Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006744

Physical Location & Seq

Genomic Coordinates Reverse (-)

7429705 .. 7432027

Gene Structure 2323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G12540.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGAACCTTATATAACCAGAAGAGATACAGTTAATCAAGTGTTACATGCAGAAGAAGAAGAAGAATACAATGATTGTGAATTGGATCAACTCTTCCTTGTGCATTCTGATATTAGATCTGTTCTTCTCCAGATTGATGAGCTTGTTGTTGAAGCCACAAAGCGTAAGACCGTGAGCAAGCACGGGTTAATAGAAGTTGAATCTTTCAGAACTGTGTTGTCTGATATGCTTTCCTCACTAAAGGTTTCATTCCTTTTACACCTATTATTTTTAAACCTGTTTTTACGTATGCAGCCATGGTTTCCTCGATTGCAAGAAGCGATGTCTGATTTTCAGTTGCTTCCAGAGGATCAGGAAGAACAGTCTTTGATGAGCACAAACGAAGAAGAAGATTTGTTTGATGTTGAGAGTCCTGAGCCTACTCAATTTGAGCCCTTAGTCTCTCCTTCTCCTCTTGTGCATTGGCGTGGTGATCATAACGCAGACAAGGGTAGACAACTCTTTCTTTTGACACCACTACCCTTAGGAAAATCTGAATTCCTAAAACACCAGAATGCATCTAAGCTTACAGCTAAAAGGATTTTTCCAGACACTGTTGCAAATGAACCGCTTGAAGCTTCTAAAGAAACAAGTGATGATGTTTTAGGAGGTGAGTCGTTGAAAACTGCAGGACTTGGTAAATCTTTAGTCCATGCCATGGATTTCTCTGAAAATTTGGTTGAGTATAAGCCATGTTCTTCACCAGTTCTCAGGAGAAAGATTCTGTCTGAGCTTCTAATGACACCTTGCTTGAAGCTGTCGCCTCCGAAATCGTGTACAATGTTTAAACCGGTTCCTGAATCTTCTCAACTGGGAAAGCAAGGGGCTTGTAAGTCTACCTGCTCTGAATTGGGATCATCTGGTATTGAAAAAACAGACAATCTCTGCTCGAAGTATCCTGAGCTCTTGGGAATACAACATGCTCCGATAACTAGAAAAACGGATCTTGAATCCTCGCCGGTTTGGTGGTTTTCTCCTCCTAAAACATGTGTTTTAATGGAGCCTGTGAATGAGAAGAAACCAATTGATGAAACTGGTGGATCTTTTGATGTTCCAAACATTATACCAGAAGCAAAACACACTACAGAGGGAAGCATGTCAATGGTGGTTGAGAGTACTCCATTGTTTAAAGAACCAGAGAGCATAATGACGAGAAACAGAACAAAAGCAGGTGAGAGTACTCTGAAGAAAGAGCTATGGACAAGATTTGAAGAAGCAACGATTCATGACAGTCGGTTCAACTCGATGACAACAACAACAACAGTGAGAGGAAATAATAAGAAATGTTTCATGGAAATGTTAGAAGAAGTGAGTGGCAATGAGGAAGATCATGAGTTAAGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

461

Amino Acids

52.06

Weight (kDa)

5.02

Isoelectric Point (pI)

