MD17G1183900.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
21720536 .. 21722723
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1183900.v1.1.491

Sequence Viewer

Length: 1461 bp
ATGCCGAGGAACGAAGAGAAAGGGAGGTCAGCGAGGACAGCGCTGAGGGAGATATCGAACAACAATGGCGGCAGATGCGGCGGCGGAGTAAGGTTCTCTAAATTCTCCGCCACCGCCAAGAAGAAGGAAAAGGAAGGGCACAAGCTTAGGGTCGAAGAACATGATAAAGAAGAAAAGGACCACCAAAACGACGACGCTCTCGATCGGCTCCTGCTCGTTCAGTCCGATCTCTCCGCCCTAACTCACCAGATTGATGAATTGGTTGTGCAAGCATTTAAATGCCGAGGAAAAGCAACAAAAGAAGTCGAATCGTTCGTGAATTTCTTGTCCGAAATGCTTTCGTCTTTGAAGCCATGGGTGCCCAGGTTTCAGAAGGCACTCTCCGATCCAACGGAGTATGCTGCAGATGAAGTCGAAAGGGTAGAGATTGAGAGTCCACAAGACTCCTTAATCTCTCCTTCCCCCCTTGTGTCCTGGCGCGCGGAGTGCACTATTGAAAGAGGGAGACATCTGTTTAAGCTAACCCCTCTTCCCATTTCAAAGTCTCTGTCATCCAGACCCCCGGTCCCTTCTAGGTCATCAGTCTTTGAGAGAATTACTTCATGTACCGTCGATAGGATACCCAAGTTCAAGGCCAATTTCGGAGATGCAACTGATAATTCGCTTGACCTCATGGAAACAAAGTCAACTCCAAGTAAGCCTTCTGATTCGGTTGCTACTGAAGAAGGAAGCAGCCTTGAGCCTGAGTTTGTTTCTCCTCCGCCAATGTTTCCGAAACATGGGGGATCCATGGTTGTGAATGTGATGACTCCATGCCTAAAAATGTCTCCTCCTAAATCATGTGTTGTGCTTGAACCCATTTCGGAGTCTTCTCCCAAGGGTCATCATGCGGTTCATAAGTCCACCCCTTTTCCTGTTGGATTCACATATTCCAGTGATTCCTCTGGCAACGAAGCTTCTGGGGATCTCGCTTTCCGTTATCCGGAGCTGTTGGCGCTACAACTGCCGTTCCAATCAGGAATTAGAAAGAACCATGTTGAATCATCACCAGAATGGTGCATATCGCCTCCTAAAACTTGTGTTTTACTTGATCCCCATGATGAAAAGTCTCCGGGCAGCGCTGCTACTGATTTACAATTGCCAATTACCGGGCGTCTTCTAGATAAGCAAATTAATTTGTCTGTATCAAAAGAGAATGGTTGTCAAGGAGGCACTCACCCAATCAAGACATCTTGTCTTCAAGAGACTGCAGGTGGCAGATTTTCGCTGATAGAAAGCACTCCCATCTGGAAAGAAGCTGAAAGCGTTGTTCGAACGGGCAAACATCCTGGTGAGAATACTTTAAAGAGGGAGCTATGGACAAAGTTTGAAGCAGCTTCTTTGAATGGGGTTCGATTTAACGACACTGTAACTCACAAGGGATTTCTTGACCGATTGGATGAGGTTGTCGATGGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

487

Amino Acids

53.53

Weight (kDa)

6.2

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1241
Acc36I ACCTGC 1 cut(s) 1241
AccB1I GGYRCC 1 cut(s) 358
AccII CGCG 2 cut(s) 480, 482
AccIII TCCGGA 1 cut(s) 982
AclWI GGATC 5 cut(s) 380, 780, 793, 972, 1085
AcsI RAATTY 2 cut(s) 101, 319
AcuI CTGAAG 1 cut(s) 741
AcyI GRCGYC 1 cut(s) 1153
AfaI GTAC 1 cut(s) 607
AfeI AGCGCT 2 cut(s) 42, 1120
