Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006744

Physical Location & Seq

Genomic Coordinates Reverse (-)

62778091 .. 62780131

Gene Structure 2041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG434400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGAGGAACGAAGAGAAATCGGGGCCGGTGAGGAAGGCGTTGAGGGACGTGTCGAATAGCCACGGCGGCGAAAGACCCTCGATATTCTCAACCACGGCGAAGAAGAAAGACAAGGAATTGCAGAGGCCGAGGGTCGAACAAGAAGAACGCAAAGAAGAGGACCAAAACGATGTCGTTTTGGATCGCCTCTTGCTCGTTCAGTCCGATCTATCAGCCCTAATTAATCAGATTGATCAGCTAGTTGTGGAAGCGTTTAAATGTAAAGCAGGAGCAAGCAAAGAAGTTGAATCCTTCACACATGTCTTATCCGAAATGCATTCGTCGTTGAAGCCATGGGTGCCCAGATTTCAGAAGGCACTTTCTGCTCCTGCAGAAACGGTGGTTGTGAGTGAAGTTGAGAGTGGTGAGATTAAGAGTCCTGAAGTTGAGGGGAAAGGGATTGAGAGCCTGGAAGAGTCTGATTCAGAGTCGTTGATCTCGCCTTCTCCCCTTGTTTCGTGGCGTGCTGACTGCACTATCCAGAGAGGAAGACAGTTGTTTATGCTTACGCCGCTTCCCATATCAAAGTCTCTGTCATCCAAACCCCCAATGCCTTCCAAACCAATGGTGTTTGAGAGGGTTACATCTAATACTACAGATAGACGACAGTTTTTTGGTACTACTAGTGGTGATGCAAATGATGATTTGCCTGAATTTGTAGCGATAGAGCCGATTCCCTCTAAGCCTTCTGATTCAGTTACTACTGAGACAGGAGGAGTTGTTGAGTCTGGCTTTGTTTCTACACCAGTGTCGAAAATTGGGGGCTCCATGGTTCTGAATTTGATGACTCCATGCTTAAAGTCTCCTCCTAAATCTTGTGTCCTGCTTGAACCCATTTCGGAAAAGGGACATCACCAGGTTTGTAATCGTAAATCTACCCCATATCCTGCTGGAATCAGATATTCTGGTGATTCCTCTAGCAGTGAAACTTCTGACGACATGGATGCCTCACCAGATTGGTGTTTGTCACCACCTAAAACTTGTGTTTTACTGGAGCCACGTGATGAAAAGTCTTCAGATGAAGTAGGTCATCTTCAAGATACACAACTGAATGGGCCTCTTTTAAAAGATAATGAGGGTGTAGGAGGCATTCAACAAATCAAGACGGAGCCTGTAGGTGGTGGCAGATGTGCCATAGAAAGCACACCAATCTGGAAACAAGCTGGAAGCGTAGTAGTTCACAAAGGCAAACATCCTGGTGAGAATACTTTAAAGAGGGAGTTGTGGATTAAGTTTGAAGCAGCTTCTACAAATGAGCTCAGTATTGATGACTCTGTAACTCAAAAAAGACTTCTTGACCTATTGGATGAGGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

452

Amino Acids

49.38

Weight (kDa)