57.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12540 AT4G12540 AT4G12540 AT4G12540 AT4G12540
fragaria_vesca	FvH4_6g32410 FvH4_6g32410
malus_domestica	MD09G1202700.v1.1 MD17G1183900.v1.1
prunus_persica	Prupe.3G058900_v2.0.a1
pyrus_communis	pycom09g11960 pycom17g19330
rosa_chinensis	RchiOBHm_Chr2g0140551
rosa_laevigata	RLG00000019877
rosa_multiflora	Rmu_co8291533.1_g000001 Rmu_sc0002521.1_g000027 Rmu_ssc0000213.1_g000127
rosa_roxburghii	Rroxscaffold_153G00436640 Rroxscaffold_2G00104690 Rroxscaffold_2G00104700
rosa_rugosa	Rorug02G0363500
rosa_samantha	Rh2AG414500 Rh2BG424400 Rh2CG400900 Rh2DG434400
rosa_wichuraiana	Rw2G033950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1199
Acc36I	ACCTGC	2 cut(s)	887, 1199
AccB7I	CCANNNNNTGG	1 cut(s)	697
AccI	GTMKAC	2 cut(s)	493, 875
AciI	CCGC	1 cut(s)	608
AclWI	GGATC	5 cut(s)	93, 357, 901, 990, 1087
AcsI	RAATTY	2 cut(s)	536, 712
AcuI	CTGAAG	1 cut(s)	1244
AfaI	GTAC	3 cut(s)	817, 1156, 1219
AfiI	CCNNNNNNNGG	1 cut(s)	697
AflIII	ACRYGT	1 cut(s)	1025
AgeI	ACCGGT	1 cut(s)	829
AgsI	TTSAA	9 cut(s)	152, 200, 614, 661, 793, 908, 989, 1250, 1279
AluBI	AGCT	8 cut(s)	142, 565, 572, 617, 772, 796, 943, 1234
AluI	AGCT	8 cut(s)	142, 565, 572, 617, 772, 796, 943, 1234
Alw21I	GWGCWC	2 cut(s)	377, 945
Alw26I	GTCTC	1 cut(s)	445
AlwI	GGATC	5 cut(s)	93, 357, 901, 990, 1087
AlwNI	CAGNNNCTG	1 cut(s)	593
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	2 cut(s)	536, 712
AsiGI	ACCGGT	1 cut(s)	829
Asp700I	GAANNNNTTC	1 cut(s)	1325
AsuHPI	GGTGA	4 cut(s)	482, 662, 732, 1223
AxyI	CCTNAGG	1 cut(s)	523
BanII	GRGCYC	2 cut(s)	435, 945
Bbv12I	GWGCWC	2 cut(s)	377, 945
BbvI	GCAGC	1 cut(s)	304
BciVI	GTATCC	1 cut(s)	945
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	445
BfaI	CTAG	1 cut(s)	972
BfmI	CTRYAG	2 cut(s)	666, 1122
BfuAI	ACCTGC	2 cut(s)	887, 1199
BfuI	GTATCC	1 cut(s)	945
BglII	AGATCT	1 cut(s)	116
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
BmcAI	AGTACT	2 cut(s)	1156, 1219
BmiI	GGNNCC	3 cut(s)	6, 834, 1041
BmrI	ACTGGG	1 cut(s)	860
BmsI	GCATC	1 cut(s)	566
BmuI	ACTGGG	1 cut(s)	860
BpmI	CTGGAG	1 cut(s)	113
Bpu10I	CCTNAGC	2 cut(s)	414, 939
BsaAI	YACGTR	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	296, 696
BsaWI	WCCGGW	1 cut(s)	829
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse118I	RCCGGY	2 cut(s)	829, 997
Bse1I	ACTGG	3 cut(s)	743, 855, 1078
Bse21I	CCTNAGG	1 cut(s)	523
Bse3DI	GCAATG	1 cut(s)	1363
BseDI	CCNNGG	2 cut(s)	296, 696
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMI	GCAATG	1 cut(s)	1363
BseMII	CTCAG	4 cut(s)	405, 759, 763, 930
BseNI	ACTGG	3 cut(s)	743, 855, 1078
BseRI	GAGGAG	2 cut(s)	441, 1005
BseXI	GCAGC	1 cut(s)	304
BshTI	ACCGGT	1 cut(s)	829
BsiHKAI	GWGCWC	2 cut(s)	377, 945
BsiSI	CCGG	2 cut(s)	830, 998
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmAI	GTCTC	1 cut(s)	445
BsmI	GAATGC	2 cut(s)	103, 559
Bsp1286I	GDGCHC	3 cut(s)	377, 435, 945
Bsp1407I	TGTACA	1 cut(s)	815
Bsp143I	GATC	8 cut(s)	85, 116, 349, 472, 893, 982, 1079, 1366
Bsp19I	CCATGG	2 cut(s)	296, 696
BspACI	CCGC	1 cut(s)	608