AfiI CCNNNNNNNGG 4 cut(s) 615, 779, 982, 1148
AgsI TTSAA 9 cut(s) 349, 497, 540, 631, 854, 1040, 1241, 1370, 1384
AhdI GACNNNNNGTC 2 cut(s) 563, 1233
AjnI CCWGG 3 cut(s) 362, 473, 1327
AjuI GAANNNNNNNTTGG 2 cut(s) 685, 717
AluBI AGCT 7 cut(s) 145, 520, 956, 988, 1298, 1354, 1376
AluI AGCT 7 cut(s) 145, 520, 956, 988, 1298, 1354, 1376
Alw21I GWGCWC 1 cut(s) 491
Alw26I GTCTC 5 cut(s) 499, 549, 831, 1113, 1238
Alw44I GTGCAC 1 cut(s) 487
AlwI GGATC 5 cut(s) 380, 780, 793, 972, 1085
Aor13HI TCCGGA 1 cut(s) 982
Aor51HI AGCGCT 2 cut(s) 42, 1120
AoxI GGCC 1 cut(s) 633
ApaLI GTGCAC 1 cut(s) 487
ApeKI GCWGC 5 cut(s) 401, 732, 1116, 1121, 1373
ApoI RAATTY 2 cut(s) 101, 319
ArsI GACNNNNNNTTYG 2 cut(s) 533, 565
AseI ATTAAT 1 cut(s) 1173
Asp700I GAANNNNTTC 1 cut(s) 598
AspLEI GCGC 5 cut(s) 43, 480, 482, 997, 1121
AspS9I GGNCC 2 cut(s) 178, 565
AsuC2I CCSGG 3 cut(s) 563, 1113, 1150
AsuHPI GGTGA 4 cut(s) 236, 1038, 1208, 1343
AsuII TTCGAA 1 cut(s) 1312
AvaII GGWCC 2 cut(s) 178, 565
BaeGI GKGCMC 3 cut(s) 141, 363, 491
BaeI ACNNNNGTAYC 2 cut(s) 611, 644
BamHI GGATCC 1 cut(s) 785
BanI GGYRCC 1 cut(s) 358
BbsI GAAGAC 3 cut(s) 861, 1148, 1229
Bbv12I GWGCWC 1 cut(s) 491
BbvCI CCTCAGC 1 cut(s) 44
BbvI GCAGC 5 cut(s) 388, 744, 1108, 1128, 1385
BccI CCATC 2 cut(s) 1292, 1445
BceAI ACGGC 1 cut(s) 991
BciT130I CCWGG 3 cut(s) 364, 475, 1329
BciVI GTATCC 1 cut(s) 612
BcnI CCSGG 3 cut(s) 563, 1113, 1150
BcoDI GTCTC 5 cut(s) 499, 549, 831, 1113, 1238
BfaI CTAG 2 cut(s) 573, 1160
BfmI CTRYAG 2 cut(s) 402, 1248
BfoI RGCGCY 3 cut(s) 44, 998, 1122
BfuAI ACCTGC 1 cut(s) 1241
BfuI GTATCC 1 cut(s) 612
BisI GCNGC 8 cut(s) 70, 79, 82, 402, 733, 1117, 1122, 1374
BlsI GCNGC 8 cut(s) 71, 80, 83, 403, 734, 1118, 1123, 1375
Bme1390I CCNGG 6 cut(s) 364, 475, 563, 1113, 1150, 1329
Bme18I GGWCC 2 cut(s) 178, 565
BmeRI GACNNNNNGTC 2 cut(s) 563, 1233
BmgT120I GGNCC 2 cut(s) 178, 565
BmiI GGNNCC 4 cut(s) 209, 360, 567, 787
BmrFI CCNGG 6 cut(s) 364, 475, 563, 1113, 1150, 1329
BmsI GCATC 2 cut(s) 65, 637
BpiI GAAGAC 3 cut(s) 861, 1148, 1229
Bpu10I CCTNAGC 2 cut(s) 44, 146
Bpu14I TTCGAA 1 cut(s) 1312
BpuEI CTTGAG 1 cut(s) 758
