RLG00000019877

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006744
Physical Location & Seq
Reverse (-)
57880512 .. 57882310
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019877

Sequence Viewer

Length: 1344 bp
ATGAGGAACGAAGAGAAATCGAGGCCGGTGAGGAAGGCGTTGAGGGACGTGTCGAATAGCCACGGCGGCGGAAGATCCTCGATATTCTCAACCACGGCAAAGAAGAAAGACAAGGAGTTGCAGAGGCCGAGGGTCGAACAAGAAGAACGCAGAGAAGAGGACCAAAACGATGTCATTTTGGATCGCCTCTTGCTCGTTCAGTCCGATCTATCAGCCCTAATTAATCAGATTGATCAGCTAGTTGTGGAAGCGTTTAAATGTAAAGCAGGAGCAAGCAAAGAAGTTGAATCCTTCACACATTTCTTATCCGAAATGCATTCGTCTTTGAAGCCATGGGTGCCTAGATTTCAGAAAGCACTCTCTGCTCCTGCGGAAACGGTGGTTGTGTGTGAAGTCGAAAGTGGTGAGATTAAGAGTCCTGAAGTTGAGGGGAAAGAGATTGAGAGCCTGGAAGAGTCTGATTCAGAGTCGTTGATCTCGCCTTCTCCCCTTGTTTCGTGGCGTGCTGACTGCACTATCCAGAGAGGAAGACAGTTGTTTATGCTTACGCCACTGCCCATATCAAAGTCTCTGTCATCCAAACCCCCAATGCCTTCCAAACCTATGGTGTTTGAGAGGGTTACATCTAATACTACAGATAGGCGACCGTTCTTTGGTACAAATGATGATTTGCCTGAATTTGTAGCAATAGAGCCGATTCCCTATAAGCCTTCTGATTCAGTTACTACTGATACAGGAGGAGTTGTTGAGTCTGGCTTTGTTTCTACACCAGTGTCGAAAATTGGGGGCTCCATGGTTCTGAATTTGATGACTCCATGCTTAAAGTCTCCTCCTAAATCTTGTGTCCTGCTTGAACCCATTTCGGAAAAGGGACATCACCGGGTTTGTAATCGTAAATCTACCCCATATCCTGCTGGAATCAGATATTCTGGTGATTCCTCTAGCAGTGAAACTTCTGACGACATGGATGCCTCACCAGATTGGTGTATGTCACCACCTAAAACTTGTGTTTTACTGGAGCCACGTGATGAAAAGTCTGCAGATGAAGTAGGTCATCTTCAAGATACACAACTGAATGGGCCTCTTTTAAAAGATAATGAGGGTGTAGGAGGCATTCAACAAATCAAGACAGAGCCTGTAGGTGGTGGCAGATGTGCCATAGAAAGCACACCAATCTGGAAACAAGCTGGAAGCGTAGTAGTTCACAAAGGCAAACATCCTGGTGAGAATACTTTAAAGAGGGAGTTGTGGATTAAGTTTGAAGCAGCTTCTACAAATGAGCTCAGTATTGATGACTCTGTAACTCAAAAAAGACTTCTTGACCTATTGGATGAGGCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

448

Amino Acids

49.21

Weight (kDa)

