Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8291533.1

Orthogroup ID

OG0006744

Physical Location & Seq

Genomic Coordinates Forward (+)

67 .. 678

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8291533.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgccttccaaacctatggtgtttgagagggttacatctaatactacagataggcgacagttttttggtactactagtggtgatgcaaatgatgatttgcctgaatttgtagcgatagagccgattccctctaagccttctgattcagttactactgagacaggaggagttgttgagtctggctttgtttctacaccattgtcgaaaattgggggctccatggttctgaatttgatgactccatgcttaaagtctcctcctaaatcttgtgtcctgcttgaacccatttcggaaaagggacatcaccgggtttgtaatcgtaaatctaccccatatcctgctggaatcagatattctggtgattcctctagcagtgaaacttctgacgacatggatgcctcaccagattggtgtatgtcaccacctaaaacttgtgttttactggagccacgtgatgaaaagtcttcagatgaagtaggtcatcttcaagatacacaactgaatgggcctcttttaaaagataatgagggtgtaggagacattcatcaaatcaagacaggtattggctatttattgtttgcttctttactatttctttgggtgagcacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

21.97

Weight (kDa)

4.87

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12540 AT4G12540 AT4G12540 AT4G12540 AT4G12540
fragaria_vesca	FvH4_6g32410 FvH4_6g32410
malus_domestica	MD09G1202700.v1.1 MD17G1183900.v1.1
prunus_persica	Prupe.3G058900_v2.0.a1
pyrus_communis	pycom09g11960 pycom17g19330
rosa_chinensis	RchiOBHm_Chr2g0140551
rosa_laevigata	RLG00000019877
rosa_multiflora	Rmu_co8291533.1_g000001 Rmu_sc0002521.1_g000027 Rmu_ssc0000213.1_g000127
rosa_roxburghii	Rroxscaffold_153G00436640 Rroxscaffold_2G00104690 Rroxscaffold_2G00104700
rosa_rugosa	Rorug02G0363500
rosa_samantha	Rh2AG414500 Rh2BG424400 Rh2CG400900 Rh2DG434400
rosa_wichuraiana	Rw2G033950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	104, 229
AcuI	CTGAAG	1 cut(s)	450
AcvI	CACGTG	1 cut(s)	452
AfaI	GTAC	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	281, 488
AhlI	ACTAGT	1 cut(s)	74
Alw21I	GWGCWC	1 cut(s)	608
Alw26I	GTCTC	3 cut(s)	152, 258, 531
AoxI	GGCC	1 cut(s)	506
ApoI	RAATTY	2 cut(s)	104, 229
AspS9I	GGNCC	1 cut(s)	506
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	5 cut(s)	92, 296, 371, 393, 411
BanII	GRGCYC	1 cut(s)	218
BarI	GAAGNNNNNNTAC	2 cut(s)	468, 500
BbrPI	CACGTG	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	608
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	3 cut(s)	152, 258, 531
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	2 cut(s)	75, 369
BfmI	CTRYAG	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	2 cut(s)	217, 447
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	2 cut(s)	73, 385
BpiI	GAAGAC	1 cut(s)	456
BpmI	CTGGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	452
BsaJI	CCNNGG	1 cut(s)	219
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bse1I	ACTGG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	447
BseRI	GAGGAG	2 cut(s)	180, 246
BshFI	GGCC	1 cut(s)	508
BsiHKAI	GWGCWC	1 cut(s)	608
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	312
BsmAI	GTCTC	3 cut(s)	152, 258, 531
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	508
Bsp1286I	GDGCHC	2 cut(s)	218, 608
Bsp19I	CCATGG	1 cut(s)	219
BspANI	GGCC	1 cut(s)	508
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	217, 447
BsrI	ACTGG	1 cut(s)	447
BssECI	CCNNGG	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	452