5.2

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12540 AT4G12540 AT4G12540 AT4G12540 AT4G12540
fragaria_vesca	FvH4_6g32410 FvH4_6g32410
malus_domestica	MD09G1202700.v1.1 MD17G1183900.v1.1
prunus_persica	Prupe.3G058900_v2.0.a1
pyrus_communis	pycom09g11960 pycom17g19330
rosa_chinensis	RchiOBHm_Chr2g0140551
rosa_laevigata	RLG00000019877
rosa_multiflora	Rmu_co8291533.1_g000001 Rmu_sc0002521.1_g000027 Rmu_ssc0000213.1_g000127
rosa_roxburghii	Rroxscaffold_153G00436640 Rroxscaffold_2G00104690 Rroxscaffold_2G00104700
rosa_rugosa	Rorug02G0363500
rosa_samantha	Rh2AG414500 Rh2BG424400 Rh2CG400900 Rh2DG434400
rosa_wichuraiana	Rw2G033950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AciI	CCGC	2 cut(s)	66, 551
AclWI	GGATC	1 cut(s)	189
AcsI	RAATTY	2 cut(s)	692, 817
AcuI	CTGAAG	2 cut(s)	441, 1038
AcvI	CACGTG	1 cut(s)	1040
AfaI	GTAC	1 cut(s)	658
AfiI	CCNNNNNNNGG	1 cut(s)	1157
AflIII	ACRYGT	2 cut(s)	48, 298
AgsI	TTSAA	6 cut(s)	287, 328, 869, 1076, 1133, 1277
AhlI	ACTAGT	1 cut(s)	662
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	3 cut(s)	447, 894, 1234
AluBI	AGCT	4 cut(s)	238, 1202, 1283, 1297
AluI	AGCT	4 cut(s)	238, 1202, 1283, 1297
Alw21I	GWGCWC	1 cut(s)	1299
Alw26I	GTCTC	3 cut(s)	573, 740, 846
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	3 cut(s)	23, 125, 1094
ApeKI	GCWGC	1 cut(s)	1280
ApoI	RAATTY	2 cut(s)	692, 817
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
AseI	ATTAAT	1 cut(s)	222
AspS9I	GGNCC	3 cut(s)	23, 160, 1094
AsuHPI	GGTGA	8 cut(s)	40, 416, 680, 884, 959, 981, 999, 1250
AvaII	GGWCC	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	342
BanI	GGYRCC	1 cut(s)	337
BanII	GRGCYC	2 cut(s)	806, 1299
BarI	GAAGNNNNNNTAC	2 cut(s)	1056, 1088
BbrPI	CACGTG	1 cut(s)	1040
BbsI	GAAGAC	2 cut(s)	535, 1044
Bbv12I	GWGCWC	1 cut(s)	1299
BbvI	GCAGC	1 cut(s)	1292
BceAI	ACGGC	2 cut(s)	79, 111
BcgI	CGANNNNNNTGC	2 cut(s)	965, 999
BciT130I	CCWGG	3 cut(s)	449, 896, 1236
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	3 cut(s)	573, 740, 846
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	3 cut(s)	239, 663, 957
BfmI	CTRYAG	3 cut(s)	369, 633, 1152
BglI	GCCNNNNNGGC	1 cut(s)	66
BisI	GCNGC	3 cut(s)	67, 551, 1281
BlsI	GCNGC	3 cut(s)	68, 552, 1282
Bme1390I	CCNGG	3 cut(s)	449, 896, 1236
Bme18I	GGWCC	1 cut(s)	160
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	3 cut(s)	23, 160, 1094
BmiI	GGNNCC	5 cut(s)	24, 339, 805, 1035, 1149
BmrFI	CCNGG	3 cut(s)	449, 896, 1236
BmsI	GCATC	2 cut(s)	661, 973
BpiI	GAAGAC	2 cut(s)	535, 1044
BpmI	CTGGAG	1 cut(s)	1052
BsaAI	YACGTR	1 cut(s)	1040
BsaJI	CCNNGG	5 cut(s)	61, 93, 128, 332, 807
