Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006744

Physical Location & Seq

Genomic Coordinates Reverse (-)

59823258 .. 59825304

Gene Structure 2047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG424400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGCAATTGCAGCCATGGGTGCCCAGATTTCAGAAGGCACTTTGTGCTCCTGCAGAAACGGTAGTTGTGAGTGAAGTTGAGAGTGGTGAGATTAAGAGTCCTGAAGTTGAGGGGAAAGGGATTGAGAGCCTGGAAGAGTCTGATTCAGAGTCGTTGATCTCGCCTTCTCCCCTTGTTTCGTGGCGTGCTGACTGCACTATCCAGAGAGGAAGACAGTTGTTTATGCTTACGCCGCTTCCCATATCAAAGTCTCTGTCATCCAAACCCCCAATGCCTTCCAAACCTATGGTGTTTGAGAGGGTTACATCTAATACTACAGATGGGCGACAGTTTTTTGGTACTACTAGTGGTGATGCAAATGATGATTTGCCTGAATTTGTAGCGATAGAGCCGATTCCCTCTAAGCCTTCTGATTCAGTTACTACTGAGACAGGAGGAGTTGTTGAGTCTGGCTTTGTTTCTACACCAGTGTCGAAAATTGGGGGCTCCATGGTTCTGAATTTGATGACTCCATGCTTAAAGTCTCCTCCTAAATCTTGTGTCCTGCTTGAACCCATTTCGGAAAAGGGACATCACCGGGTTTGTAATCGTAAATCTACCCCATATCCTGCTGGAATCAGATATTCTGGTGATTCCTCTAGCAGTGAAACTTCTGACGACATGGATGCCTCACCAGATTGGTGTATGTCACCACCTAAAACTTGTGTTTTACTGGAGCCACGTGATGAAAAGTCTTCAGATGAAGTAGGTCATCTTCAAGATACACAACTGAATGGGCCTCTTTTAAAAGATAATGAGGGTGTAGGAGGCATTCATCAAATCAAGACAGAGCCTGTAGGTGGTGGCAGATGTGCCATAGAAAGCACACCAATCTGGAAACAAGCTGGAAGTGTAGTAGTTCACAAAGGCAAACATCCTGGTGAGAATACTTTAAAGAGGGAGTTGTGGATTAAGTTTGAAGCAGCTTCTACAAATGAGCTCAGTATTGATGACTCTGTAACTCAAAAAAGACTTCTTGACCTATTGGATGAGGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

346

Amino Acids

37.4

Weight (kDa)

