Rh7CG183800

Heat Stress Transcription Factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005627
Physical Location & Seq
Forward (+)
16030468 .. 16031606
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG183800.1

Sequence Viewer

Length: 1047 bp
ATGGCTGCGTTGCCGGACCAGAACGGCGATTCAGCGTCCGGCGGACGGGAGTCGCAGAGGACGATTCCGACGCCGTTTTTGACGAAAACGTATGAGCTCGTGGACGATCCGGAGGCCGACGATTTGATTTCGTGGAGCGAAGGCGGATCGACTTTCATAGTGTGGCGGCCGGCCGAATTTGCCAGAGATATACTCCCCAAGTACTTCAAACACAACAACTTCTCCAGCTTCGTGCGCCAGCTAAACACTTACGGATTTCGGAAGGTTGTTCCGGATCGGTGGGAGTTTGCCAACGACTGCTTCAAGAGAGGGGAGAAAGGACTCCTCCGCGAGATTCAGCGCCGGAAGATCTCCCCGGCGGTGTCCGCTTCCGCCGCGGCGGTTGTGGCGGCGGCGACCGTGGCGGCGGCGACACTGCCTCCAGCGACGGTTTCGGTTTCTCCGGCAAACTCCGGCGACGAGCAGGTGATCTCGTCCAACTCGTCGCCGATGGCCGTGCCGGCGCCGACTCCGACGGTGGCGTTGCTGCCGCGAACCAGGAGCTGCAACACCACGGCGGAGATTCTAGAGGAGAACGAGCGGTTGAGGAAAGAGAACATGCAGCTCAGCCAGGAGCTGGCTCAGCTTCGGGGGTTGTGTAACAATATACTAGCAATGATGACTAACTACGCCTCGGGGCAGTTAGCGAGAGGCGGCGGAGCAGCGGCCGAGGATAAGCGGCCACATCCTCCGCCTCTTGCGGTGAAAAAATCTCAGGAGGGCGAAAACGCCGCCGTATCAGGCGGCGACAAGGCGGAGTACTCGGCGGGGGAAGAGGAGATGGAGGAGGATCAGGAGGAGGAAACGCCGGCGCCGCCGCTTCCGATTCAGACGCCGAAGCTGTTTGGGGTTTCAATCGGGGTGAAGCGCGTGAGGAGAGACGAGGGGGAGGAGGAGGAGGATCATGAGCGTCAAAACCAAGGGTGTGATGAGGTGGTGAAGCCGGAGCCGTCGGATGGGAGCGCCAAGCACGATAAGGAGGCTACGTGGCTGGAGCTGAGGAAGTGA

Protein Analysis

348

Amino Acids

37.97

Weight (kDa)

4.98

Isoelectric Point (pI)

