Rroxscaffold_2G00104700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006744
Physical Location & Seq
Forward (+)
27977371 .. 27978154
784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00104700.1

Sequence Viewer

Length: 474 bp
ATGAGGAACGAAGAGAAATCGAGGCCGGTGAGGAAGGCGTTGAGGGACGTGTCGAATAGCCACGGCGGCGGAAGATCCTCGATATTCTCAACCACGGCGAAGAAGAAAGACAAGGAATTGCAGAGGCCGAGGGTCGAACAAGAAGAACGCAAAGAAGAGGACCAAAACGATGTCGTTTTGGATCGCCTCTTGCTCGTTCAGTCCGATCTATCAGCCCTAATTAATCAGATTGATCAGCTAGTTGTGGAAGCGCTTAAATGTAAAGCAGGAGCAAGCAAAGAAGTTGAATCCTTCACACATTTCTTATCCGAAATGCATTCGTCTTTGAAGTCATGGGTGCCCAGATTTCAGAAAGCACTCTCTGCTCCTGCGGAAACGGTGGTTGTGAGTGAAGTAGAGAGTGGTGAGATTAAGAGTCCTGAAGTTGAGGGAAAGAGATTGAGAGCCTGGAAGAGTCTGATTCGGAGTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.78

Weight (kDa)