5.37

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 337
AciI CCGC 3 cut(s) 66, 69, 371
AclWI GGATC 2 cut(s) 69, 189
AcsI RAATTY 2 cut(s) 677, 802
AcuI CTGAAG 1 cut(s) 441
AcvI CACGTG 1 cut(s) 1025
AfaI GTAC 1 cut(s) 658
AfiI CCNNNNNNNGG 2 cut(s) 653, 1142
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 6 cut(s) 287, 328, 854, 1061, 1118, 1262
AjiI CACGTC 1 cut(s) 49
AjnI CCWGG 2 cut(s) 447, 1219
AluBI AGCT 4 cut(s) 238, 1187, 1268, 1282
AluI AGCT 4 cut(s) 238, 1187, 1268, 1282
Alw21I GWGCWC 1 cut(s) 1284
Alw26I GTCTC 2 cut(s) 573, 831
AlwI GGATC 2 cut(s) 69, 189
AlwNI CAGNNNCTG 1 cut(s) 1136
AoxI GGCC 3 cut(s) 23, 125, 1079
ApeKI GCWGC 1 cut(s) 1265
ApoI RAATTY 2 cut(s) 677, 802
ArsI GACNNNNNNTTYG 2 cut(s) 557, 589
AseI ATTAAT 1 cut(s) 222
AspS9I GGNCC 2 cut(s) 160, 1079
AsuC2I CCSGG 1 cut(s) 881
AsuHPI GGTGA 7 cut(s) 40, 416, 869, 944, 966, 984, 1235
AvaII GGWCC 1 cut(s) 160
BanI GGYRCC 1 cut(s) 337
BanII GRGCYC 2 cut(s) 791, 1284
BarI GAAGNNNNNNTAC 2 cut(s) 1041, 1073
BbrPI CACGTG 1 cut(s) 1025
BbsI GAAGAC 1 cut(s) 535
Bbv12I GWGCWC 1 cut(s) 1284
BbvI GCAGC 1 cut(s) 1277
BceAI ACGGC 2 cut(s) 79, 111
BcgI CGANNNNNNTGC 2 cut(s) 950, 984
BciT130I CCWGG 2 cut(s) 449, 1221
BclI TGATCA 1 cut(s) 232
BcnI CCSGG 1 cut(s) 881
BcoDI GTCTC 2 cut(s) 573, 831
BfaI CTAG 3 cut(s) 239, 342, 942
BfmI CTRYAG 3 cut(s) 633, 1038, 1137
BglI GCCNNNNNGGC 1 cut(s) 66
BisI GCNGC 2 cut(s) 67, 1266
BlsI GCNGC 2 cut(s) 68, 1267
Bme1390I CCNGG 3 cut(s) 449, 881, 1221
Bme18I GGWCC 1 cut(s) 160
BmgBI CACGTC 1 cut(s) 49
BmgT120I GGNCC 2 cut(s) 160, 1079
BmiI GGNNCC 3 cut(s) 339, 790, 1020
BmrFI CCNGG 3 cut(s) 449, 881, 1221
BmsI GCATC 1 cut(s) 958
BpiI GAAGAC 1 cut(s) 535
BpmI CTGGAG 1 cut(s) 1037
BpuMI CCSGG 1 cut(s) 881
BsaAI YACGTR 1 cut(s) 1025
BsaJI CCNNGG 5 cut(s) 61, 93, 128, 332, 792
BsaXI ACNNNNNCTCC 2 cut(s) 729, 759
Bsc4I CCNNNNNNNGG 2 cut(s) 653, 1142
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 2 cut(s) 770, 1020
BseBI CCWGG 2 cut(s) 449, 1221
BseDI CCNNGG 5 cut(s) 61, 93, 128, 332, 792
BseGI GGATG 4 cut(s) 575, 973, 1216, 1336
BseLI CCNNNNNNNGG 2 cut(s) 653, 1142
BseMII CTCAG 1 cut(s) 1297
BseNI ACTGG 2 cut(s) 770, 1020
BseRI GAGGAG 2 cut(s) 753, 819
BseXI GCAGC 1 cut(s) 1277
BsgI GTGCAG 1 cut(s) 496
Bsh1285I CGRYCG 1 cut(s) 647
BshFI GGCC 3 cut(s) 25, 127, 1081
BshNI GGYRCC 1 cut(s) 337