BpuMI CCSGG 3 cut(s) 563, 1113, 1150
BsaHI GRCGYC 1 cut(s) 1153
BsaJI CCNNGG 7 cut(s) 5, 283, 353, 362, 561, 789, 876
BsaWI WCCGGW 1 cut(s) 982
Bsc4I CCNNNNNNNGG 4 cut(s) 615, 779, 982, 1148
Bse1I ACTGG 1 cut(s) 933
BseAI TCCGGA 1 cut(s) 982
BseBI CCWGG 3 cut(s) 364, 475, 1329
BseDI CCNNGG 7 cut(s) 5, 283, 353, 362, 561, 789, 876
BseGI GGATG 3 cut(s) 551, 1324, 1444
BseLI CCNNNNNNNGG 4 cut(s) 615, 779, 982, 1148
BseMII CTCAG 2 cut(s) 35, 735
BseNI ACTGG 1 cut(s) 933
BsePI GCGCGC 1 cut(s) 478
BseRI GAGGAG 2 cut(s) 747, 819
BseSI GKGCMC 3 cut(s) 141, 363, 491
BseXI GCAGC 5 cut(s) 388, 744, 1108, 1128, 1385
Bsh1236I CGCG 2 cut(s) 480, 482
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 1 cut(s) 635
BshNI GGYRCC 1 cut(s) 358
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 491
BsiSI CCGG 4 cut(s) 563, 983, 1112, 1149
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 4 cut(s) 615, 779, 982, 1148
BsmAI GTCTC 5 cut(s) 499, 549, 831, 1113, 1238
BsmFI GGGAC 1 cut(s) 551
BsnI GGCC 1 cut(s) 635
Bsp119I TTCGAA 1 cut(s) 1312
Bsp1286I GDGCHC 3 cut(s) 141, 363, 491
Bsp13I TCCGGA 1 cut(s) 982
Bsp143I GATC 6 cut(s) 202, 226, 385, 785, 964, 1090
Bsp19I CCATGG 2 cut(s) 353, 789
BspANI GGCC 1 cut(s) 635
BspCNI CTCAG 2 cut(s) 36, 736
BspEI TCCGGA 1 cut(s) 982
BspFNI CGCG 2 cut(s) 480, 482
BspLI GGNNCC 4 cut(s) 209, 360, 567, 787
BspMAI CTGCAG 2 cut(s) 406, 1252
BspMI ACCTGC 1 cut(s) 1241
BspPI GGATC 5 cut(s) 380, 780, 793, 972, 1085
BspT104I TTCGAA 1 cut(s) 1312
BspT107I GGYRCC 1 cut(s) 358
BsrI ACTGG 1 cut(s) 933
BssECI CCNNGG 7 cut(s) 5, 283, 353, 362, 561, 789, 876
BssHII GCGCGC 1 cut(s) 478
BssMI GATC 6 cut(s) 202, 226, 385, 785, 964, 1090
BssNI GRCGYC 1 cut(s) 1153
BssT1I CCWWGG 3 cut(s) 353, 789, 876
Bst2UI CCWGG 3 cut(s) 364, 475, 1329
Bst4CI ACNGT 2 cut(s) 610, 1408
Bst6I CTCTTC 2 cut(s) 9, 534
BstACI GRCGYC 1 cut(s) 1153
BstBI TTCGAA 1 cut(s) 1312
BstC8I GCNNGC 2 cut(s) 270, 480
BstDEI CTNAG 3 cut(s) 44, 146, 744
BstDSI CCRYGG 2 cut(s) 353, 789
BstF5I GGATG 3 cut(s) 551, 1324, 1444
BstFNI CGCG 2 cut(s) 480, 482
BstH2I RGCGCY 3 cut(s) 44, 998, 1122
BstHHI GCGC 5 cut(s) 43, 480, 482, 997, 1121