4.99

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12540 AT4G12540 AT4G12540 AT4G12540 AT4G12540
fragaria_vesca	FvH4_6g32410 FvH4_6g32410
malus_domestica	MD09G1202700.v1.1 MD17G1183900.v1.1
prunus_persica	Prupe.3G058900_v2.0.a1
pyrus_communis	pycom09g11960 pycom17g19330
rosa_chinensis	RchiOBHm_Chr2g0140551
rosa_laevigata	RLG00000019877
rosa_multiflora	Rmu_co8291533.1_g000001 Rmu_sc0002521.1_g000027 Rmu_ssc0000213.1_g000127
rosa_roxburghii	Rroxscaffold_153G00436640 Rroxscaffold_2G00104690 Rroxscaffold_2G00104700
rosa_rugosa	Rorug02G0363500
rosa_samantha	Rh2AG414500 Rh2BG424400 Rh2CG400900 Rh2DG434400
rosa_wichuraiana	Rw2G033950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AciI	CCGC	1 cut(s)	233
AcsI	RAATTY	2 cut(s)	374, 499
AcuI	CTGAAG	2 cut(s)	123, 720
AcvI	CACGTG	1 cut(s)	722
AdeI	CACNNNGTG	1 cut(s)	44
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	1 cut(s)	839
AgsI	TTSAA	3 cut(s)	551, 758, 959
AhlI	ACTAGT	1 cut(s)	344
AjnI	CCWGG	2 cut(s)	129, 916
AluBI	AGCT	3 cut(s)	884, 965, 979
AluI	AGCT	3 cut(s)	884, 965, 979
Alw21I	GWGCWC	2 cut(s)	49, 981
Alw26I	GTCTC	3 cut(s)	255, 422, 528
AlwNI	CAGNNNCTG	1 cut(s)	833
AoxI	GGCC	1 cut(s)	776
ApeKI	GCWGC	2 cut(s)	10, 962
ApoI	RAATTY	2 cut(s)	374, 499
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspS9I	GGNCC	1 cut(s)	776
AsuC2I	CCSGG	1 cut(s)	578
AsuHPI	GGTGA	7 cut(s)	98, 362, 566, 641, 663, 681, 932
BaeGI	GKGCMC	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	2 cut(s)	488, 981
BarI	GAAGNNNNNNTAC	2 cut(s)	738, 770
BbrPI	CACGTG	1 cut(s)	722
BbsI	GAAGAC	2 cut(s)	217, 726
Bbv12I	GWGCWC	2 cut(s)	49, 981
BbvI	GCAGC	2 cut(s)	22, 974
BccI	CCATC	1 cut(s)	314
BcgI	CGANNNNNNTGC	2 cut(s)	647, 681
BciT130I	CCWGG	2 cut(s)	131, 918
BcnI	CCSGG	1 cut(s)	578
BcoDI	GTCTC	3 cut(s)	255, 422, 528
BcuI	ACTAGT	1 cut(s)	344
BfaI	CTAG	2 cut(s)	345, 639
BfmI	CTRYAG	3 cut(s)	51, 315, 834
BisI	GCNGC	3 cut(s)	11, 233, 963
BlsI	GCNGC	3 cut(s)	12, 234, 964
Bme1390I	CCNGG	3 cut(s)	131, 578, 918
BmgT120I	GGNCC	1 cut(s)	776
BmiI	GGNNCC	3 cut(s)	21, 487, 717
BmrFI	CCNGG	3 cut(s)	131, 578, 918
BmsI	GCATC	2 cut(s)	343, 655
BpiI	GAAGAC	2 cut(s)	217, 726
BpmI	CTGGAG	1 cut(s)	734
BpuMI	CCSGG	1 cut(s)	578
BsaAI	YACGTR	1 cut(s)	722
BsaJI	CCNNGG	2 cut(s)	14, 489
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	839
Bse1I	ACTGG	2 cut(s)	467, 717
BseBI	CCWGG	2 cut(s)	131, 918
BseDI	CCNNGG	2 cut(s)	14, 489
BseGI	GGATG	4 cut(s)	257, 670, 913, 1033
BseLI	CCNNNNNNNGG	1 cut(s)	839
BseMII	CTCAG	2 cut(s)	417, 994
BseNI	ACTGG	2 cut(s)	467, 717
BseRI	GAGGAG	2 cut(s)	450, 516
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	2 cut(s)	22, 974
BsgI	GTGCAG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	778
BshNI	GGYRCC	1 cut(s)	19
BsiHKAI	GWGCWC	2 cut(s)	49, 981
BsiSI	CCGG	1 cut(s)	577
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	1 cut(s)	839
BsmAI	GTCTC	3 cut(s)	255, 422, 528
BsmFI	GGGAC	1 cut(s)	582
BsmI	GAATGC	1 cut(s)	810
BsnI	GGCC	1 cut(s)	778