9.27

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 337
AciI CCGC 3 cut(s) 66, 69, 371
AclWI GGATC 2 cut(s) 69, 189
AcuI CTGAAG 1 cut(s) 441
AfeI AGCGCT 1 cut(s) 252
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 2 cut(s) 287, 328
AjiI CACGTC 1 cut(s) 49
AjnI CCWGG 1 cut(s) 446
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
AlwI GGATC 2 cut(s) 69, 189
Aor51HI AGCGCT 1 cut(s) 252
AoxI GGCC 2 cut(s) 23, 125
AseI ATTAAT 1 cut(s) 222
AspLEI GCGC 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 160
AsuHPI GGTGA 2 cut(s) 40, 416
AvaII GGWCC 1 cut(s) 160
BaeGI GKGCMC 1 cut(s) 342
BanI GGYRCC 1 cut(s) 337
BceAI ACGGC 2 cut(s) 79, 111
BciT130I CCWGG 1 cut(s) 448
BclI TGATCA 1 cut(s) 232
BfaI CTAG 1 cut(s) 239
BfoI RGCGCY 1 cut(s) 254
BglI GCCNNNNNGGC 1 cut(s) 66
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 448
Bme18I GGWCC 1 cut(s) 160
BmgBI CACGTC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 1 cut(s) 448
BsaJI CCNNGG 3 cut(s) 61, 93, 128
Bse118I RCCGGY 1 cut(s) 25
BseBI CCWGG 1 cut(s) 448
BseDI CCNNGG 3 cut(s) 61, 93, 128
BseSI GKGCMC 1 cut(s) 342
BshFI GGCC 2 cut(s) 25, 127
BshNI GGYRCC 1 cut(s) 337
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 2 cut(s) 25, 127
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 4 cut(s) 74, 181, 205, 232
BspACI CCGC 3 cut(s) 66, 69, 371
BspANI GGCC 2 cut(s) 25, 127
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 2 cut(s) 69, 189
BspT107I GGYRCC 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 3 cut(s) 61, 93, 128
BssMI GATC 4 cut(s) 74, 181, 205, 232
Bst2UI CCWGG 1 cut(s) 448
Bst4CI ACNGT 1 cut(s) 379
Bst6I CTCTTC 3 cut(s) 6, 150, 446
BstAPI GCANNNNNTGC 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 274
BstDSI CCRYGG 2 cut(s) 61, 93
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 4 cut(s) 77, 184, 208, 235
BstMBI GATC 4 cut(s) 74, 181, 205, 232
BstMWI GCNNNNNNNGC 2 cut(s) 66, 362
BstNI CCWGG 1 cut(s) 448
BstSCI CCNGG 1 cut(s) 446
BstSLI GKGCMC 1 cut(s) 342
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BsuRI GGCC 2 cut(s) 25, 127
BtgI CCRYGG 2 cut(s) 61, 93
BtrI CACGTC 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 274
CfoI GCGC 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 160
CviAII CATG 1 cut(s) 333
CviJI RGCY 6 cut(s) 25, 60, 127, 215, 238, 446
CviKI_1 RGCY 6 cut(s) 25, 60, 127, 215, 238, 446
DpnI GATC 4 cut(s) 76, 183, 207, 234
DpnII GATC 4 cut(s) 74, 181, 205, 232
Eam1104I CTCTTC 3 cut(s) 6, 150, 446
EarI CTCTTC 3 cut(s) 6, 150, 446
EciI GGCGGA 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 160
Eco47III AGCGCT 1 cut(s) 252
Eco57I CTGAAG 1 cut(s) 441
EcoRII CCWGG 1 cut(s) 446
EcoT22I ATGCAT 1 cut(s) 318
FaeI CATG 1 cut(s) 336
FaiI YATR 1 cut(s) 334
FaqI GGGAC 1 cut(s) 59
FatI CATG 1 cut(s) 332
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 67
Fsp4HI GCNGC 1 cut(s) 67
FspBI CTAG 1 cut(s) 239
GlaI GCGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 67
HaeII RGCGCY 1 cut(s) 254
HaeIII GGCC 2 cut(s) 25, 127
HapII CCGG 1 cut(s) 26
HhaI GCGC 1 cut(s) 253
Hin1II CATG 1 cut(s) 336
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HinfI GANTC 5 cut(s) 287, 415, 454, 460, 466
HpaII CCGG 1 cut(s) 26
HphI GGTGA 2 cut(s) 40, 416
Hpy188I TCNGA 6 cut(s) 205, 228, 310, 351, 459, 465
Hpy188III TCNNGA 1 cut(s) 419
HpyAV CCTTC 2 cut(s) 28, 301
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 121, 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 362
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 1 cut(s) 336
HspAI GCGC 1 cut(s) 251
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 4 cut(s) 74, 181, 205, 232
LmnI GCTCC 2 cut(s) 269, 370
LpnPI CCDG 7 cut(s) 39, 252, 355, 381, 432, 433, 460
MaeI CTAG 1 cut(s) 239
MaeII ACGT 1 cut(s) 48
MalI GATC 4 cut(s) 76, 183, 207, 234
MboI GATC 4 cut(s) 74, 181, 205, 232
MboII GAAGA 7 cut(s) 23, 84, 112, 115, 155, 167, 463
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 2 cut(s) 116, 219
MlyI GAGTC 2 cut(s) 424, 463
MnlI CCTC 9 cut(s) 15, 24, 36, 88, 117, 123, 151, 197, 421
Mph1103I ATGCAT 1 cut(s) 318
MseI TTAA 3 cut(s) 222, 255, 411
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 448
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 1 cut(s) 448
MwoI GCNNNNNNNGC 2 cut(s) 66, 362
NdeII GATC 4 cut(s) 74, 181, 205, 232
NlaIII CATG 1 cut(s) 336
NlaIV GGNNCC 1 cut(s) 339
NmeAIII GCCGAG 1 cut(s) 153
NsiI ATGCAT 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PctI GAATGC 1 cut(s) 316
PfeI GAWTC 2 cut(s) 287, 460
PkrI GCNGC 1 cut(s) 68
PleI GAGTC 2 cut(s) 423, 462
PpsI GAGTC 2 cut(s) 423, 462
PshBI ATTAAT 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 446
PspGI CCWGG 1 cut(s) 446
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 1 cut(s) 160
PsuI RGATCY 1 cut(s) 74
SaqAI TTAA 3 cut(s) 222, 255, 411
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 4 cut(s) 74, 181, 205, 232
Sau96I GGNCC 1 cut(s) 160
SchI GAGTC 2 cut(s) 424, 463
ScrFI CCNGG 1 cut(s) 448
SduI GDGCHC 1 cut(s) 342
SetI ASST 2 cut(s) 51, 240
SinI GGWCC 1 cut(s) 160
Sse9I AATT 2 cut(s) 116, 219
SsiI CCGC 3 cut(s) 66, 69, 371
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 446
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 1 cut(s) 51
TaqI TCGA 4 cut(s) 20, 53, 80, 135
TasI AATT 2 cut(s) 116, 219
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 2 cut(s) 287, 460
Tru1I TTAA 3 cut(s) 222, 255, 411
Tru9I TTAA 3 cut(s) 222, 255, 411
VpaK11BI GGWCC 1 cut(s) 160
VspI ATTAAT 1 cut(s) 222
XspI CTAG 1 cut(s) 239
Zsp2I ATGCAT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.