BsaXI	ACNNNNNCTCC	2 cut(s)	744, 774
Bsc4I	CCNNNNNNNGG	1 cut(s)	1157
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	2 cut(s)	785, 1035
BseBI	CCWGG	3 cut(s)	449, 896, 1236
BseDI	CCNNGG	5 cut(s)	61, 93, 128, 332, 807
BseGI	GGATG	4 cut(s)	575, 988, 1231, 1351
BseLI	CCNNNNNNNGG	1 cut(s)	1157
BseMII	CTCAG	2 cut(s)	735, 1312
BseNI	ACTGG	2 cut(s)	785, 1035
BseRI	GAGGAG	2 cut(s)	768, 834
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	1292
BsgI	GTGCAG	1 cut(s)	496
BshFI	GGCC	3 cut(s)	25, 127, 1096
BshNI	GGYRCC	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	1299
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	2 cut(s)	59, 900
BslI	CCNNNNNNNGG	1 cut(s)	1157
BsmAI	GTCTC	3 cut(s)	573, 740, 846
BsmFI	GGGAC	2 cut(s)	59, 900
BsmI	GAATGC	2 cut(s)	316, 1128
BsnI	GGCC	3 cut(s)	25, 127, 1096
Bsp1286I	GDGCHC	3 cut(s)	342, 806, 1299
Bsp143I	GATC	4 cut(s)	181, 205, 232, 474
Bsp19I	CCATGG	2 cut(s)	332, 807
BspACI	CCGC	2 cut(s)	66, 551
BspANI	GGCC	3 cut(s)	25, 127, 1096
BspCNI	CTCAG	2 cut(s)	736, 1311
BspHI	TCATGA	1 cut(s)	1355
BspLI	GGNNCC	5 cut(s)	24, 339, 805, 1035, 1149
BspMAI	CTGCAG	1 cut(s)	373
BspPI	GGATC	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	785, 1035
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	5 cut(s)	61, 93, 128, 332, 807
BssMI	GATC	4 cut(s)	181, 205, 232, 474
BssT1I	CCWWGG	2 cut(s)	332, 807
Bst2UI	CCWGG	3 cut(s)	449, 896, 1236
Bst4CI	ACNGT	3 cut(s)	379, 534, 648
Bst6I	CTCTTC	3 cut(s)	6, 150, 447
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstBAI	YACGTR	1 cut(s)	1040
BstC8I	GCNNGC	2 cut(s)	274, 504
BstDEI	CTNAG	3 cut(s)	720, 744, 1298
BstDSI	CCRYGG	4 cut(s)	61, 93, 332, 807
BstF5I	GGATG	4 cut(s)	575, 988, 1231, 1351
BstKTI	GATC	4 cut(s)	184, 208, 235, 477
BstMAI	GTCTC	3 cut(s)	573, 740, 846
BstMBI	GATC	4 cut(s)	181, 205, 232, 474
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 337, 362, 550
BstNI	CCWGG	3 cut(s)	449, 896, 1236
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	3 cut(s)	447, 894, 1234
BstSFI	CTRYAG	3 cut(s)	369, 633, 1152
BstSLI	GKGCMC	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	1292
BstV2I	GAAGAC	2 cut(s)	535, 1044
BstXI	CCANNNNNNTGG	1 cut(s)	604
BsuRI	GGCC	3 cut(s)	25, 127, 1096
BtgI	CCRYGG	4 cut(s)	61, 93, 332, 807
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	4 cut(s)	575, 988, 1231, 1351
BtsI	GCAGTG	1 cut(s)	967
BtsIMutI	CAGTG	2 cut(s)	792, 967
Cac8I	GCNNGC	2 cut(s)	274, 504
CciI	TCATGA	1 cut(s)	1355
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	3 cut(s)	23, 160, 1094
CsiI	ACCWGGT	1 cut(s)	894
Csp6I	GTAC	1 cut(s)	657
CviAII	CATG	6 cut(s)	299, 333, 808, 831, 979, 1356