BstDEI	CTNAG	2 cut(s)	132, 156
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	400
BstMAI	GTCTC	3 cut(s)	152, 258, 531
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	456
BstXI	CCANNNNNNTGG	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	508
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	400
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	3 cut(s)	220, 243, 391
CviJI	RGCY	7 cut(s)	121, 136, 183, 216, 448, 508, 567
CviKI_1	RGCY	7 cut(s)	121, 136, 183, 216, 448, 508, 567
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	2 cut(s)	132, 156
DraI	TTTAAA	1 cut(s)	516
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	450
Eco72I	CACGTG	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	3 cut(s)	223, 246, 394
FaiI	YATR	7 cut(s)	17, 221, 244, 334, 392, 416, 610
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	3 cut(s)	219, 242, 390
FokI	GGATG	1 cut(s)	407
FriOI	GRGCYC	1 cut(s)	218
FspBI	CTAG	2 cut(s)	75, 369
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	1 cut(s)	508
HapII	CCGG	1 cut(s)	307
Hin1II	CATG	3 cut(s)	223, 246, 394
HinfI	GANTC	6 cut(s)	124, 143, 176, 238, 345, 362
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	5 cut(s)	92, 296, 371, 393, 411
Hpy188I	TCNGA	6 cut(s)	142, 228, 292, 350, 385, 469
Hpy188III	TCNNGA	2 cut(s)	488, 553
HpyAV	CCTTC	2 cut(s)	15, 147
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	1 cut(s)	86
HpyF3I	CTNAG	2 cut(s)	132, 156
HpySE526I	ACGT	1 cut(s)	451
Hsp92II	CATG	3 cut(s)	223, 246, 394
LmnI	GCTCC	2 cut(s)	221, 445
LweI	GCATC	2 cut(s)	73, 385
MaeI	CTAG	2 cut(s)	75, 369
MaeII	ACGT	1 cut(s)	451
MaeIII	GTNAC	3 cut(s)	31, 148, 417
MboII	GAAGA	2 cut(s)	456, 476
MhlI	GDGCHC	2 cut(s)	218, 608
MluCI	AATT	3 cut(s)	104, 207, 229
MlyI	GAGTC	2 cut(s)	185, 232
MnlI	CCTC	8 cut(s)	21, 139, 158, 267, 376, 409, 519, 520
MseI	TTAA	2 cut(s)	248, 515
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	1 cut(s)	308
NciI	CCSGG	1 cut(s)	308
NcoI	CCATGG	1 cut(s)	219
NlaIII	CATG	3 cut(s)	223, 246, 394
NlaIV	GGNNCC	2 cut(s)	217, 447
NmuCI	GTSAC	1 cut(s)	417
PfeI	GAWTC	4 cut(s)	124, 143, 345, 362
PleI	GAGTC	2 cut(s)	184, 232
PmaCI	CACGTG	1 cut(s)	452
PmlI	CACGTG	1 cut(s)	452
PpsI	GAGTC	2 cut(s)	184, 232
Ppu21I	YACGTR	1 cut(s)	452
PspCI	CACGTG	1 cut(s)	452
PspN4I	GGNNCC	2 cut(s)	217, 447
PspPI	GGNCC	1 cut(s)	506
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	248, 515
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	2 cut(s)	185, 232
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	2 cut(s)	218, 608
SetI	ASST	5 cut(s)	16, 427, 454, 481, 562
SfaNI	GCATC	2 cut(s)	73, 385
SfcI	CTRYAG	1 cut(s)	45
SpeI	ACTAGT	1 cut(s)	74
Sse9I	AATT	3 cut(s)	104, 207, 229
SspMI	CTAG	2 cut(s)	75, 369
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	1 cut(s)	203
TasI	AATT	3 cut(s)	104, 207, 229
TfiI	GAWTC	4 cut(s)	124, 143, 345, 362
Tru1I	TTAA	2 cut(s)	248, 515
Tru9I	TTAA	2 cut(s)	248, 515
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	1 cut(s)	417
Tsp45I	GTSAC	1 cut(s)	417
TspDTI	ATGAA	3 cut(s)	471, 486, 533
TspRI	CASTG	1 cut(s)	379
XapI	RAATTY	2 cut(s)	104, 229
XspI	CTAG	2 cut(s)	75, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.