Rw2G033950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0006744
Physical Location & Seq
Reverse (-)
55686645 .. 55688821
2177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G033950.1

Sequence Viewer

Length: 1359 bp
ATGAGGAATGAAGAGAAATCGAGGCCGGTGAGGAAGGCGTTGAGGGACGTGTCGAATAGCCACGGCGGCGGAAGATCCTCGATATTCTCAACCACGGCGAAGAAGAAAGACAAGGAATTGCAGAGGCCGAGGGTCGAACAAGAAGAACGCAAAGAAGAGGACCAAAACGATGTCGTTTTGGATCGCCTCTTGCTTGTTCAGTCCGATCTATCAGCCCTAATTAATCAGATTGATCAGCTAGTTGTGGAAGCGTTTAAATGTAAAGCAGGAGCAAGCAAAGAAGTTGAATCCTTCACACATTTCTTATCCGAAATGCATTCGTCGTTGAAGCCATGGGTGCCCAGATTTCAGAAGGCACTTTGTGCTCCTGCAGAAACGGTAGTTGTGAGTGAAGTTGAGAGTGGTGAGATTAAGAGTCCTGAAGTTGAGGGGAAAGGGATTGAGAGCCTGGAAGAGTCTGATTCAGAGTCGTTGATCTCGCCTTCTCCCCTTGTTTCGTGGCGTGCTGACTGCACTATCCAGAGAGGAAGACAGTTGTTTATGCTTACGCCTCTTCCCATATCAAAGTCTCTGTCATCCAAACCCCCAATGCCTTCCAAACCTATGGTGTTTGAGAGGGTTACATCTAATACTACAGATAGGCGACAGTTTTTTGGTACTACTAGTGGTGATGCAAATGATGATTTGCCTGAATTTGTAGCGATAGAGCCGATTCCCTCTAAGCCTTCTGATTCAGTTACTACTGAGACAGGAGGAGTTGTTGAGTCTGGCTTTGTTTCTACACCAGTGTCGAAAATTGGGGGCTCCATGGTTCTGAATTTGATGACTCCATGCTTAAAGTCTCCTCCTAAATCTTGTGTCCTGCTTGAACCCATTTCGGAAAAGGGACATCACCGGGTTTGTAATCGTAAATCTACCCCATATCCTGCTGGAATCAGATATTCTGGTGATTCCTCTAGCAGTGAAACTTCTGACGACATGGATGCCTCACCAGATTGGTGTATGTCACCACCTAAAACTTGTGTTTTACTGGAGCCACGTGATGAAAAGTCTTCAGATGAAGTAGGTCATCTTCAAGATACACAACTGAATGGGCCTCTTTTAAAAGATAATGAGGGTGTAGGAGGCATTCAACAAATCAAGACAGAGCCTGTAGGTGGTGGCAGATGTGCCATAGAAAGCACACCAATCTGGAAACAAGCTGGAAGCGTAGTAGTTCACAAAGGCAAACATCCTGGTGAGAATACTTTAAAGAGGGAGTTGTGGATTAAGTTTGAAGCAGCTTCTACAAATGAGCTCAGTATTGATGACTCTGTAACTCAAAAAAGACTTCTTGACCTATTGGATGAGGCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

452

Amino Acids

49.51

Weight (kDa)

5.37

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 337
AciI CCGC 2 cut(s) 66, 69
AclWI GGATC 2 cut(s) 69, 189
AcsI RAATTY 2 cut(s) 692, 817
AcuI CTGAAG 2 cut(s) 441, 1038
AcvI CACGTG 1 cut(s) 1040
AdeI CACNNNGTG 1 cut(s) 362
AfaI GTAC 1 cut(s) 658
AfiI CCNNNNNNNGG 1 cut(s) 1157
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 6 cut(s) 287, 328, 869, 1076, 1133, 1277
AhlI ACTAGT 1 cut(s) 662
AjiI CACGTC 1 cut(s) 49
AjnI CCWGG 2 cut(s) 447, 1234
AluBI AGCT 4 cut(s) 238, 1202, 1283, 1297
AluI AGCT 4 cut(s) 238, 1202, 1283, 1297
Alw21I GWGCWC 2 cut(s) 367, 1299