57.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 26 - 115 6e-31 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 454
Acc36I ACCTGC 1 cut(s) 454
AccB1I GGYRCC 2 cut(s) 502, 850
AccB7I CCANNNNNTGG 1 cut(s) 616
AccBSI CCGCTC 1 cut(s) 580
AccII CGCG 4 cut(s) 330, 377, 532, 909
AccIII TCCGGA 2 cut(s) 109, 271
AclWI GGATC 5 cut(s) 101, 154, 282, 837, 948
AcoI YGGCCR 5 cut(s) 167, 171, 492, 705, 719
AcsI RAATTY 1 cut(s) 176
AcyI GRCGYC 4 cut(s) 71, 503, 851, 872
AfaI GTAC 2 cut(s) 203, 800
AfiI CCNNNNNNNGG 3 cut(s) 45, 616, 995
AgsI TTSAA 3 cut(s) 208, 304, 894
AjnI CCWGG 2 cut(s) 536, 609
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 9 cut(s) 97, 228, 241, 543, 604, 616, 625, 880, 1036
AluI AGCT 9 cut(s) 97, 228, 241, 543, 604, 616, 625, 880, 1036
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 912
AlwI GGATC 5 cut(s) 101, 154, 282, 837, 948
AlwNI CAGNNNCTG 2 cut(s) 543, 616
Ama87I CYCGRG 1 cut(s) 673
Aor13HI TCCGGA 2 cut(s) 109, 271
AoxI GGCC 6 cut(s) 114, 167, 171, 492, 705, 719
ApeKI GCWGC 5 cut(s) 5, 526, 543, 601, 701
ApoI RAATTY 1 cut(s) 176
ArsI GACNNNNNNTTYG 2 cut(s) 61, 93
AspLEI GCGC 6 cut(s) 237, 342, 505, 853, 909, 1004
AspS9I GGNCC 1 cut(s) 16
AsuC2I CCSGG 1 cut(s) 356
AsuHPI GGTGA 4 cut(s) 478, 754, 913, 988
AvaI CYCGRG 1 cut(s) 673
AvaII GGWCC 1 cut(s) 16
BanI GGYRCC 2 cut(s) 502, 850
BanII GRGCYC 1 cut(s) 99
BauI CACGAG 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 99
BbvCI CCTCAGC 1 cut(s) 1037
BbvI GCAGC 4 cut(s) 513, 530, 613, 713
BccI CCATC 3 cut(s) 484, 814, 989
BceAI ACGGC 6 cut(s) 40, 58, 479, 570, 758, 973
BcgI CGANNNNNNTGC 2 cut(s) 478, 512
BciT130I CCWGG 2 cut(s) 538, 611
BcnI CCSGG 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 912
BfaI CTAG 2 cut(s) 566, 650
BfoI RGCGCY 4 cut(s) 343, 506, 854, 1005
BfuAI ACCTGC 1 cut(s) 454
BglI GCCNNNNNGGC 1 cut(s) 500
BglII AGATCT 1 cut(s) 348
BlpI GCTNAGC 2 cut(s) 605, 621
BmcAI AGTACT 2 cut(s) 203, 800
Bme1390I CCNGG 3 cut(s) 356, 538, 611
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 673
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 3 cut(s) 504, 852, 987
BmrFI CCNGG 3 cut(s) 356, 538, 611
BoxI GACNNNNGTC 1 cut(s) 49
BplI GAGNNNNNCTC 2 cut(s) 177, 209
BpmI CTGGAG 2 cut(s) 208, 405
Bpu10I CCTNAGC 1 cut(s) 1037
Bpu1102I GCTNAGC 2 cut(s) 605, 621
BpuMI CCSGG 1 cut(s) 356
BsaAI YACGTR 1 cut(s) 1026
BsaHI GRCGYC 4 cut(s) 71, 503, 851, 872
BsaJI CCNNGG 7 cut(s) 354, 375, 399, 552, 672, 708, 958
BsaWI WCCGGW 2 cut(s) 109, 271
BsaXI ACNNNNNCTCC 6 cut(s) 206, 236, 403, 433, 1010, 1040
Bsc4I CCNNNNNNNGG 3 cut(s) 45, 616, 995
Bse118I RCCGGY 3 cut(s) 169, 499, 847
Bse3DI GCAATG 1 cut(s) 660
BseAI TCCGGA 2 cut(s) 109, 271
BseBI CCWGG 2 cut(s) 538, 611
BseDI CCNNGG 7 cut(s) 354, 375, 399, 552, 672, 708, 958
BseGI GGATG 2 cut(s) 724, 1000
BseLI CCNNNNNNNGG 3 cut(s) 45, 616, 995