BsiEI CGRYCG 1 cut(s) 647
BsiHKAI GWGCWC 1 cut(s) 1284
BsiSI CCGG 2 cut(s) 26, 880
BslFI GGGAC 2 cut(s) 59, 885
BslI CCNNNNNNNGG 2 cut(s) 653, 1142
BsmAI GTCTC 2 cut(s) 573, 831
BsmFI GGGAC 2 cut(s) 59, 885
BsmI GAATGC 2 cut(s) 316, 1113
BsnI GGCC 3 cut(s) 25, 127, 1081
Bsp1286I GDGCHC 2 cut(s) 791, 1284
Bsp143I GATC 5 cut(s) 74, 181, 205, 232, 474
Bsp19I CCATGG 2 cut(s) 332, 792
BspACI CCGC 3 cut(s) 66, 69, 371
BspANI GGCC 3 cut(s) 25, 127, 1081
BspCNI CTCAG 1 cut(s) 1296
BspHI TCATGA 1 cut(s) 1340
BspLI GGNNCC 3 cut(s) 339, 790, 1020
BspMAI CTGCAG 1 cut(s) 1042
BspPI GGATC 2 cut(s) 69, 189
BspT107I GGYRCC 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 2 cut(s) 770, 1020
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 5 cut(s) 61, 93, 128, 332, 792
BssMI GATC 5 cut(s) 74, 181, 205, 232, 474
BssT1I CCWWGG 2 cut(s) 332, 792
Bst2UI CCWGG 2 cut(s) 449, 1221
Bst4CI ACNGT 3 cut(s) 379, 534, 648
Bst6I CTCTTC 3 cut(s) 6, 150, 447
BstAPI GCANNNNNTGC 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 1025
BstC8I GCNNGC 2 cut(s) 274, 504
BstDEI CTNAG 1 cut(s) 1283
BstDSI CCRYGG 4 cut(s) 61, 93, 332, 792
BstF5I GGATG 4 cut(s) 575, 973, 1216, 1336
BstKTI GATC 5 cut(s) 77, 184, 208, 235, 477
BstMAI GTCTC 2 cut(s) 573, 831
BstMBI GATC 5 cut(s) 74, 181, 205, 232, 474
BstMCI CGRYCG 1 cut(s) 647
BstMWI GCNNNNNNNGC 3 cut(s) 66, 337, 362
BstNI CCWGG 2 cut(s) 449, 1221
BstSCI CCNGG 3 cut(s) 447, 879, 1219
BstSFI CTRYAG 3 cut(s) 633, 1038, 1137
BstV1I GCAGC 1 cut(s) 1277
BstV2I GAAGAC 1 cut(s) 535
BstX2I RGATCY 1 cut(s) 74
BstXI CCANNNNNNTGG 1 cut(s) 604
BstYI RGATCY 1 cut(s) 74
BsuRI GGCC 3 cut(s) 25, 127, 1081
BtgI CCRYGG 4 cut(s) 61, 93, 332, 792
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 4 cut(s) 575, 973, 1216, 1336
BtsI GCAGTG 2 cut(s) 551, 952
BtsIMutI CAGTG 3 cut(s) 551, 777, 952
Cac8I GCNNGC 2 cut(s) 274, 504
CaiI CAGNNNCTG 1 cut(s) 1136
CciI TCATGA 1 cut(s) 1340
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 160, 1079
Csp6I GTAC 1 cut(s) 657
CviAII CATG 5 cut(s) 333, 793, 816, 964, 1341
CviQI GTAC 1 cut(s) 657
DdeI CTNAG 1 cut(s) 1283
DpnI GATC 5 cut(s) 76, 183, 207, 234, 476
DpnII GATC 5 cut(s) 74, 181, 205, 232, 474
DraI TTTAAA 3 cut(s) 256, 1089, 1236
Eam1104I CTCTTC 3 cut(s) 6, 150, 447
EarI CTCTTC 3 cut(s) 6, 150, 447
EciI GGCGGA 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 1282
