
BbvI	GCAGC	4 cut(s)	94, 97, 302, 305
BcuI	ACTAGT	1 cut(s)	412
BfaI	CTAG	1 cut(s)	413
BfuAI	ACCTGC	1 cut(s)	520
BisI	GCNGC	4 cut(s)	108, 111, 291, 294
BlsI	GCNGC	4 cut(s)	109, 112, 292, 295
BmiI	GGNNCC	2 cut(s)	469, 511
BmsI	GCATC	1 cut(s)	94
Bpu10I	CCTNAGC	2 cut(s)	333, 473
BpuEI	CTTGAG	2 cut(s)	358, 374
BsaJI	CCNNGG	1 cut(s)	505
Bse1I	ACTGG	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	505
BseGI	GGATG	2 cut(s)	109, 322
BseMII	CTCAG	3 cut(s)	117, 347, 487
BseNI	ACTGG	1 cut(s)	513
BseXI	GCAGC	4 cut(s)	94, 97, 302, 305
BshFI	GGCC	1 cut(s)	409
BshNI	GGYRCC	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	537
BsnI	GGCC	1 cut(s)	409
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	2 cut(s)	358, 467
BspANI	GGCC	1 cut(s)	409
BspCNI	CTCAG	3 cut(s)	118, 346, 486
BspLI	GGNNCC	2 cut(s)	469, 511
BspMI	ACCTGC	1 cut(s)	520
BspPI	GGATC	3 cut(s)	366, 462, 475
BspT107I	GGYRCC	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	513
BssECI	CCNNGG	1 cut(s)	505
BssMI	GATC	2 cut(s)	358, 467
BssT1I	CCWWGG	1 cut(s)	505
Bst4CI	ACNGT	3 cut(s)	47, 88, 545
Bst6I	CTCTTC	2 cut(s)	54, 446
BstDEI	CTNAG	4 cut(s)	126, 164, 333, 473
BstF5I	GGATG	2 cut(s)	109, 322
BstKTI	GATC	2 cut(s)	361, 470
BstMBI	GATC	2 cut(s)	358, 467
BstV1I	GCAGC	4 cut(s)	94, 97, 302, 305
BstX2I	RGATCY	2 cut(s)	358, 467
BstYI	RGATCY	2 cut(s)	358, 467
BsuRI	GGCC	1 cut(s)	409
BtsCI	GGATG	2 cut(s)	109, 322
BveI	ACCTGC	1 cut(s)	520
CaiI	CAGNNNCTG	1 cut(s)	558
Csp6I	GTAC	2 cut(s)	43, 342
CviJI	RGCY	4 cut(s)	241, 337, 378, 409
CviKI_1	RGCY	4 cut(s)	241, 337, 378, 409
CviQI	GTAC	2 cut(s)	43, 342
DdeI	CTNAG	4 cut(s)	126, 164, 333, 473
DpnI	GATC	2 cut(s)	360, 469
DpnII	GATC	2 cut(s)	358, 467
DrdI	GACNNNNNNGTC	1 cut(s)	428
DseDI	GACNNNNNNGTC	1 cut(s)	428
EaeI	YGGCCR	1 cut(s)	407
Eam1104I	CTCTTC	2 cut(s)	54, 446
EarI	CTCTTC	2 cut(s)	54, 446
Eco130I	CCWWGG	1 cut(s)	505
Eco32I	GATATC	1 cut(s)	174
EcoRV	GATATC	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	505
FaiI	YATR	5 cut(s)	32, 340, 396, 425, 449
Fnu4HI	GCNGC	4 cut(s)	108, 111, 291, 294
FokI	GGATG	2 cut(s)	116, 329
Fsp4HI	GCNGC	4 cut(s)	108, 111, 291, 294
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	4 cut(s)	108, 111, 291, 294
HaeIII	GGCC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	376
HinfI	GANTC	5 cut(s)	128, 136, 160, 349, 555
HphI	GGTGA	1 cut(s)	314
Hpy188I	TCNGA	3 cut(s)	127, 159, 560
Hpy188III	TCNNGA	2 cut(s)	56, 353
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	3 cut(s)	47, 88, 545
HpyCH4V	TGCA	4 cut(s)	4, 16, 30, 529
HpyF3I	CTNAG	4 cut(s)	126, 164, 333, 473
Kzo9I	GATC	2 cut(s)	358, 467
LmnI	GCTCC	1 cut(s)	246
LpnPI	CCDG	4 cut(s)	41, 238, 515, 526
Lsp1109I	GCAGC	4 cut(s)	94, 97, 302, 305
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	413
MalI	GATC	2 cut(s)	360, 469
MboI	GATC	2 cut(s)	358, 467
MboII	GAAGA	7 cut(s)	42, 71, 90, 283, 290, 317, 463
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	2 cut(s)	358, 467
MhlI	GDGCHC	1 cut(s)	537
MlsI	TGGCCA	1 cut(s)	409
MluCI	AATT	6 cut(s)	20, 71, 120, 177, 219, 397
MluNI	TGGCCA	1 cut(s)	409
MlyI	GAGTC	2 cut(s)	137, 343
MnlI	CCTC	9 cut(s)	221, 226, 292, 307, 342, 349, 443, 447, 482
Mox20I	TGGCCA	1 cut(s)	409
MscI	TGGCCA	1 cut(s)	409
MseI	TTAA	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	409
MunI	CAATTG	1 cut(s)	219
NdeII	GATC	2 cut(s)	358, 467
NlaIV	GGNNCC	2 cut(s)	469, 511
PaqCI	CACCTGC	1 cut(s)	520
PfeI	GAWTC	3 cut(s)	136, 160, 555
PkrI	GCNGC	4 cut(s)	109, 112, 292, 295
PleI	GAGTC	2 cut(s)	136, 343
PpsI	GAGTC	2 cut(s)	136, 343
PspN4I	GGNNCC	2 cut(s)	469, 511
PstNI	CAGNNNCTG	1 cut(s)	558
PsuI	RGATCY	2 cut(s)	358, 467
RsaI	GTAC	2 cut(s)	44, 343
RsaNI	GTAC	2 cut(s)	43, 342
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	4 cut(s)	108, 111, 291, 294
Sau3AI	GATC	2 cut(s)	358, 467
SchI	GAGTC	2 cut(s)	137, 343
SduI	GDGCHC	1 cut(s)	537
SetI	ASST	7 cut(s)	232, 243, 339, 380, 458, 511, 534
SfaNI	GCATC	1 cut(s)	94
SmlI	CTYRAG	2 cut(s)	353, 373
SmoI	CTYRAG	2 cut(s)	353, 373
SpeI	ACTAGT	1 cut(s)	412
Sse9I	AATT	6 cut(s)	20, 71, 120, 177, 219, 397
SspMI	CTAG	1 cut(s)	413
StyI	CCWWGG	1 cut(s)	505
TaaI	ACNGT	3 cut(s)	47, 88, 545
TaqI	TCGA	1 cut(s)	90
TasI	AATT	6 cut(s)	20, 71, 120, 177, 219, 397
TatI	WGTACW	1 cut(s)	341
TfiI	GAWTC	3 cut(s)	136, 160, 555
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TseI	GCWGC	4 cut(s)	107, 110, 290, 293
TspDTI	ATGAA	2 cut(s)	111, 464
XapI	RAATTY	1 cut(s)	71
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.