BspCNI	CTCAG	4 cut(s)	406, 760, 762, 931
BspHI	TCATGA	2 cut(s)	1264, 1369
BspLI	GGNNCC	3 cut(s)	6, 834, 1041
BspMAI	CTGCAG	1 cut(s)	670
BspMI	ACCTGC	2 cut(s)	887, 1199
BspPI	GGATC	5 cut(s)	93, 357, 901, 990, 1087
BsrDI	GCAATG	1 cut(s)	1363
BsrFI	RCCGGY	2 cut(s)	829, 997
BsrGI	TGTACA	1 cut(s)	815
BsrI	ACTGG	3 cut(s)	743, 855, 1078
BssAI	RCCGGY	2 cut(s)	829, 997
BssECI	CCNNGG	2 cut(s)	296, 696
BssMI	GATC	8 cut(s)	85, 116, 349, 472, 893, 982, 1079, 1366
BssT1I	CCWWGG	2 cut(s)	296, 696
Bst4CI	ACNGT	7 cut(s)	31, 172, 214, 363, 595, 1271, 1303
Bst6I	CTCTTC	2 cut(s)	16, 98
BstAUI	TGTACA	1 cut(s)	815
BstBAI	YACGTR	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	7 cut(s)	414, 436, 523, 561, 749, 768, 939
BstDSI	CCRYGG	2 cut(s)	296, 696
BstKTI	GATC	8 cut(s)	88, 119, 352, 475, 896, 985, 1082, 1369
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	8 cut(s)	85, 116, 349, 472, 893, 982, 1079, 1366
BstNSI	RCATGY	4 cut(s)	50, 962, 1029, 1138
BstSFI	CTRYAG	2 cut(s)	666, 1122
BstSNI	TACGTA	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	304
BstX2I	RGATCY	3 cut(s)	116, 982, 1079
BstYI	RGATCY	3 cut(s)	116, 982, 1079
Bsu36I	CCTNAGG	1 cut(s)	523
BsuI	GTATCC	1 cut(s)	945
BtgI	CCRYGG	2 cut(s)	296, 696
BtgZI	GCGATG	1 cut(s)	335
BtsIMutI	CAGTG	2 cut(s)	591, 1308
BveI	ACCTGC	2 cut(s)	887, 1199
Cac8I	GCNNGC	1 cut(s)	179
CaiI	CAGNNNCTG	1 cut(s)	593
CciI	TCATGA	2 cut(s)	1264, 1369
Cfr10I	RCCGGY	2 cut(s)	829, 997
Csp6I	GTAC	3 cut(s)	816, 1155, 1218
CspAI	ACCGGT	1 cut(s)	829
CviQI	GTAC	3 cut(s)	816, 1155, 1218
DdeI	CTNAG	7 cut(s)	414, 436, 523, 561, 749, 768, 939
DpnI	GATC	8 cut(s)	87, 118, 351, 474, 895, 984, 1081, 1368
DpnII	GATC	8 cut(s)	85, 116, 349, 472, 893, 982, 1079, 1366
DraI	TTTAAA	3 cut(s)	273, 826, 1168
Eam1104I	CTCTTC	2 cut(s)	16, 98
EarI	CTCTTC	2 cut(s)	16, 98
Ecl136II	GAGCTC	1 cut(s)	943
Eco105I	TACGTA	1 cut(s)	287
Eco130I	CCWWGG	2 cut(s)	296, 696
Eco24I	GRGCYC	2 cut(s)	435, 945
Eco53kI	GAGCTC	1 cut(s)	943
Eco57I	CTGAAG	1 cut(s)	1244
Eco81I	CCTNAGG	1 cut(s)	523
EcoICRI	GAGCTC	1 cut(s)	943
EcoRI	GAATTC	1 cut(s)	536
EcoT14I	CCWWGG	2 cut(s)	296, 696
EcoT22I	ATGCAT	1 cut(s)	559
EcoT38I	GRGCYC	2 cut(s)	435, 945
ErhI	CCWWGG	2 cut(s)	296, 696
FbaI	TGATCA	1 cut(s)	472
FblI	GTMKAC	2 cut(s)	493, 875
Fnu4HI	GCNGC	1 cut(s)	293
FriOI	GRGCYC	2 cut(s)	435, 945
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	1 cut(s)	972
GluI	GCNGC	1 cut(s)	293
GsuI	CTGGAG	1 cut(s)	113
HapII	CCGG	2 cut(s)	830, 998
HindIII	AAGCTT	2 cut(s)	563, 615
HinfI	GANTC	7 cut(s)	200, 409, 653, 760, 839, 989, 1261
HpaII	CCGG	2 cut(s)	830, 998
HphI	GGTGA	4 cut(s)	482, 662, 732, 1223
Hpy166II	GTNNAC	3 cut(s)	494, 816, 876
Hpy8I	GTNNAC	3 cut(s)	494, 816, 876
HpyAV	CCTTC	1 cut(s)	456
HpyCH4III	ACNGT	7 cut(s)	31, 172, 214, 363, 595, 1271, 1303
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	8 cut(s)	50, 103, 292, 313, 460, 557, 599, 668
HpyF3I	CTNAG	7 cut(s)	414, 436, 523, 561, 749, 768, 939
HpySE526I	ACGT	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	8 cut(s)	85, 116, 349, 472, 893, 982, 1079, 1366