BstKTI GATC 6 cut(s) 205, 229, 388, 788, 967, 1093
BstMAI GTCTC 5 cut(s) 499, 549, 831, 1113, 1238
BstMBI GATC 6 cut(s) 202, 226, 385, 785, 964, 1090
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 7 cut(s) 38, 75, 78, 358, 486, 994, 1003
BstNI CCWGG 3 cut(s) 364, 475, 1329
BstSCI CCNGG 6 cut(s) 362, 473, 561, 1111, 1148, 1327
BstSFI CTRYAG 2 cut(s) 402, 1248
BstSLI GKGCMC 3 cut(s) 141, 363, 491
BstUI CGCG 2 cut(s) 480, 482
BstV1I GCAGC 5 cut(s) 388, 744, 1108, 1128, 1385
BstV2I GAAGAC 3 cut(s) 861, 1148, 1229
BstX2I RGATCY 2 cut(s) 785, 964
BstYI RGATCY 2 cut(s) 785, 964
BsuI GTATCC 1 cut(s) 612
BsuRI GGCC 1 cut(s) 635
BtgI CCRYGG 2 cut(s) 353, 789
BtsCI GGATG 3 cut(s) 551, 1324, 1444
BtsIMutI CAGTG 2 cut(s) 940, 1404
BveI ACCTGC 1 cut(s) 1241
Cac8I GCNNGC 2 cut(s) 270, 480
CfoI GCGC 5 cut(s) 43, 480, 482, 997, 1121
Cfr13I GGNCC 2 cut(s) 178, 565
CseI GACGC 2 cut(s) 203, 1142
Csp6I GTAC 1 cut(s) 606
CviQI GTAC 1 cut(s) 606
DdeI CTNAG 3 cut(s) 44, 146, 744
DpnI GATC 6 cut(s) 204, 228, 387, 787, 966, 1092
DpnII GATC 6 cut(s) 202, 226, 385, 785, 964, 1090
DraI TTTAAA 2 cut(s) 277, 1344
DriI GACNNNNNGTC 2 cut(s) 563, 1233
Eam1104I CTCTTC 2 cut(s) 9, 534
Eam1105I GACNNNNNGTC 2 cut(s) 563, 1233
EarI CTCTTC 2 cut(s) 9, 534
EciI GGCGGA 4 cut(s) 97, 99, 223, 750
Eco130I CCWWGG 3 cut(s) 353, 789, 876
Eco32I GATATC 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 178, 565
Eco47III AGCGCT 2 cut(s) 42, 1120
Eco57I CTGAAG 1 cut(s) 741
EcoRII CCWGG 3 cut(s) 362, 473, 1327
EcoRV GATATC 1 cut(s) 54
EcoT14I CCWWGG 3 cut(s) 353, 789, 876
ErhI CCWWGG 3 cut(s) 353, 789, 876
FalI AAGNNNNNCTT 2 cut(s) 685, 717
FaqI GGGAC 1 cut(s) 551
Fnu4HI GCNGC 8 cut(s) 70, 79, 82, 402, 733, 1117, 1122, 1374
FokI GGATG 3 cut(s) 538, 1311, 1451
Fsp4HI GCNGC 8 cut(s) 70, 79, 82, 402, 733, 1117, 1122, 1374
FspBI CTAG 2 cut(s) 573, 1160
GlaI GCGC 5 cut(s) 42, 479, 481, 996, 1120
GluI GCNGC 8 cut(s) 70, 79, 82, 402, 733, 1117, 1122, 1374
HaeII RGCGCY 3 cut(s) 44, 998, 1122
HaeIII GGCC 1 cut(s) 635
HapII CCGG 4 cut(s) 563, 983, 1112, 1149
HgaI GACGC 2 cut(s) 203, 1142
HhaI GCGC 5 cut(s) 43, 480, 482, 997, 1121