Eco130I CCWWGG 2 cut(s) 332, 792
Eco24I GRGCYC 2 cut(s) 791, 1284
Eco47I GGWCC 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 1282
Eco57I CTGAAG 1 cut(s) 441
Eco72I CACGTG 1 cut(s) 1025
EcoICRI GAGCTC 1 cut(s) 1282
EcoRII CCWGG 2 cut(s) 447, 1219
EcoT14I CCWWGG 2 cut(s) 332, 792
EcoT22I ATGCAT 1 cut(s) 318
EcoT38I GRGCYC 2 cut(s) 791, 1284
ErhI CCWWGG 2 cut(s) 332, 792
FaeI CATG 5 cut(s) 336, 796, 819, 967, 1344
FaqI GGGAC 2 cut(s) 59, 885
FatI CATG 5 cut(s) 332, 792, 815, 963, 1340
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 2 cut(s) 67, 1266
FokI GGATG 3 cut(s) 562, 980, 1203
FriOI GRGCYC 2 cut(s) 791, 1284
Fsp4HI GCNGC 2 cut(s) 67, 1266
FspBI CTAG 3 cut(s) 239, 342, 942
GluI GCNGC 2 cut(s) 67, 1266
GsuI CTGGAG 1 cut(s) 1037
HaeIII GGCC 3 cut(s) 25, 127, 1081
HapII CCGG 2 cut(s) 26, 880
Hin1II CATG 5 cut(s) 336, 796, 819, 967, 1344
HpaII CCGG 2 cut(s) 26, 880
HphI GGTGA 7 cut(s) 40, 416, 869, 944, 966, 984, 1235
Hpy166II GTNNAC 1 cut(s) 1204
Hpy188III TCNNGA 7 cut(s) 419, 520, 1061, 1126, 1177, 1319, 1341
Hpy8I GTNNAC 1 cut(s) 1204
HpyAV CCTTC 5 cut(s) 28, 301, 492, 603, 720
HpyCH4III ACNGT 3 cut(s) 379, 534, 648
HpyCH4IV ACGT 2 cut(s) 48, 1024
HpyCH4V TGCA 4 cut(s) 121, 316, 513, 1040
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 337, 362
HpyF3I CTNAG 1 cut(s) 1283
HpySE526I ACGT 2 cut(s) 48, 1024
Hsp92II CATG 5 cut(s) 336, 796, 819, 967, 1344
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 5 cut(s) 74, 181, 205, 232, 474
LmnI GCTCC 4 cut(s) 269, 370, 794, 1018
Lsp1109I GCAGC 1 cut(s) 1277
LweI GCATC 1 cut(s) 958
MaeI CTAG 3 cut(s) 239, 342, 942
MaeII ACGT 2 cut(s) 48, 1024
MaeIII GTNAC 4 cut(s) 619, 721, 990, 1300
MalI GATC 5 cut(s) 76, 183, 207, 234, 476
MboI GATC 5 cut(s) 74, 181, 205, 232, 474
MboII GAAGA 8 cut(s) 23, 84, 115, 155, 167, 464, 540, 1049
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 2 cut(s) 791, 1284
MluCI AATT 4 cut(s) 219, 677, 780, 802
MlyI GAGTC 6 cut(s) 424, 464, 476, 758, 805, 1289
Mph1103I ATGCAT 1 cut(s) 318
MseI TTAA 7 cut(s) 222, 255, 411, 821, 1088, 1235, 1254
MslI CAYNNNNRTG 1 cut(s) 1221
MspI CCGG 2 cut(s) 26, 880
MspR9I CCNGG 3 cut(s) 449, 881, 1221
Mva1269I GAATGC 2 cut(s) 316, 1113
MvaI CCWGG 2 cut(s) 449, 1221
MwoI GCNNNNNNNGC 3 cut(s) 66, 337, 362
NciI CCSGG 1 cut(s) 881