CviQI	GTAC	1 cut(s)	657
DdeI	CTNAG	3 cut(s)	720, 744, 1298
DpnI	GATC	4 cut(s)	183, 207, 234, 476
DpnII	GATC	4 cut(s)	181, 205, 232, 474
DraI	TTTAAA	3 cut(s)	256, 1104, 1251
Eam1104I	CTCTTC	3 cut(s)	6, 150, 447
EarI	CTCTTC	3 cut(s)	6, 150, 447
Ecl136II	GAGCTC	1 cut(s)	1297
Eco130I	CCWWGG	2 cut(s)	332, 807
Eco24I	GRGCYC	2 cut(s)	806, 1299
Eco47I	GGWCC	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	1297
Eco57I	CTGAAG	2 cut(s)	441, 1038
Eco72I	CACGTG	1 cut(s)	1040
EcoICRI	GAGCTC	1 cut(s)	1297
EcoRII	CCWGG	3 cut(s)	447, 894, 1234
EcoT14I	CCWWGG	2 cut(s)	332, 807
EcoT22I	ATGCAT	1 cut(s)	318
EcoT38I	GRGCYC	2 cut(s)	806, 1299
ErhI	CCWWGG	2 cut(s)	332, 807
FaeI	CATG	6 cut(s)	302, 336, 811, 834, 982, 1359
FaqI	GGGAC	2 cut(s)	59, 900
FatI	CATG	6 cut(s)	298, 332, 807, 830, 978, 1355
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	3 cut(s)	67, 551, 1281
FokI	GGATG	3 cut(s)	562, 995, 1218
FriOI	GRGCYC	2 cut(s)	806, 1299
Fsp4HI	GCNGC	3 cut(s)	67, 551, 1281
FspBI	CTAG	3 cut(s)	239, 663, 957
GluI	GCNGC	3 cut(s)	67, 551, 1281
GsuI	CTGGAG	1 cut(s)	1052
HaeIII	GGCC	3 cut(s)	25, 127, 1096
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	6 cut(s)	302, 336, 811, 834, 982, 1359
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	8 cut(s)	40, 416, 680, 884, 959, 981, 999, 1250
Hpy166II	GTNNAC	1 cut(s)	1219
Hpy188III	TCNNGA	7 cut(s)	419, 520, 1076, 1141, 1192, 1334, 1356
Hpy8I	GTNNAC	1 cut(s)	1219
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	6 cut(s)	28, 301, 346, 492, 603, 735
HpyCH4III	ACNGT	3 cut(s)	379, 534, 648
HpyCH4IV	ACGT	2 cut(s)	48, 1039
HpyCH4V	TGCA	5 cut(s)	121, 316, 371, 513, 674
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 337, 362, 550
HpyF3I	CTNAG	3 cut(s)	720, 744, 1298
HpySE526I	ACGT	2 cut(s)	48, 1039
Hsp92II	CATG	6 cut(s)	302, 336, 811, 834, 982, 1359
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	181, 205, 232, 474
LmnI	GCTCC	5 cut(s)	269, 370, 809, 1033, 1147
Lsp1109I	GCAGC	1 cut(s)	1292
LweI	GCATC	2 cut(s)	661, 973
MabI	ACCWGGT	1 cut(s)	894
MaeI	CTAG	3 cut(s)	239, 663, 957
MaeII	ACGT	2 cut(s)	48, 1039
MaeIII	GTNAC	4 cut(s)	619, 736, 1005, 1315
MalI	GATC	4 cut(s)	183, 207, 234, 476
MboI	GATC	4 cut(s)	181, 205, 232, 474
MboII	GAAGA	9 cut(s)	23, 112, 115, 155, 167, 464, 540, 1044, 1064
MhlI	GDGCHC	3 cut(s)	342, 806, 1299
MluCI	AATT	5 cut(s)	116, 219, 692, 795, 817
MlyI	GAGTC	6 cut(s)	424, 464, 476, 773, 820, 1304
Mph1103I	ATGCAT	1 cut(s)	318
MseI	TTAA	7 cut(s)	222, 255, 411, 836, 1103, 1250, 1269
MslI	CAYNNNNRTG	1 cut(s)	1236
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	3 cut(s)	449, 896, 1236
