Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002521.1

Orthogroup ID

OG0006744

Physical Location & Seq

Genomic Coordinates Reverse (-)

82384 .. 83552

Gene Structure 1169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002521.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgtgcatgtactcagtcttttggatgcaattgcagccatgggtgcccagatttcagaaggcactttgtgctcctgcagaaacggtagttgtgagtgaagttgagagtggtgagattaagagtcctgaagttgaggggaaagcgattgagaccctggaagagtctgattcagagtcgttgatctcgccttctccccttgtttcgtggcgtgctgactgcactatccagagaggaagacagttgtttatgcttacgccgcttcccatatcaaagtctctgtcatccaaacccccaatgccttccaaacctatggtgtttgagagggttacatctaatactacagataggcgacagttttttggtactactagtggtgatgcaaatgatgatttgcctgaatttgtagcgatagagccgattccctctaagccttctgattcagttactactgagacaggaggagttgttgagtctggctttgtttctacaccagtgtcgaaaattgggggctccatggttctgaatttgatgactccatgcttaaagtctcctcctaaatcttgtgtcctgcttgaacccatttcggaaaagggacatcaccgggtttgtaatcgtaaatctaccccatatcctgctggaatcagatattctggtgattcctctagcagtgaaacttctgacgacatggatgcctcaccagattggtgtatgtcaccacctaaaacttgtgttttactggagccacgtgatgaaaagtcttcagatgaagtaggtcatcttcaagatacacaactgaatgggcctcttttaaaagataatgagggtgtaggaggcattcatcaaatcaagacagagcctgtaggtggtggcagatgtgccatagaaagcacaccaatctggaaacaagctggaagtgtagtagttcacaaaggcaaacatcctggtgagaatactttaaagagggagttgtggattaagtttgaagcagcttctacaaatgagctcagtattgatgactctgtaactcaaaaaagacttcttgacctattggatgaggcttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

38.57

Weight (kDa)

5.05

Isoelectric Point (pI)

