Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042306.1

Orthogroup ID

OG0005627

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 406

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042306.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 313 bp

atggctgcgttgccggaccagaacggcgattcggcgtccggcggacgggagtcgcagaggacgattccgacgccgtttttgacgaaaacgtatgagctcgtggacgatccggaggccgacgatttgatttcgtggagcgaaggcggatcgactttcatagtgtggcggccggccgaatttgccagagatatactacccaagtacttcaaacacaacaacttctccagcttcgtccgccagctaaacacttacggatttcggaaggttgttccggatcggtgggagtttgccaacgactgcttcaagagagggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0042493 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

104

Amino Acids

11.93

Weight (kDa)

5.32

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11660
fragaria_vesca	FvH4_5g01770 FvH4_5g01770 FvH4_5g01770 FvH4_5g01770 FvH4_5g01770 FvH4_5g01770
malus_domestica	MD04G1064700.v1.1
prunus_persica	Prupe.5G093200_v2.0.a1 Prupe.5G093200_v2.0.a1 Prupe.5G093200_v2.0.a1 Prupe.5G093200_v2.0.a1 Prupe.5G093200_v2.0.a1
pyrus_communis	pycom04g05850 pycom17g23290
rosa_chinensis	RchiOBHm_Chr7g0198941
rosa_laevigata	RLG00000003831
rosa_multiflora	Rmu_sc0006266.1_g000015 Rmu_sc0042306.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257300
rosa_rugosa	Rorug07G0051100 Rorug07G0051200 Rorug07G0051300
rosa_samantha	Rh7AG174600 Rh7BG177800 Rh7CG183800 Rh7DG177200
rosa_wichuraiana	Rw7G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	109, 271
AciI	CCGC	4 cut(s)	42, 144, 166, 235
AclWI	GGATC	3 cut(s)	101, 154, 282
AcoI	YGGCCR	2 cut(s)	167, 171
AcsI	RAATTY	1 cut(s)	176
AcyI	GRCGYC	2 cut(s)	35, 71
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	208, 304
AjuI	GAANNNNNNNTTGG	1 cut(s)	284
AluBI	AGCT	3 cut(s)	97, 228, 241
AluI	AGCT	3 cut(s)	97, 228, 241
Alw21I	GWGCWC	1 cut(s)	99
AlwI	GGATC	3 cut(s)	101, 154, 282
Aor13HI	TCCGGA	2 cut(s)	109, 271
AoxI	GGCC	3 cut(s)	114, 167, 171
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	61, 93
AspS9I	GGNCC	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	99
BauI	CACGAG	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	99
BceAI	ACGGC	2 cut(s)	40, 58
BisI	GCNGC	2 cut(s)	6, 167
BlsI	GCNGC	2 cut(s)	7, 168
BmcAI	AGTACT	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BoxI	GACNNNNGTC	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	208
BsaHI	GRCGYC	2 cut(s)	35, 71
BsaWI	WCCGGW	2 cut(s)	109, 271
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse118I	RCCGGY	1 cut(s)	169
BseAI	TCCGGA	2 cut(s)	109, 271
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseX3I	CGGCCG	2 cut(s)	167, 171
Bsh1285I	CGRYCG	2 cut(s)	170, 174
BshFI	GGCC	3 cut(s)	116, 169, 173
BsiEI	CGRYCG	2 cut(s)	170, 174
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	5 cut(s)	14, 39, 110, 170, 272
BslI	CCNNNNNNNGG	1 cut(s)	45
BsnI	GGCC	3 cut(s)	116, 169, 173
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp13I	TCCGGA	2 cut(s)	109, 271
Bsp143I	GATC	3 cut(s)	106, 146, 274
BspACI	CCGC	4 cut(s)	42, 144, 166, 235
BspANI	GGCC	3 cut(s)	116, 169, 173
BspEI	TCCGGA	2 cut(s)	109, 271
BspPI	GGATC	3 cut(s)	101, 154, 282
BsrFI	RCCGGY	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	169
BssMI	GATC	3 cut(s)	106, 146, 274
BssNI	GRCGYC	2 cut(s)	35, 71
BssSI	CACGAG	1 cut(s)	98
Bst2BI	CACGAG	1 cut(s)	98
BstACI	GRCGYC	2 cut(s)	35, 71
BstC8I	GCNNGC	2 cut(s)	171, 239
BstKTI	GATC	3 cut(s)	109, 149, 277