Bsp1286I	GDGCHC	4 cut(s)	24, 49, 488, 981
Bsp143I	GATC	1 cut(s)	156
Bsp19I	CCATGG	2 cut(s)	14, 489
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	778
BspCNI	CTCAG	2 cut(s)	418, 993
BspHI	TCATGA	1 cut(s)	1037
BspLI	GGNNCC	3 cut(s)	21, 487, 717
BspMAI	CTGCAG	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	19
BsrI	ACTGG	2 cut(s)	467, 717
BssECI	CCNNGG	2 cut(s)	14, 489
BssMI	GATC	1 cut(s)	156
BssT1I	CCWWGG	2 cut(s)	14, 489
Bst2UI	CCWGG	2 cut(s)	131, 918
Bst4CI	ACNGT	3 cut(s)	61, 216, 330
Bst6I	CTCTTC	1 cut(s)	129
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	722
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	3 cut(s)	402, 426, 980
BstDSI	CCRYGG	2 cut(s)	14, 489
BstF5I	GGATG	4 cut(s)	257, 670, 913, 1033
BstKTI	GATC	1 cut(s)	159
BstMAI	GTCTC	3 cut(s)	255, 422, 528
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 19, 44, 232
BstNI	CCWGG	2 cut(s)	131, 918
BstSCI	CCNGG	3 cut(s)	129, 576, 916
BstSFI	CTRYAG	3 cut(s)	51, 315, 834
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	22, 974
BstV2I	GAAGAC	2 cut(s)	217, 726
BstXI	CCANNNNNNTGG	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	778
BtgI	CCRYGG	2 cut(s)	14, 489
BtsCI	GGATG	4 cut(s)	257, 670, 913, 1033
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	2 cut(s)	474, 649
Cac8I	GCNNGC	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	833
CciI	TCATGA	1 cut(s)	1037
Cfr13I	GGNCC	1 cut(s)	776
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	5 cut(s)	15, 490, 513, 661, 1038
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	3 cut(s)	402, 426, 980
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
DraI	TTTAAA	2 cut(s)	786, 933
DraIII	CACNNNGTG	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	979
Eco130I	CCWWGG	2 cut(s)	14, 489
Eco24I	GRGCYC	2 cut(s)	488, 981
Eco53kI	GAGCTC	1 cut(s)	979
Eco57I	CTGAAG	2 cut(s)	123, 720
Eco72I	CACGTG	1 cut(s)	722
EcoICRI	GAGCTC	1 cut(s)	979
EcoRII	CCWGG	2 cut(s)	129, 916
EcoT14I	CCWWGG	2 cut(s)	14, 489
EcoT38I	GRGCYC	2 cut(s)	488, 981
ErhI	CCWWGG	2 cut(s)	14, 489
FaeI	CATG	5 cut(s)	18, 493, 516, 664, 1041
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	5 cut(s)	14, 489, 512, 660, 1037
Fnu4HI	GCNGC	3 cut(s)	11, 233, 963
FokI	GGATG	3 cut(s)	244, 677, 900
FriOI	GRGCYC	2 cut(s)	488, 981
Fsp4HI	GCNGC	3 cut(s)	11, 233, 963
FspBI	CTAG	2 cut(s)	345, 639
GluI	GCNGC	3 cut(s)	11, 233, 963
GsuI	CTGGAG	1 cut(s)	734
HaeIII	GGCC	1 cut(s)	778
HapII	CCGG	1 cut(s)	577
Hin1II	CATG	5 cut(s)	18, 493, 516, 664, 1041
HpaII	CCGG	1 cut(s)	577
HphI	GGTGA	7 cut(s)	98, 362, 566, 641, 663, 681, 932
Hpy166II	GTNNAC	1 cut(s)	901
Hpy188I	TCNGA	9 cut(s)	33, 142, 148, 412, 498, 562, 620, 655, 739
Hpy188III	TCNNGA	7 cut(s)	101, 202, 758, 823, 874, 1016, 1038
Hpy8I	GTNNAC	1 cut(s)	901
HpyAV	CCTTC	4 cut(s)	28, 174, 285, 417
HpyCH4III	ACNGT	3 cut(s)	61, 216, 330
HpyCH4IV	ACGT	1 cut(s)	721
HpyCH4V	TGCA	5 cut(s)	4, 10, 53, 195, 356
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 19, 44, 232