52.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12540 AT4G12540 AT4G12540 AT4G12540 AT4G12540
fragaria_vesca	FvH4_6g32410 FvH4_6g32410
malus_domestica	MD09G1202700.v1.1 MD17G1183900.v1.1
prunus_persica	Prupe.3G058900_v2.0.a1
pyrus_communis	pycom09g11960 pycom17g19330
rosa_chinensis	RchiOBHm_Chr2g0140551
rosa_laevigata	RLG00000019877
rosa_multiflora	Rmu_co8291533.1_g000001 Rmu_sc0002521.1_g000027 Rmu_ssc0000213.1_g000127
rosa_roxburghii	Rroxscaffold_153G00436640 Rroxscaffold_2G00104690 Rroxscaffold_2G00104700
rosa_rugosa	Rorug02G0363500
rosa_samantha	Rh2AG414500 Rh2BG424400 Rh2CG400900 Rh2DG434400
rosa_wichuraiana	Rw2G033950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AciI	CCGC	1 cut(s)	257
AcsI	RAATTY	2 cut(s)	398, 523
AcuI	CTGAAG	2 cut(s)	147, 744
AcvI	CACGTG	1 cut(s)	746
AdeI	CACNNNGTG	1 cut(s)	68
AfaI	GTAC	2 cut(s)	11, 364
AfiI	CCNNNNNNNGG	1 cut(s)	863
AgsI	TTSAA	3 cut(s)	575, 782, 983
AhlI	ACTAGT	1 cut(s)	368
AjnI	CCWGG	2 cut(s)	153, 940
AluBI	AGCT	3 cut(s)	908, 989, 1003
AluI	AGCT	3 cut(s)	908, 989, 1003
Alw21I	GWGCWC	2 cut(s)	73, 1005
Alw26I	GTCTC	4 cut(s)	143, 279, 446, 552
AlwNI	CAGNNNCTG	1 cut(s)	857
AoxI	GGCC	1 cut(s)	800
ApeKI	GCWGC	2 cut(s)	34, 986
ApoI	RAATTY	2 cut(s)	398, 523
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AspS9I	GGNCC	1 cut(s)	800
AsuC2I	CCSGG	1 cut(s)	602
AsuHPI	GGTGA	7 cut(s)	122, 386, 590, 665, 687, 705, 956
BaeGI	GKGCMC	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	2 cut(s)	512, 1005
BarI	GAAGNNNNNNTAC	2 cut(s)	762, 794
BbrPI	CACGTG	1 cut(s)	746
BbsI	GAAGAC	2 cut(s)	241, 750
Bbv12I	GWGCWC	2 cut(s)	73, 1005
BbvI	GCAGC	2 cut(s)	46, 998
BcgI	CGANNNNNNTGC	2 cut(s)	671, 705
BciT130I	CCWGG	2 cut(s)	155, 942
BcnI	CCSGG	1 cut(s)	602
BcoDI	GTCTC	4 cut(s)	143, 279, 446, 552
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	2 cut(s)	369, 663
BfmI	CTRYAG	3 cut(s)	75, 339, 858
BisI	GCNGC	3 cut(s)	35, 257, 987
BlsI	GCNGC	3 cut(s)	36, 258, 988
Bme1390I	CCNGG	3 cut(s)	155, 602, 942
BmgT120I	GGNCC	1 cut(s)	800
BmiI	GGNNCC	3 cut(s)	45, 511, 741
BmrFI	CCNGG	3 cut(s)	155, 602, 942
BmsI	GCATC	3 cut(s)	15, 367, 679
BpiI	GAAGAC	2 cut(s)	241, 750
BpmI	CTGGAG	1 cut(s)	758
BpuMI	CCSGG	1 cut(s)	602
BsaAI	YACGTR	1 cut(s)	746
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	3 cut(s)	38, 153, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	1 cut(s)	863
Bse1I	ACTGG	2 cut(s)	491, 741
BseBI	CCWGG	2 cut(s)	155, 942
BseDI	CCNNGG	3 cut(s)	38, 153, 513
BseGI	GGATG	5 cut(s)	30, 281, 694, 937, 1057
BseLI	CCNNNNNNNGG	1 cut(s)	863
BseMII	CTCAG	3 cut(s)	27, 441, 1018
BseNI	ACTGG	2 cut(s)	491, 741
BseRI	GAGGAG	2 cut(s)	474, 540
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	46, 998
BsgI	GTGCAG	1 cut(s)	202
BshFI	GGCC	1 cut(s)	802
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	2 cut(s)	73, 1005
BsiSI	CCGG	1 cut(s)	601
BslFI	GGGAC	1 cut(s)	606
BslI	CCNNNNNNNGG	1 cut(s)	863
BsmAI	GTCTC	4 cut(s)	143, 279, 446, 552
BsmFI	GGGAC	1 cut(s)	606
BsmI	GAATGC	1 cut(s)	834
BsnI	GGCC	1 cut(s)	802
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	4 cut(s)	48, 73, 512, 1005
Bsp143I	GATC	1 cut(s)	180
Bsp19I	CCATGG	2 cut(s)	38, 513
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	1 cut(s)	802
BspCNI	CTCAG	3 cut(s)	26, 442, 1017
BspHI	TCATGA	1 cut(s)	1061
BspLI	GGNNCC	3 cut(s)	45, 511, 741
BspMAI	CTGCAG	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	491, 741
BssECI	CCNNGG	3 cut(s)	38, 153, 513
BssMI	GATC	1 cut(s)	180
BssT1I	CCWWGG	2 cut(s)	38, 513
Bst2UI	CCWGG	2 cut(s)	155, 942
Bst4CI	ACNGT	3 cut(s)	85, 240, 354
Bst6I	CTCTTC	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstBAI	YACGTR	1 cut(s)	746
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	4 cut(s)	13, 426, 450, 1004
BstDSI	CCRYGG	2 cut(s)	38, 513
BstF5I	GGATG	5 cut(s)	30, 281, 694, 937, 1057
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	4 cut(s)	143, 279, 446, 552
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 43, 68, 256
BstNI	CCWGG	2 cut(s)	155, 942
BstNSI	RCATGY	1 cut(s)	10
BstSCI	CCNGG	3 cut(s)	153, 600, 940
BstSFI	CTRYAG	3 cut(s)	75, 339, 858