Alw26I GTCTC 3 cut(s) 573, 740, 846
AlwI GGATC 2 cut(s) 69, 189
AlwNI CAGNNNCTG 1 cut(s) 1151
AoxI GGCC 3 cut(s) 23, 125, 1094
ApeKI GCWGC 1 cut(s) 1280
ApoI RAATTY 2 cut(s) 692, 817
ArsI GACNNNNNNTTYG 2 cut(s) 557, 589
AseI ATTAAT 1 cut(s) 222
AspS9I GGNCC 2 cut(s) 160, 1094
AsuC2I CCSGG 1 cut(s) 896
AsuHPI GGTGA 8 cut(s) 40, 416, 680, 884, 959, 981, 999, 1250
AvaII GGWCC 1 cut(s) 160
BaeGI GKGCMC 1 cut(s) 342
BanI GGYRCC 1 cut(s) 337
BanII GRGCYC 2 cut(s) 806, 1299
BarI GAAGNNNNNNTAC 2 cut(s) 1056, 1088
BbrPI CACGTG 1 cut(s) 1040
BbsI GAAGAC 2 cut(s) 535, 1044
Bbv12I GWGCWC 2 cut(s) 367, 1299
BbvI GCAGC 1 cut(s) 1292
BceAI ACGGC 2 cut(s) 79, 111
BcgI CGANNNNNNTGC 2 cut(s) 965, 999
BciT130I CCWGG 2 cut(s) 449, 1236
BclI TGATCA 1 cut(s) 232
BcnI CCSGG 1 cut(s) 896
BcoDI GTCTC 3 cut(s) 573, 740, 846
BcuI ACTAGT 1 cut(s) 662
BfaI CTAG 3 cut(s) 239, 663, 957
BfmI CTRYAG 3 cut(s) 369, 633, 1152
BglI GCCNNNNNGGC 1 cut(s) 66
BisI GCNGC 2 cut(s) 67, 1281
BlsI GCNGC 2 cut(s) 68, 1282
Bme1390I CCNGG 3 cut(s) 449, 896, 1236
Bme18I GGWCC 1 cut(s) 160
BmgBI CACGTC 1 cut(s) 49
BmgT120I GGNCC 2 cut(s) 160, 1094
BmiI GGNNCC 3 cut(s) 339, 805, 1035
BmrFI CCNGG 3 cut(s) 449, 896, 1236
BmsI GCATC 2 cut(s) 661, 973
BpiI GAAGAC 2 cut(s) 535, 1044
BpmI CTGGAG 1 cut(s) 1052
BpuMI CCSGG 1 cut(s) 896
BsaAI YACGTR 1 cut(s) 1040
BsaJI CCNNGG 5 cut(s) 61, 93, 128, 332, 807
BsaXI ACNNNNNCTCC 2 cut(s) 744, 774
Bsc4I CCNNNNNNNGG 1 cut(s) 1157
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 2 cut(s) 785, 1035
BseBI CCWGG 2 cut(s) 449, 1236
BseDI CCNNGG 5 cut(s) 61, 93, 128, 332, 807
BseGI GGATG 4 cut(s) 575, 988, 1231, 1351
BseLI CCNNNNNNNGG 1 cut(s) 1157
BseMII CTCAG 2 cut(s) 735, 1312
BseNI ACTGG 2 cut(s) 785, 1035
BseRI GAGGAG 2 cut(s) 768, 834
BseSI GKGCMC 1 cut(s) 342
BseXI GCAGC 1 cut(s) 1292
BsgI GTGCAG 1 cut(s) 496
BshFI GGCC 3 cut(s) 25, 127, 1096
BshNI GGYRCC 1 cut(s) 337
BsiHKAI GWGCWC 2 cut(s) 367, 1299
BsiSI CCGG 2 cut(s) 26, 895
BslFI GGGAC 2 cut(s) 59, 900
BslI CCNNNNNNNGG 1 cut(s) 1157
BsmAI GTCTC 3 cut(s) 573, 740, 846
BsmFI GGGAC 2 cut(s) 59, 900
BsmI GAATGC 2 cut(s) 316, 1128
BsnI GGCC 3 cut(s) 25, 127, 1096
Bsp1286I GDGCHC 4 cut(s) 342, 367, 806, 1299
Bsp143I GATC 5 cut(s) 74, 181, 205, 232, 474