HpyF3I	CTNAG	3 cut(s)	402, 426, 980
HpySE526I	ACGT	1 cut(s)	721
Hsp92II	CATG	5 cut(s)	18, 493, 516, 664, 1041
Kzo9I	GATC	1 cut(s)	156
LmnI	GCTCC	3 cut(s)	52, 491, 715
Lsp1109I	GCAGC	2 cut(s)	22, 974
LweI	GCATC	2 cut(s)	343, 655
MaeI	CTAG	2 cut(s)	345, 639
MaeII	ACGT	1 cut(s)	721
MaeIII	GTNAC	4 cut(s)	301, 418, 687, 997
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	4 cut(s)	146, 222, 726, 746
MfeI	CAATTG	1 cut(s)	5
MhlI	GDGCHC	4 cut(s)	24, 49, 488, 981
MluCI	AATT	4 cut(s)	5, 374, 477, 499
MlyI	GAGTC	6 cut(s)	106, 146, 158, 455, 502, 986
MseI	TTAA	5 cut(s)	93, 518, 785, 932, 951
MslI	CAYNNNNRTG	1 cut(s)	918
MspI	CCGG	1 cut(s)	577
MspR9I	CCNGG	3 cut(s)	131, 578, 918
MunI	CAATTG	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	810
MvaI	CCWGG	2 cut(s)	131, 918
MwoI	GCNNNNNNNGC	4 cut(s)	10, 19, 44, 232
NciI	CCSGG	1 cut(s)	578
NcoI	CCATGG	2 cut(s)	14, 489
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	5 cut(s)	18, 493, 516, 664, 1041
NlaIV	GGNNCC	3 cut(s)	21, 487, 717
NmuCI	GTSAC	1 cut(s)	687
PagI	TCATGA	1 cut(s)	1037
PctI	GAATGC	1 cut(s)	810
PfeI	GAWTC	5 cut(s)	143, 394, 413, 615, 632
PkrI	GCNGC	3 cut(s)	12, 234, 964
PleI	GAGTC	6 cut(s)	105, 145, 157, 454, 502, 986
PmaCI	CACGTG	1 cut(s)	722
PmlI	CACGTG	1 cut(s)	722
PpsI	GAGTC	6 cut(s)	105, 145, 157, 454, 502, 986
Ppu21I	YACGTR	1 cut(s)	722
Psp124BI	GAGCTC	1 cut(s)	981
Psp6I	CCWGG	2 cut(s)	129, 916
PspCI	CACGTG	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	129, 916
PspN4I	GGNNCC	3 cut(s)	21, 487, 717
PspPI	GGNCC	1 cut(s)	776
PstI	CTGCAG	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	833
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
RseI	CAYNNNNRTG	1 cut(s)	918
SacI	GAGCTC	1 cut(s)	981
SaqAI	TTAA	5 cut(s)	93, 518, 785, 932, 951
SatI	GCNGC	3 cut(s)	11, 233, 963
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	1 cut(s)	776
SchI	GAGTC	6 cut(s)	106, 146, 158, 455, 502, 986
ScrFI	CCNGG	3 cut(s)	131, 578, 918
SduI	GDGCHC	4 cut(s)	24, 49, 488, 981
SetI	ASST	9 cut(s)	286, 697, 724, 751, 841, 886, 967, 981, 1023
SfaNI	GCATC	2 cut(s)	343, 655
SfcI	CTRYAG	3 cut(s)	51, 315, 834
SmiMI	CAYNNNNRTG	1 cut(s)	918
SpeI	ACTAGT	1 cut(s)	344
Sse9I	AATT	4 cut(s)	5, 374, 477, 499
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	2 cut(s)	345, 639
SstI	GAGCTC	1 cut(s)	981
StyD4I	CCNGG	3 cut(s)	129, 576, 916
StyI	CCWWGG	2 cut(s)	14, 489
TaaI	ACNGT	3 cut(s)	61, 216, 330
TaiI	ACGT	1 cut(s)	724
TaqI	TCGA	1 cut(s)	473
TasI	AATT	4 cut(s)	5, 374, 477, 499
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	5 cut(s)	143, 394, 413, 615, 632
Tru1I	TTAA	5 cut(s)	93, 518, 785, 932, 951
Tru9I	TTAA	5 cut(s)	93, 518, 785, 932, 951
TscAI	CASTG	2 cut(s)	474, 649
TseFI	GTSAC	1 cut(s)	687
TseI	GCWGC	2 cut(s)	10, 962
Tsp45I	GTSAC	1 cut(s)	687
TspDTI	ATGAA	4 cut(s)	741, 756, 803, 1026
TspRI	CASTG	2 cut(s)	474, 649
XapI	RAATTY	2 cut(s)	374, 499
XspI	CTAG	2 cut(s)	345, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.