LmnI	GCTCC	2 cut(s)	967, 1039
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	1 cut(s)	566
MaeI	CTAG	1 cut(s)	972
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	8 cut(s)	87, 118, 351, 474, 895, 984, 1081, 1368
MboI	GATC	8 cut(s)	85, 116, 349, 472, 893, 982, 1079, 1366
MfeI	CAATTG	1 cut(s)	1062
MflI	RGATCY	3 cut(s)	116, 982, 1079
MhlI	GDGCHC	3 cut(s)	377, 435, 945
MluCI	AATT	6 cut(s)	80, 425, 536, 712, 887, 1062
MlyI	GAGTC	2 cut(s)	418, 662
Mph1103I	ATGCAT	1 cut(s)	559
MroXI	GAANNNNTTC	1 cut(s)	1325
MseI	TTAA	7 cut(s)	33, 188, 272, 825, 1034, 1167, 1376
MslI	CAYNNNNRTG	4 cut(s)	465, 552, 1139, 1334
MspI	CCGG	2 cut(s)	830, 998
MssI	GTTTAAAC	1 cut(s)	826
MunI	CAATTG	1 cut(s)	1062
Mva1269I	GAATGC	2 cut(s)	103, 559
NcoI	CCATGG	2 cut(s)	296, 696
NdeII	GATC	8 cut(s)	85, 116, 349, 472, 893, 982, 1079, 1366
NlaIV	GGNNCC	3 cut(s)	6, 834, 1041
NsiI	ATGCAT	1 cut(s)	559
NspI	RCATGY	4 cut(s)	50, 962, 1029, 1138
PagI	TCATGA	2 cut(s)	1264, 1369
PaqCI	CACCTGC	1 cut(s)	1199
PciI	ACATGT	1 cut(s)	1025
PctI	GAATGC	2 cut(s)	103, 559
PdmI	GAANNNNTTC	1 cut(s)	1325
PfeI	GAWTC	5 cut(s)	200, 760, 839, 989, 1261
PflMI	CCANNNNNTGG	1 cut(s)	697
PinAI	ACCGGT	1 cut(s)	829
PkrI	GCNGC	1 cut(s)	294
PleI	GAGTC	2 cut(s)	417, 661
PmeI	GTTTAAAC	1 cut(s)	826
PpsI	GAGTC	2 cut(s)	417, 661
Ppu21I	YACGTR	1 cut(s)	287
PscI	ACATGT	1 cut(s)	1025
Psp124BI	GAGCTC	1 cut(s)	945
PspN4I	GGNNCC	3 cut(s)	6, 834, 1041
PstI	CTGCAG	1 cut(s)	670
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	3 cut(s)	116, 982, 1079
RsaI	GTAC	3 cut(s)	817, 1156, 1219
RsaNI	GTAC	3 cut(s)	816, 1155, 1218
RseI	CAYNNNNRTG	4 cut(s)	465, 552, 1139, 1334
SacI	GAGCTC	1 cut(s)	945
SaqAI	TTAA	7 cut(s)	33, 188, 272, 825, 1034, 1167, 1376
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	8 cut(s)	85, 116, 349, 472, 893, 982, 1079, 1366
ScaI	AGTACT	2 cut(s)	1156, 1219
SchI	GAGTC	2 cut(s)	418, 662
SduI	GDGCHC	3 cut(s)	377, 435, 945
SfaNI	GCATC	1 cut(s)	566
SfcI	CTRYAG	2 cut(s)	666, 1122
SmiMI	CAYNNNNRTG	4 cut(s)	465, 552, 1139, 1334
SnaBI	TACGTA	1 cut(s)	287
Sse9I	AATT	6 cut(s)	80, 425, 536, 712, 887, 1062
SsiI	CCGC	1 cut(s)	608
SspMI	CTAG	1 cut(s)	972
SstI	GAGCTC	1 cut(s)	945
StyI	CCWWGG	2 cut(s)	296, 696
TaaI	ACNGT	7 cut(s)	31, 172, 214, 363, 595, 1271, 1303
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	3 cut(s)	307, 929, 1283
TasI	AATT	6 cut(s)	80, 425, 536, 712, 887, 1062
TatI	WGTACW	3 cut(s)	815, 1154, 1217
TfiI	GAWTC	5 cut(s)	200, 760, 839, 989, 1261
Tru1I	TTAA	7 cut(s)	33, 188, 272, 825, 1034, 1167, 1376
Tru9I	TTAA	7 cut(s)	33, 188, 272, 825, 1034, 1167, 1376
TscAI	CASTG	2 cut(s)	598, 1308
TseI	GCWGC	1 cut(s)	292
TspDTI	ATGAA	5 cut(s)	237, 618, 1083, 1253, 1318
TspGWI	ACGGA	1 cut(s)	995
TspRI	CASTG	2 cut(s)	598, 1308
Van91I	CCANNNNNTGG	1 cut(s)	697
XapI	RAATTY	2 cut(s)	536, 712
XceI	RCATGY	4 cut(s)	50, 962, 1029, 1138
XmiI	GTMKAC	2 cut(s)	493, 875
XmnI	GAANNNNTTC	1 cut(s)	1325
XspI	CTAG	1 cut(s)	972
ZrmI	AGTACT	2 cut(s)	1156, 1219
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.