Bsp19I CCATGG 2 cut(s) 332, 807
BspACI CCGC 2 cut(s) 66, 69
BspANI GGCC 3 cut(s) 25, 127, 1096
BspCNI CTCAG 2 cut(s) 736, 1311
BspHI TCATGA 1 cut(s) 1355
BspLI GGNNCC 3 cut(s) 339, 805, 1035
BspMAI CTGCAG 1 cut(s) 373
BspPI GGATC 2 cut(s) 69, 189
BspT107I GGYRCC 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 2 cut(s) 785, 1035
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 5 cut(s) 61, 93, 128, 332, 807
BssMI GATC 5 cut(s) 74, 181, 205, 232, 474
BssT1I CCWWGG 2 cut(s) 332, 807
Bst2UI CCWGG 2 cut(s) 449, 1236
Bst4CI ACNGT 3 cut(s) 379, 534, 648
Bst6I CTCTTC 4 cut(s) 6, 150, 447, 558
BstAPI GCANNNNNTGC 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 1040
BstC8I GCNNGC 2 cut(s) 274, 504
BstDEI CTNAG 3 cut(s) 720, 744, 1298
BstDSI CCRYGG 4 cut(s) 61, 93, 332, 807
BstF5I GGATG 4 cut(s) 575, 988, 1231, 1351
BstKTI GATC 5 cut(s) 77, 184, 208, 235, 477
BstMAI GTCTC 3 cut(s) 573, 740, 846
BstMBI GATC 5 cut(s) 74, 181, 205, 232, 474
BstMWI GCNNNNNNNGC 3 cut(s) 66, 337, 362
BstNI CCWGG 2 cut(s) 449, 1236
BstSCI CCNGG 3 cut(s) 447, 894, 1234
BstSFI CTRYAG 3 cut(s) 369, 633, 1152
BstSLI GKGCMC 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 1292
BstV2I GAAGAC 2 cut(s) 535, 1044
BstX2I RGATCY 1 cut(s) 74
BstXI CCANNNNNNTGG 1 cut(s) 604
BstYI RGATCY 1 cut(s) 74
BsuRI GGCC 3 cut(s) 25, 127, 1096
BtgI CCRYGG 4 cut(s) 61, 93, 332, 807
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 4 cut(s) 575, 988, 1231, 1351
BtsI GCAGTG 1 cut(s) 967
BtsIMutI CAGTG 2 cut(s) 792, 967
Cac8I GCNNGC 2 cut(s) 274, 504
CaiI CAGNNNCTG 1 cut(s) 1151
CciI TCATGA 1 cut(s) 1355
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 160, 1094
Csp6I GTAC 1 cut(s) 657
CviAII CATG 5 cut(s) 333, 808, 831, 979, 1356
CviQI GTAC 1 cut(s) 657
DdeI CTNAG 3 cut(s) 720, 744, 1298
DpnI GATC 5 cut(s) 76, 183, 207, 234, 476
DpnII GATC 5 cut(s) 74, 181, 205, 232, 474
DraI TTTAAA 3 cut(s) 256, 1104, 1251
DraIII CACNNNGTG 1 cut(s) 362
Eam1104I CTCTTC 4 cut(s) 6, 150, 447, 558
EarI CTCTTC 4 cut(s) 6, 150, 447, 558
EciI GGCGGA 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 1297
Eco130I CCWWGG 2 cut(s) 332, 807
Eco24I GRGCYC 2 cut(s) 806, 1299
Eco47I GGWCC 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 1297
Eco57I CTGAAG 2 cut(s) 441, 1038