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 4 cut(s) 619, 635, 767, 1028
BseRI GAGGAG 9 cut(s) 314, 584, 830, 839, 851, 928, 944, 947, 950
BseX3I CGGCCG 3 cut(s) 167, 171, 705
BseXI GCAGC 4 cut(s) 513, 530, 613, 713
Bsh1236I CGCG 4 cut(s) 330, 377, 532, 909
Bsh1285I CGRYCG 4 cut(s) 170, 174, 399, 708
BshFI GGCC 6 cut(s) 116, 169, 173, 494, 707, 721
BshNI GGYRCC 2 cut(s) 502, 850
BsiEI CGRYCG 4 cut(s) 170, 174, 399, 708
BsiHKAI GWGCWC 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 673
BslI CCNNNNNNNGG 3 cut(s) 45, 616, 995
BsmAI GTCTC 1 cut(s) 912
BsmBI CGTCTC 1 cut(s) 912
BsnI GGCC 6 cut(s) 116, 169, 173, 494, 707, 721
BsoBI CYCGRG 1 cut(s) 673
Bsp1286I GDGCHC 1 cut(s) 99
Bsp13I TCCGGA 2 cut(s) 109, 271
Bsp143I GATC 7 cut(s) 106, 146, 274, 348, 468, 829, 940
Bsp1720I GCTNAGC 2 cut(s) 605, 621
BspANI GGCC 6 cut(s) 116, 169, 173, 494, 707, 721
BspCNI CTCAG 4 cut(s) 618, 634, 766, 1029
BspEI TCCGGA 2 cut(s) 109, 271
BspFNI CGCG 4 cut(s) 330, 377, 532, 909
BspHI TCATGA 1 cut(s) 943
BspLI GGNNCC 3 cut(s) 504, 852, 987
BspMI ACCTGC 1 cut(s) 454
BspPI GGATC 5 cut(s) 101, 154, 282, 837, 948
BspT107I GGYRCC 2 cut(s) 502, 850
BsrBI CCGCTC 1 cut(s) 580
BsrDI GCAATG 1 cut(s) 660
BsrFI RCCGGY 3 cut(s) 169, 499, 847
BssAI RCCGGY 3 cut(s) 169, 499, 847
BssECI CCNNGG 7 cut(s) 354, 375, 399, 552, 672, 708, 958
BssMI GATC 7 cut(s) 106, 146, 274, 348, 468, 829, 940
BssNI GRCGYC 4 cut(s) 71, 503, 851, 872
BssSI CACGAG 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 958
Bst2BI CACGAG 1 cut(s) 98
Bst2UI CCWGG 2 cut(s) 538, 611
Bst4CI ACNGT 3 cut(s) 400, 430, 517
Bst6I CTCTTC 1 cut(s) 807
BstACI GRCGYC 4 cut(s) 71, 503, 851, 872
BstBAI YACGTR 1 cut(s) 1026
BstC8I GCNNGC 5 cut(s) 171, 239, 501, 618, 849
BstDEI CTNAG 4 cut(s) 605, 621, 753, 1037
BstDSI CCRYGG 3 cut(s) 375, 399, 552
BstF5I GGATG 2 cut(s) 724, 1000
BstFNI CGCG 4 cut(s) 330, 377, 532, 909
BstH2I RGCGCY 4 cut(s) 343, 506, 854, 1005
BstHHI GCGC 6 cut(s) 237, 342, 505, 853, 909, 1004
BstKTI GATC 7 cut(s) 109, 149, 277, 351, 471, 832, 943
BstMAI GTCTC 1 cut(s) 912
BstMBI GATC 7 cut(s) 106, 146, 274, 348, 468, 829, 940
BstMCI CGRYCG 4 cut(s) 170, 174, 399, 708
BstMWI GCNNNNNNNGC 9 cut(s) 179, 234, 365, 374, 386, 401, 500, 622, 853
BstNI CCWGG 2 cut(s) 538, 611
BstNSI RCATGY 1 cut(s) 601
BstPAI GACNNNNGTC 1 cut(s) 49
BstSCI CCNGG 3 cut(s) 354, 536, 609
BstUI CGCG 4 cut(s) 330, 377, 532, 909
BstV1I GCAGC 4 cut(s) 513, 530, 613, 713
BstX2I RGATCY 1 cut(s) 348
BstYI RGATCY 1 cut(s) 348
BstZI CGGCCG 3 cut(s) 167, 171, 705
BsuRI GGCC 6 cut(s) 116, 169, 173, 494, 707, 721
BtgI CCRYGG 3 cut(s) 375, 399, 552
BtsCI GGATG 2 cut(s) 724, 1000
BtsI GCAGTG 1 cut(s) 413
BtsIMutI CAGTG 1 cut(s) 413
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 5 cut(s) 171, 239, 501, 618, 849
CaiI CAGNNNCTG 2 cut(s) 543, 616
CciI TCATGA 1 cut(s) 943