Hin1I GRCGYC 1 cut(s) 1153
Hin6I GCGC 5 cut(s) 41, 478, 480, 995, 1119
HinP1I GCGC 5 cut(s) 41, 478, 480, 995, 1119
HincII GTYRAC 1 cut(s) 687
HindII GTYRAC 1 cut(s) 687
HindIII AAGCTT 2 cut(s) 143, 954
HinfI GANTC 9 cut(s) 308, 433, 443, 707, 808, 866, 921, 938, 1040
HpaII CCGG 4 cut(s) 563, 983, 1112, 1149
HphI GGTGA 4 cut(s) 236, 1038, 1208, 1343
Hpy166II GTNNAC 4 cut(s) 437, 489, 687, 903
Hpy188I TCNGA 8 cut(s) 226, 331, 372, 385, 644, 706, 774, 865
Hpy8I GTNNAC 4 cut(s) 437, 489, 687, 903
Hpy99I CGWCG 3 cut(s) 194, 197, 614
HpyAV CCTTC 7 cut(s) 118, 128, 367, 468, 579, 711, 719
HpyCH4III ACNGT 2 cut(s) 610, 1408
HpyCH4V TGCA 6 cut(s) 268, 404, 489, 650, 1059, 1250
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 75, 78, 358, 486, 994, 1003
HpyF3I CTNAG 3 cut(s) 44, 146, 744
Hsp92I GRCGYC 1 cut(s) 1153
HspAI GCGC 5 cut(s) 41, 478, 480, 995, 1119
Kpn2I TCCGGA 1 cut(s) 982
Kzo9I GATC 6 cut(s) 202, 226, 385, 785, 964, 1090
LmnI GCTCC 3 cut(s) 213, 985, 1351
Lsp1109I GCAGC 5 cut(s) 388, 744, 1108, 1128, 1385
LweI GCATC 2 cut(s) 65, 637
MaeI CTAG 2 cut(s) 573, 1160
MaeIII GTNAC 1 cut(s) 1408
MalI GATC 6 cut(s) 204, 228, 387, 787, 966, 1092
MboI GATC 6 cut(s) 202, 226, 385, 785, 964, 1090
MboII GAAGA 9 cut(s) 26, 133, 167, 182, 521, 734, 861, 1148, 1229
MfeI CAATTG 1 cut(s) 1136
MflI RGATCY 2 cut(s) 785, 964
MhlI GDGCHC 3 cut(s) 141, 363, 491
MlyI GAGTC 4 cut(s) 437, 442, 802, 875
MmeI TCCRAC 2 cut(s) 413, 898
MroI TCCGGA 1 cut(s) 982
MroXI GAANNNNTTC 1 cut(s) 598
MseI TTAA 6 cut(s) 276, 449, 516, 1173, 1343, 1398
MslI CAYNNNNRTG 4 cut(s) 277, 794, 1051, 1329
MspI CCGG 4 cut(s) 563, 983, 1112, 1149
MspR9I CCNGG 6 cut(s) 364, 475, 563, 1113, 1150, 1329
MunI CAATTG 1 cut(s) 1136
MvaI CCWGG 3 cut(s) 364, 475, 1329
MvnI CGCG 2 cut(s) 480, 482
MwoI GCNNNNNNNGC 7 cut(s) 38, 75, 78, 358, 486, 994, 1003
NciI CCSGG 3 cut(s) 563, 1113, 1150
NcoI CCATGG 2 cut(s) 353, 789
NdeII GATC 6 cut(s) 202, 226, 385, 785, 964, 1090
NlaIV GGNNCC 4 cut(s) 209, 360, 567, 787
NmeAIII GCCGAG 2 cut(s) 30, 308
NspV TTCGAA 1 cut(s) 1312
PaqCI CACCTGC 1 cut(s) 1241
PauI GCGCGC 1 cut(s) 478