Eco72I CACGTG 1 cut(s) 1040
EcoICRI GAGCTC 1 cut(s) 1297
EcoRII CCWGG 2 cut(s) 447, 1234
EcoT14I CCWWGG 2 cut(s) 332, 807
EcoT22I ATGCAT 1 cut(s) 318
EcoT38I GRGCYC 2 cut(s) 806, 1299
ErhI CCWWGG 2 cut(s) 332, 807
FaeI CATG 5 cut(s) 336, 811, 834, 982, 1359
FaqI GGGAC 2 cut(s) 59, 900
FatI CATG 5 cut(s) 332, 807, 830, 978, 1355
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 2 cut(s) 67, 1281
FokI GGATG 3 cut(s) 562, 995, 1218
FriOI GRGCYC 2 cut(s) 806, 1299
Fsp4HI GCNGC 2 cut(s) 67, 1281
FspBI CTAG 3 cut(s) 239, 663, 957
GluI GCNGC 2 cut(s) 67, 1281
GsuI CTGGAG 1 cut(s) 1052
HaeIII GGCC 3 cut(s) 25, 127, 1096
HapII CCGG 2 cut(s) 26, 895
Hin1II CATG 5 cut(s) 336, 811, 834, 982, 1359
HpaII CCGG 2 cut(s) 26, 895
HphI GGTGA 8 cut(s) 40, 416, 680, 884, 959, 981, 999, 1250
Hpy166II GTNNAC 1 cut(s) 1219
Hpy188III TCNNGA 7 cut(s) 419, 520, 1076, 1141, 1192, 1334, 1356
Hpy8I GTNNAC 1 cut(s) 1219
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 6 cut(s) 28, 301, 346, 492, 603, 735
HpyCH4III ACNGT 3 cut(s) 379, 534, 648
HpyCH4IV ACGT 2 cut(s) 48, 1039
HpyCH4V TGCA 5 cut(s) 121, 316, 371, 513, 674
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 337, 362
HpyF3I CTNAG 3 cut(s) 720, 744, 1298
HpySE526I ACGT 2 cut(s) 48, 1039
Hsp92II CATG 5 cut(s) 336, 811, 834, 982, 1359
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 5 cut(s) 74, 181, 205, 232, 474
LmnI GCTCC 4 cut(s) 269, 370, 809, 1033
Lsp1109I GCAGC 1 cut(s) 1292
LweI GCATC 2 cut(s) 661, 973
MaeI CTAG 3 cut(s) 239, 663, 957
MaeII ACGT 2 cut(s) 48, 1039
MaeIII GTNAC 4 cut(s) 619, 736, 1005, 1315
MalI GATC 5 cut(s) 76, 183, 207, 234, 476
MboI GATC 5 cut(s) 74, 181, 205, 232, 474
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 4 cut(s) 342, 367, 806, 1299
MluCI AATT 5 cut(s) 116, 219, 692, 795, 817
MlyI GAGTC 6 cut(s) 424, 464, 476, 773, 820, 1304
Mph1103I ATGCAT 1 cut(s) 318
MseI TTAA 7 cut(s) 222, 255, 411, 836, 1103, 1250, 1269
MslI CAYNNNNRTG 1 cut(s) 1236
MspI CCGG 2 cut(s) 26, 895
MspR9I CCNGG 3 cut(s) 449, 896, 1236
Mva1269I GAATGC 2 cut(s) 316, 1128
MvaI CCWGG 2 cut(s) 449, 1236
MwoI GCNNNNNNNGC 3 cut(s) 66, 337, 362
NciI CCSGG 1 cut(s) 896
NcoI CCATGG 2 cut(s) 332, 807
NdeII GATC 5 cut(s) 74, 181, 205, 232, 474