CfoI GCGC 6 cut(s) 237, 342, 505, 853, 909, 1004
Cfr10I RCCGGY 3 cut(s) 169, 499, 847
Cfr13I GGNCC 1 cut(s) 16
Cfr42I CCGCGG 1 cut(s) 378
CseI GACGC 4 cut(s) 24, 79, 880, 938
Csp6I GTAC 2 cut(s) 202, 799
CviAII CATG 2 cut(s) 598, 944
CviQI GTAC 2 cut(s) 202, 799
DdeI CTNAG 4 cut(s) 605, 621, 753, 1037
DinI GGCGCC 2 cut(s) 504, 852
DpnI GATC 7 cut(s) 108, 148, 276, 350, 470, 831, 942
DpnII GATC 7 cut(s) 106, 146, 274, 348, 468, 829, 940
EaeI YGGCCR 5 cut(s) 167, 171, 492, 705, 719
EagI CGGCCG 3 cut(s) 167, 171, 705
Eam1104I CTCTTC 1 cut(s) 807
EarI CTCTTC 1 cut(s) 807
EciI GGCGGA 7 cut(s) 57, 159, 361, 572, 711, 720, 809
Ecl136II GAGCTC 1 cut(s) 97
EclXI CGGCCG 3 cut(s) 167, 171, 705
Eco130I CCWWGG 1 cut(s) 958
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 16
Eco52I CGGCCG 3 cut(s) 167, 171, 705
Eco53kI GAGCTC 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 673
EcoICRI GAGCTC 1 cut(s) 97
EcoRII CCWGG 2 cut(s) 536, 609
EcoT14I CCWWGG 1 cut(s) 958
EcoT38I GRGCYC 1 cut(s) 99
EgeI GGCGCC 2 cut(s) 504, 852
EheI GGCGCC 2 cut(s) 504, 852
ErhI CCWWGG 1 cut(s) 958
Esp3I CGTCTC 1 cut(s) 912
FaeI CATG 2 cut(s) 601, 947
FaiI YATR 6 cut(s) 93, 158, 191, 599, 647, 945
FatI CATG 2 cut(s) 597, 943
FauI CCCGC 1 cut(s) 799
FokI GGATG 2 cut(s) 711, 1007
FriOI GRGCYC 1 cut(s) 99
FseI GGCCGGCC 1 cut(s) 173
FspBI CTAG 2 cut(s) 566, 650
GlaI GCGC 6 cut(s) 236, 341, 504, 852, 908, 1003
GsuI CTGGAG 2 cut(s) 208, 405
HaeII RGCGCY 4 cut(s) 343, 506, 854, 1005
HaeIII GGCC 6 cut(s) 116, 169, 173, 494, 707, 721
HgaI GACGC 4 cut(s) 24, 79, 880, 938
HhaI GCGC 6 cut(s) 237, 342, 505, 853, 909, 1004
Hin1I GRCGYC 4 cut(s) 71, 503, 851, 872
Hin1II CATG 2 cut(s) 601, 947
Hin6I GCGC 6 cut(s) 235, 340, 503, 851, 907, 1002
HinP1I GCGC 6 cut(s) 235, 340, 503, 851, 907, 1002
HinfI GANTC 8 cut(s) 29, 50, 64, 321, 334, 508, 562, 865
HphI GGTGA 4 cut(s) 478, 754, 913, 988
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 6 cut(s) 69, 261, 513, 864, 870, 994
Hpy188III TCNNGA 7 cut(s) 110, 272, 304, 566, 755, 833, 944
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 7 cut(s) 73, 122, 430, 461, 487, 517, 994
HpyAV CCTTC 2 cut(s) 134, 256
HpyCH4III ACNGT 3 cut(s) 400, 430, 517
HpyCH4IV ACGT 2 cut(s) 89, 1025
HpyCH4V TGCA 2 cut(s) 546, 601
HpyF10VI GCNNNNNNNGC 9 cut(s) 179, 234, 365, 374, 386, 401, 500, 622, 853
HpyF3I CTNAG 4 cut(s) 605, 621, 753, 1037
HpySE526I ACGT 2 cut(s) 89, 1025
Hsp92I GRCGYC 4 cut(s) 71, 503, 851, 872
Hsp92II CATG 2 cut(s) 601, 947
HspAI GCGC 6 cut(s) 235, 340, 503, 851, 907, 1002
KasI GGCGCC 2 cut(s) 502, 850
Kpn2I TCCGGA 2 cut(s) 109, 271
KroI GCCGGC 3 cut(s) 169, 499, 847
KroNI GCCGGC 3 cut(s) 171, 501, 849
KspI CCGCGG 1 cut(s) 378
Kzo9I GATC 7 cut(s) 106, 146, 274, 348, 468, 829, 940
LmnI GCTCC 7 cut(s) 135, 540, 613, 698, 985, 999, 1033
Lsp1109I GCAGC 4 cut(s) 513, 530, 613, 713
MaeI CTAG 2 cut(s) 566, 650