Mva1269I	GAATGC	2 cut(s)	316, 1128
MvaI	CCWGG	3 cut(s)	449, 896, 1236
MwoI	GCNNNNNNNGC	4 cut(s)	66, 337, 362, 550
NcoI	CCATGG	2 cut(s)	332, 807
NdeII	GATC	4 cut(s)	181, 205, 232, 474
NlaIII	CATG	6 cut(s)	302, 336, 811, 834, 982, 1359
NlaIV	GGNNCC	5 cut(s)	24, 339, 805, 1035, 1149
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	1005
NsiI	ATGCAT	1 cut(s)	318
NspI	RCATGY	1 cut(s)	302
PagI	TCATGA	1 cut(s)	1355
PciI	ACATGT	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PctI	GAATGC	2 cut(s)	316, 1128
PfeI	GAWTC	6 cut(s)	287, 461, 712, 731, 933, 950
PkrI	GCNGC	3 cut(s)	68, 552, 1282
PleI	GAGTC	6 cut(s)	423, 463, 475, 772, 820, 1304
PmaCI	CACGTG	1 cut(s)	1040
PmlI	CACGTG	1 cut(s)	1040
PpsI	GAGTC	6 cut(s)	423, 463, 475, 772, 820, 1304
Ppu21I	YACGTR	1 cut(s)	1040
PscI	ACATGT	1 cut(s)	298
PshBI	ATTAAT	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	1299
Psp6I	CCWGG	3 cut(s)	447, 894, 1234
PspCI	CACGTG	1 cut(s)	1040
PspGI	CCWGG	3 cut(s)	447, 894, 1234
PspN4I	GGNNCC	5 cut(s)	24, 339, 805, 1035, 1149
PspPI	GGNCC	3 cut(s)	23, 160, 1094
PstI	CTGCAG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	658
RsaNI	GTAC	1 cut(s)	657
RseI	CAYNNNNRTG	1 cut(s)	1236
SacI	GAGCTC	1 cut(s)	1299
SaqAI	TTAA	7 cut(s)	222, 255, 411, 836, 1103, 1250, 1269
SatI	GCNGC	3 cut(s)	67, 551, 1281
Sau3AI	GATC	4 cut(s)	181, 205, 232, 474
Sau96I	GGNCC	3 cut(s)	23, 160, 1094
SchI	GAGTC	6 cut(s)	424, 464, 476, 773, 820, 1304
ScrFI	CCNGG	3 cut(s)	449, 896, 1236
SduI	GDGCHC	3 cut(s)	342, 806, 1299
SexAI	ACCWGGT	1 cut(s)	894
SfaNI	GCATC	2 cut(s)	661, 973
SfcI	CTRYAG	3 cut(s)	369, 633, 1152
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	1236
SpeI	ACTAGT	1 cut(s)	662
Sse9I	AATT	5 cut(s)	116, 219, 692, 795, 817
SsiI	CCGC	2 cut(s)	66, 551
SspMI	CTAG	3 cut(s)	239, 663, 957
SstI	GAGCTC	1 cut(s)	1299
StyD4I	CCNGG	3 cut(s)	447, 894, 1234
StyI	CCWWGG	2 cut(s)	332, 807
TaaI	ACNGT	3 cut(s)	379, 534, 648
TaiI	ACGT	2 cut(s)	51, 1042
TaqI	TCGA	4 cut(s)	53, 80, 135, 791
TasI	AATT	5 cut(s)	116, 219, 692, 795, 817
TauI	GCSGC	2 cut(s)	69, 553
TfiI	GAWTC	6 cut(s)	287, 461, 712, 731, 933, 950
Tru1I	TTAA	7 cut(s)	222, 255, 411, 836, 1103, 1250, 1269
Tru9I	TTAA	7 cut(s)	222, 255, 411, 836, 1103, 1250, 1269
TscAI	CASTG	2 cut(s)	792, 967
TseFI	GTSAC	1 cut(s)	1005
TseI	GCWGC	1 cut(s)	1280
Tsp45I	GTSAC	1 cut(s)	1005
TspDTI	ATGAA	3 cut(s)	1059, 1074, 1344
TspGWI	ACGGA	1 cut(s)	1160
TspRI	CASTG	2 cut(s)	792, 967
VpaK11BI	GGWCC	1 cut(s)	160
VspI	ATTAAT	1 cut(s)	222
XapI	RAATTY	2 cut(s)	692, 817
XceI	RCATGY	1 cut(s)	302
XspI	CTAG	3 cut(s)	239, 663, 957
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.