PcsI WCGNNNNNNNCGW 3 cut(s) 198, 222, 312
PdmI GAANNNNTTC 1 cut(s) 598
PfeI GAWTC 5 cut(s) 308, 707, 921, 938, 1040
PkrI GCNGC 8 cut(s) 71, 80, 83, 403, 734, 1118, 1123, 1375
Ple19I CGATCG 1 cut(s) 205
PleI GAGTC 4 cut(s) 437, 441, 802, 874
PpsI GAGTC 4 cut(s) 437, 441, 802, 874
PshBI ATTAAT 1 cut(s) 1173
Psp6I CCWGG 3 cut(s) 362, 473, 1327
PspGI CCWGG 3 cut(s) 362, 473, 1327
PspN4I GGNNCC 4 cut(s) 209, 360, 567, 787
PspPI GGNCC 2 cut(s) 178, 565
PstI CTGCAG 2 cut(s) 406, 1252
PsuI RGATCY 2 cut(s) 785, 964
PteI GCGCGC 1 cut(s) 478
PvuI CGATCG 1 cut(s) 205
RsaI GTAC 1 cut(s) 607
RsaNI GTAC 1 cut(s) 606
RseI CAYNNNNRTG 4 cut(s) 277, 794, 1051, 1329
SaqAI TTAA 6 cut(s) 276, 449, 516, 1173, 1343, 1398
SatI GCNGC 8 cut(s) 70, 79, 82, 402, 733, 1117, 1122, 1374
Sau3AI GATC 6 cut(s) 202, 226, 385, 785, 964, 1090
Sau96I GGNCC 2 cut(s) 178, 565
SchI GAGTC 4 cut(s) 437, 442, 802, 875
ScrFI CCNGG 6 cut(s) 364, 475, 563, 1113, 1150, 1329
SduI GDGCHC 3 cut(s) 141, 363, 491
SfaNI GCATC 2 cut(s) 65, 637
SfcI CTRYAG 2 cut(s) 402, 1248
SfuI TTCGAA 1 cut(s) 1312
SinI GGWCC 2 cut(s) 178, 565
SmiI ATTTAAAT 1 cut(s) 277
SmiMI CAYNNNNRTG 4 cut(s) 277, 794, 1051, 1329
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
SspMI CTAG 2 cut(s) 573, 1160
StyD4I CCNGG 6 cut(s) 362, 473, 561, 1111, 1148, 1327
StyI CCWWGG 3 cut(s) 353, 789, 876
SwaI ATTTAAAT 1 cut(s) 277
TaaI ACNGT 2 cut(s) 610, 1408
TaqI TCGA 9 cut(s) 56, 153, 201, 306, 414, 612, 1312, 1393, 1449
TaqII GACCGA 1 cut(s) 1446
TauI GCSGC 3 cut(s) 72, 81, 84
TfiI GAWTC 5 cut(s) 308, 707, 921, 938, 1040
Tru1I TTAA 6 cut(s) 276, 449, 516, 1173, 1343, 1398
Tru9I TTAA 6 cut(s) 276, 449, 516, 1173, 1343, 1398
TscAI CASTG 2 cut(s) 940, 1411
TseI GCWGC 5 cut(s) 401, 732, 1116, 1121, 1373
TspDTI ATGAA 5 cut(s) 270, 423, 591, 884, 1116
TspGWI ACGGA 2 cut(s) 407, 965
TspRI CASTG 2 cut(s) 940, 1411
VneI GTGCAC 1 cut(s) 487
VpaK11BI GGWCC 2 cut(s) 178, 565
VspI ATTAAT 1 cut(s) 1173
XapI RAATTY 2 cut(s) 101, 319
XbaI TCTAGA 1 cut(s) 1159
XmnI GAANNNNTTC 1 cut(s) 598
XspI CTAG 2 cut(s) 573, 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.