BstMBI	GATC	3 cut(s)	106, 146, 274
BstMCI	CGRYCG	2 cut(s)	170, 174
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 234
BstPAI	GACNNNNGTC	1 cut(s)	49
BstZI	CGGCCG	2 cut(s)	167, 171
BsuRI	GGCC	3 cut(s)	116, 169, 173
Cac8I	GCNNGC	2 cut(s)	171, 239
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	16
CseI	GACGC	2 cut(s)	24, 79
Csp6I	GTAC	1 cut(s)	202
CviJI	RGCY	7 cut(s)	5, 97, 116, 169, 173, 228, 241
CviKI_1	RGCY	7 cut(s)	5, 97, 116, 169, 173, 228, 241
CviQI	GTAC	1 cut(s)	202
DpnI	GATC	3 cut(s)	108, 148, 276
DpnII	GATC	3 cut(s)	106, 146, 274
EaeI	YGGCCR	2 cut(s)	167, 171
EagI	CGGCCG	2 cut(s)	167, 171
EciI	GGCGGA	3 cut(s)	57, 159, 224
Ecl136II	GAGCTC	1 cut(s)	97
EclXI	CGGCCG	2 cut(s)	167, 171
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	16
Eco52I	CGGCCG	2 cut(s)	167, 171
Eco53kI	GAGCTC	1 cut(s)	97
EcoICRI	GAGCTC	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	99
FaiI	YATR	3 cut(s)	93, 158, 191
Fnu4HI	GCNGC	2 cut(s)	6, 167
FriOI	GRGCYC	1 cut(s)	99
FseI	GGCCGGCC	1 cut(s)	173
Fsp4HI	GCNGC	2 cut(s)	6, 167
GluI	GCNGC	2 cut(s)	6, 167
GsuI	CTGGAG	1 cut(s)	208
HaeIII	GGCC	3 cut(s)	116, 169, 173
HapII	CCGG	5 cut(s)	14, 39, 110, 170, 272
HgaI	GACGC	2 cut(s)	24, 79
Hin1I	GRCGYC	2 cut(s)	35, 71
HinfI	GANTC	3 cut(s)	29, 50, 64
HpaII	CCGG	5 cut(s)	14, 39, 110, 170, 272
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	69, 261
Hpy188III	TCNNGA	3 cut(s)	110, 272, 304
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	2 cut(s)	73, 122
HpyAV	CCTTC	2 cut(s)	134, 256
HpyCH4IV	ACGT	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 234
HpySE526I	ACGT	1 cut(s)	89
Hsp92I	GRCGYC	2 cut(s)	35, 71
Kpn2I	TCCGGA	2 cut(s)	109, 271
KroI	GCCGGC	1 cut(s)	169
KroNI	GCCGGC	1 cut(s)	171
Kzo9I	GATC	3 cut(s)	106, 146, 274
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	9 cut(s)	27, 32, 52, 123, 183, 196, 238, 251, 285
MaeII	ACGT	1 cut(s)	89
MalI	GATC	3 cut(s)	108, 148, 276
MboI	GATC	3 cut(s)	106, 146, 274
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	1 cut(s)	176
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	3 cut(s)	51, 106, 302
MroI	TCCGGA	2 cut(s)	109, 271
MroNI	GCCGGC	1 cut(s)	169
MspI	CCGG	5 cut(s)	14, 39, 110, 170, 272
MwoI	GCNNNNNNNGC	2 cut(s)	179, 234
NaeI	GCCGGC	1 cut(s)	171
NdeII	GATC	3 cut(s)	106, 146, 274
NgoMIV	GCCGGC	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	59
PdiI	GCCGGC	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	29, 64
PkrI	GCNGC	2 cut(s)	7, 168
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PshAI	GACNNNNGTC	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	16
RigI	GGCCGGCC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SacI	GAGCTC	1 cut(s)	99
SatI	GCNGC	2 cut(s)	6, 167
Sau3AI	GATC	3 cut(s)	106, 146, 274
Sau96I	GGNCC	1 cut(s)	16
ScaI	AGTACT	1 cut(s)	203
SchI	GAGTC	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	5 cut(s)	92, 99, 230, 243, 267
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	1 cut(s)	176
SsiI	CCGC	4 cut(s)	42, 144, 166, 235
SstI	GAGCTC	1 cut(s)	99
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	1 cut(s)	149
TasI	AATT	1 cut(s)	176
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	1 cut(s)	169
TfiI	GAWTC	2 cut(s)	29, 64
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	145
TspGWI	ACGGA	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	1 cut(s)	176
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.