NcoI CCATGG 2 cut(s) 332, 792
NdeII GATC 5 cut(s) 74, 181, 205, 232, 474
NlaIII CATG 5 cut(s) 336, 796, 819, 967, 1344
NlaIV GGNNCC 3 cut(s) 339, 790, 1020
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 990
NsiI ATGCAT 1 cut(s) 318
PagI TCATGA 1 cut(s) 1340
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PctI GAATGC 2 cut(s) 316, 1113
PfeI GAWTC 6 cut(s) 287, 461, 697, 716, 918, 935
PkrI GCNGC 2 cut(s) 68, 1267
PleI GAGTC 6 cut(s) 423, 463, 475, 757, 805, 1289
PmaCI CACGTG 1 cut(s) 1025
PmlI CACGTG 1 cut(s) 1025
PpsI GAGTC 6 cut(s) 423, 463, 475, 757, 805, 1289
Ppu21I YACGTR 1 cut(s) 1025
PshBI ATTAAT 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 1284
Psp6I CCWGG 2 cut(s) 447, 1219
PspCI CACGTG 1 cut(s) 1025
PspGI CCWGG 2 cut(s) 447, 1219
PspN4I GGNNCC 3 cut(s) 339, 790, 1020
PspPI GGNCC 2 cut(s) 160, 1079
PstI CTGCAG 1 cut(s) 1042
PstNI CAGNNNCTG 1 cut(s) 1136
PsuI RGATCY 1 cut(s) 74
RsaI GTAC 1 cut(s) 658
RsaNI GTAC 1 cut(s) 657
RseI CAYNNNNRTG 1 cut(s) 1221
SacI GAGCTC 1 cut(s) 1284
SaqAI TTAA 7 cut(s) 222, 255, 411, 821, 1088, 1235, 1254
SatI GCNGC 2 cut(s) 67, 1266
Sau3AI GATC 5 cut(s) 74, 181, 205, 232, 474
Sau96I GGNCC 2 cut(s) 160, 1079
SchI GAGTC 6 cut(s) 424, 464, 476, 758, 805, 1289
ScrFI CCNGG 3 cut(s) 449, 881, 1221
SduI GDGCHC 2 cut(s) 791, 1284
SfaNI GCATC 1 cut(s) 958
SfcI CTRYAG 3 cut(s) 633, 1038, 1137
SinI GGWCC 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 1221
Sse9I AATT 4 cut(s) 219, 677, 780, 802
SsiI CCGC 3 cut(s) 66, 69, 371
SspMI CTAG 3 cut(s) 239, 342, 942
SstI GAGCTC 1 cut(s) 1284
StyD4I CCNGG 3 cut(s) 447, 879, 1219
StyI CCWWGG 2 cut(s) 332, 792
TaaI ACNGT 3 cut(s) 379, 534, 648
TaiI ACGT 2 cut(s) 51, 1027
TaqI TCGA 6 cut(s) 20, 53, 80, 135, 396, 776
TasI AATT 4 cut(s) 219, 677, 780, 802
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 6 cut(s) 287, 461, 697, 716, 918, 935
Tru1I TTAA 7 cut(s) 222, 255, 411, 821, 1088, 1235, 1254
Tru9I TTAA 7 cut(s) 222, 255, 411, 821, 1088, 1235, 1254
TscAI CASTG 3 cut(s) 558, 777, 952
TseFI GTSAC 1 cut(s) 990
TseI GCWGC 1 cut(s) 1265
Tsp45I GTSAC 1 cut(s) 990
TspDTI ATGAA 3 cut(s) 1044, 1059, 1329
TspRI CASTG 3 cut(s) 558, 777, 952
VpaK11BI GGWCC 1 cut(s) 160
VspI ATTAAT 1 cut(s) 222
XapI RAATTY 2 cut(s) 677, 802
XspI CTAG 3 cut(s) 239, 342, 942
Zsp2I ATGCAT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.