NlaIII CATG 5 cut(s) 336, 811, 834, 982, 1359
NlaIV GGNNCC 3 cut(s) 339, 805, 1035
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 1005
NsiI ATGCAT 1 cut(s) 318
PagI TCATGA 1 cut(s) 1355
PctI GAATGC 2 cut(s) 316, 1128
PfeI GAWTC 6 cut(s) 287, 461, 712, 731, 933, 950
PkrI GCNGC 2 cut(s) 68, 1282
PleI GAGTC 6 cut(s) 423, 463, 475, 772, 820, 1304
PmaCI CACGTG 1 cut(s) 1040
PmlI CACGTG 1 cut(s) 1040
PpsI GAGTC 6 cut(s) 423, 463, 475, 772, 820, 1304
Ppu21I YACGTR 1 cut(s) 1040
PshBI ATTAAT 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 1299
Psp6I CCWGG 2 cut(s) 447, 1234
PspCI CACGTG 1 cut(s) 1040
PspGI CCWGG 2 cut(s) 447, 1234
PspN4I GGNNCC 3 cut(s) 339, 805, 1035
PspPI GGNCC 2 cut(s) 160, 1094
PstI CTGCAG 1 cut(s) 373
PstNI CAGNNNCTG 1 cut(s) 1151
PsuI RGATCY 1 cut(s) 74
RsaI GTAC 1 cut(s) 658
RsaNI GTAC 1 cut(s) 657
RseI CAYNNNNRTG 1 cut(s) 1236
SacI GAGCTC 1 cut(s) 1299
SaqAI TTAA 7 cut(s) 222, 255, 411, 836, 1103, 1250, 1269
SatI GCNGC 2 cut(s) 67, 1281
Sau3AI GATC 5 cut(s) 74, 181, 205, 232, 474
Sau96I GGNCC 2 cut(s) 160, 1094
SchI GAGTC 6 cut(s) 424, 464, 476, 773, 820, 1304
ScrFI CCNGG 3 cut(s) 449, 896, 1236
SduI GDGCHC 4 cut(s) 342, 367, 806, 1299
SfaNI GCATC 2 cut(s) 661, 973
SfcI CTRYAG 3 cut(s) 369, 633, 1152
SinI GGWCC 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 1236
SpeI ACTAGT 1 cut(s) 662
Sse9I AATT 5 cut(s) 116, 219, 692, 795, 817
SsiI CCGC 2 cut(s) 66, 69
SspMI CTAG 3 cut(s) 239, 663, 957
SstI GAGCTC 1 cut(s) 1299
StyD4I CCNGG 3 cut(s) 447, 894, 1234
StyI CCWWGG 2 cut(s) 332, 807
TaaI ACNGT 3 cut(s) 379, 534, 648
TaiI ACGT 2 cut(s) 51, 1042
TaqI TCGA 5 cut(s) 20, 53, 80, 135, 791
TasI AATT 5 cut(s) 116, 219, 692, 795, 817
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 6 cut(s) 287, 461, 712, 731, 933, 950
Tru1I TTAA 7 cut(s) 222, 255, 411, 836, 1103, 1250, 1269
Tru9I TTAA 7 cut(s) 222, 255, 411, 836, 1103, 1250, 1269
TscAI CASTG 2 cut(s) 792, 967
TseFI GTSAC 1 cut(s) 1005
TseI GCWGC 1 cut(s) 1280
Tsp45I GTSAC 1 cut(s) 1005
TspDTI ATGAA 4 cut(s) 24, 1059, 1074, 1344
TspRI CASTG 2 cut(s) 792, 967
VpaK11BI GGWCC 1 cut(s) 160
VspI ATTAAT 1 cut(s) 222
XapI RAATTY 2 cut(s) 692, 817
XspI CTAG 3 cut(s) 239, 663, 957
Zsp2I ATGCAT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.