MaeII ACGT 2 cut(s) 89, 1025
MaeIII GTNAC 1 cut(s) 638
MalI GATC 7 cut(s) 108, 148, 276, 350, 470, 831, 942
MbiI CCGCTC 1 cut(s) 580
MboI GATC 7 cut(s) 106, 146, 274, 348, 468, 829, 940
MboII GAAGA 2 cut(s) 358, 824
MflI RGATCY 1 cut(s) 348
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 1 cut(s) 176
Mly113I GGCGCC 2 cut(s) 503, 851
MlyI GAGTC 3 cut(s) 59, 315, 502
MmeI TCCRAC 4 cut(s) 92, 501, 536, 972
MreI CGCCGGCG 1 cut(s) 847
MroI TCCGGA 2 cut(s) 109, 271
MroNI GCCGGC 3 cut(s) 169, 499, 847
MspA1I CMGCKG 2 cut(s) 377, 704
MspR9I CCNGG 3 cut(s) 356, 538, 611
MvaI CCWGG 2 cut(s) 538, 611
MvnI CGCG 4 cut(s) 330, 377, 532, 909
MwoI GCNNNNNNNGC 9 cut(s) 179, 234, 365, 374, 386, 401, 500, 622, 853
NaeI GCCGGC 3 cut(s) 171, 501, 849
NarI GGCGCC 2 cut(s) 503, 851
NciI CCSGG 1 cut(s) 356
NdeII GATC 7 cut(s) 106, 146, 274, 348, 468, 829, 940
NgoMIV GCCGGC 3 cut(s) 169, 499, 847
NlaIII CATG 2 cut(s) 601, 947
NlaIV GGNNCC 3 cut(s) 504, 852, 987
NmeAIII GCCGAG 2 cut(s) 733, 782
NspI RCATGY 1 cut(s) 601
PagI TCATGA 1 cut(s) 943
PaqCI CACCTGC 1 cut(s) 454
PcsI WCGNNNNNNNCGW 2 cut(s) 59, 479
PdiI GCCGGC 3 cut(s) 171, 501, 849
PfeI GAWTC 5 cut(s) 29, 64, 334, 562, 865
PflMI CCANNNNNTGG 1 cut(s) 616
PleI GAGTC 3 cut(s) 58, 315, 502
PluTI GGCGCC 2 cut(s) 506, 854
PpsI GAGTC 3 cut(s) 58, 315, 502
Ppu21I YACGTR 1 cut(s) 1026
PshAI GACNNNNGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 99
Psp6I CCWGG 2 cut(s) 536, 609
PspGI CCWGG 2 cut(s) 536, 609
PspN4I GGNNCC 3 cut(s) 504, 852, 987
PspPI GGNCC 1 cut(s) 16
PstNI CAGNNNCTG 2 cut(s) 543, 616
PsuI RGATCY 1 cut(s) 348
RigI GGCCGGCC 1 cut(s) 173
RsaI GTAC 2 cut(s) 203, 800
RsaNI GTAC 2 cut(s) 202, 799
SacI GAGCTC 1 cut(s) 99
SacII CCGCGG 1 cut(s) 378
Sau3AI GATC 7 cut(s) 106, 146, 274, 348, 468, 829, 940
Sau96I GGNCC 1 cut(s) 16
ScaI AGTACT 2 cut(s) 203, 800
SchI GAGTC 3 cut(s) 59, 315, 502
ScrFI CCNGG 3 cut(s) 356, 538, 611
SduI GDGCHC 1 cut(s) 99
SfoI GGCGCC 2 cut(s) 504, 852
Sfr303I CCGCGG 1 cut(s) 378
SgrAI CRCCGGYG 1 cut(s) 847
SgrBI CCGCGG 1 cut(s) 378
SinI GGWCC 1 cut(s) 16
Sse9I AATT 1 cut(s) 176
SspDI GGCGCC 2 cut(s) 502, 850
SspMI CTAG 2 cut(s) 566, 650
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 3 cut(s) 354, 536, 609
StyI CCWWGG 1 cut(s) 958
TaaI ACNGT 3 cut(s) 400, 430, 517
TaiI ACGT 2 cut(s) 92, 1028
TaqI TCGA 1 cut(s) 149
TasI AATT 1 cut(s) 176
TatI WGTACW 2 cut(s) 201, 798
TfiI GAWTC 5 cut(s) 29, 64, 334, 562, 865
TscAI CASTG 1 cut(s) 420
TseI GCWGC 5 cut(s) 5, 526, 543, 601, 701
TspDTI ATGAA 1 cut(s) 145
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 1 cut(s) 420
Van91I CCANNNNNTGG 1 cut(s) 616
VpaK11BI GGWCC 1 cut(s) 16
XapI RAATTY 1 cut(s) 176
XbaI TCTAGA 1 cut(s) 565
XceI RCATGY 1 cut(s) 601
XspI CTAG 2 cut(s) 566, 650
ZrmI AGTACT 2 cut(s) 203, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.