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	46, 998
BstV2I	GAAGAC	2 cut(s)	241, 750
BstXI	CCANNNNNNTGG	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	802
BtgI	CCRYGG	2 cut(s)	38, 513
BtsCI	GGATG	5 cut(s)	30, 281, 694, 937, 1057
BtsI	GCAGTG	1 cut(s)	673
BtsIMutI	CAGTG	2 cut(s)	498, 673
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	1 cut(s)	857
CciI	TCATGA	1 cut(s)	1061
Cfr13I	GGNCC	1 cut(s)	800
Csp6I	GTAC	2 cut(s)	10, 363
CviAII	CATG	6 cut(s)	7, 39, 514, 537, 685, 1062
CviQI	GTAC	2 cut(s)	10, 363
DdeI	CTNAG	4 cut(s)	13, 426, 450, 1004
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
DraI	TTTAAA	2 cut(s)	810, 957
DraIII	CACNNNGTG	1 cut(s)	68
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Ecl136II	GAGCTC	1 cut(s)	1003
Eco130I	CCWWGG	2 cut(s)	38, 513
Eco24I	GRGCYC	2 cut(s)	512, 1005
Eco31I	GGTCTC	1 cut(s)	143
Eco53kI	GAGCTC	1 cut(s)	1003
Eco57I	CTGAAG	2 cut(s)	147, 744
Eco72I	CACGTG	1 cut(s)	746
EcoICRI	GAGCTC	1 cut(s)	1003
EcoRII	CCWGG	2 cut(s)	153, 940
EcoT14I	CCWWGG	2 cut(s)	38, 513
EcoT38I	GRGCYC	2 cut(s)	512, 1005
ErhI	CCWWGG	2 cut(s)	38, 513
FaeI	CATG	6 cut(s)	10, 42, 517, 540, 688, 1065
FaqI	GGGAC	1 cut(s)	606
FatI	CATG	6 cut(s)	6, 38, 513, 536, 684, 1061
Fnu4HI	GCNGC	3 cut(s)	35, 257, 987
FokI	GGATG	4 cut(s)	37, 268, 701, 924
FriOI	GRGCYC	2 cut(s)	512, 1005
Fsp4HI	GCNGC	3 cut(s)	35, 257, 987
FspBI	CTAG	2 cut(s)	369, 663
GluI	GCNGC	3 cut(s)	35, 257, 987
GsuI	CTGGAG	1 cut(s)	758
HaeIII	GGCC	1 cut(s)	802
HapII	CCGG	1 cut(s)	601
Hin1II	CATG	6 cut(s)	10, 42, 517, 540, 688, 1065
HpaII	CCGG	1 cut(s)	601
HphI	GGTGA	7 cut(s)	122, 386, 590, 665, 687, 705, 956
Hpy166II	GTNNAC	1 cut(s)	925
Hpy188I	TCNGA	9 cut(s)	57, 166, 172, 436, 522, 586, 644, 679, 763
Hpy188III	TCNNGA	7 cut(s)	125, 226, 782, 847, 898, 1040, 1062
Hpy8I	GTNNAC	1 cut(s)	925
HpyAV	CCTTC	4 cut(s)	52, 198, 309, 441
HpyCH4III	ACNGT	3 cut(s)	85, 240, 354
HpyCH4IV	ACGT	1 cut(s)	745
HpyCH4V	TGCA	6 cut(s)	6, 28, 34, 77, 219, 380
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 43, 68, 256
HpyF3I	CTNAG	4 cut(s)	13, 426, 450, 1004
HpySE526I	ACGT	1 cut(s)	745
Hsp92II	CATG	6 cut(s)	10, 42, 517, 540, 688, 1065
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	3 cut(s)	76, 515, 739
Lsp1109I	GCAGC	2 cut(s)	46, 998
LweI	GCATC	3 cut(s)	15, 367, 679
MaeI	CTAG	2 cut(s)	369, 663
MaeII	ACGT	1 cut(s)	745
MaeIII	GTNAC	4 cut(s)	325, 442, 711, 1021
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	4 cut(s)	170, 246, 750, 770
MfeI	CAATTG	1 cut(s)	29
MhlI	GDGCHC	4 cut(s)	48, 73, 512, 1005
MluCI	AATT	4 cut(s)	29, 398, 501, 523
MlyI	GAGTC	6 cut(s)	130, 170, 182, 479, 526, 1010
MseI	TTAA	5 cut(s)	117, 542, 809, 956, 975
MslI	CAYNNNNRTG	1 cut(s)	942
MspI	CCGG	1 cut(s)	601
MspR9I	CCNGG	3 cut(s)	155, 602, 942
MunI	CAATTG	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	834
MvaI	CCWGG	2 cut(s)	155, 942
MwoI	GCNNNNNNNGC	4 cut(s)	34, 43, 68, 256
NciI	CCSGG	1 cut(s)	602
NcoI	CCATGG	2 cut(s)	38, 513
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	6 cut(s)	10, 42, 517, 540, 688, 1065
NlaIV	GGNNCC	3 cut(s)	45, 511, 741
NmuCI	GTSAC	1 cut(s)	711
NspI	RCATGY	1 cut(s)	10
PagI	TCATGA	1 cut(s)	1061
PctI	GAATGC	1 cut(s)	834
PfeI	GAWTC	5 cut(s)	167, 418, 437, 639, 656
PkrI	GCNGC	3 cut(s)	36, 258, 988
PleI	GAGTC	6 cut(s)	129, 169, 181, 478, 526, 1010
PmaCI	CACGTG	1 cut(s)	746
PmlI	CACGTG	1 cut(s)	746
PpsI	GAGTC	6 cut(s)	129, 169, 181, 478, 526, 1010
Ppu21I	YACGTR	1 cut(s)	746
Psp124BI	GAGCTC	1 cut(s)	1005
Psp6I	CCWGG	2 cut(s)	153, 940
PspCI	CACGTG	1 cut(s)	746
PspGI	CCWGG	2 cut(s)	153, 940
PspN4I	GGNNCC	3 cut(s)	45, 511, 741
PspPI	GGNCC	1 cut(s)	800
PstI	CTGCAG	1 cut(s)	79
PstNI	CAGNNNCTG	1 cut(s)	857
RsaI	GTAC	2 cut(s)	11, 364
RsaNI	GTAC	2 cut(s)	10, 363
RseI	CAYNNNNRTG	1 cut(s)	942
SacI	GAGCTC	1 cut(s)	1005
SaqAI	TTAA	5 cut(s)	117, 542, 809, 956, 975
SatI	GCNGC	3 cut(s)	35, 257, 987
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	800
SchI	GAGTC	6 cut(s)	130, 170, 182, 479, 526, 1010
ScrFI	CCNGG	3 cut(s)	155, 602, 942
SduI	GDGCHC	4 cut(s)	48, 73, 512, 1005
SetI	ASST	9 cut(s)	310, 721, 748, 775, 865, 910, 991, 1005, 1047
SfaNI	GCATC	3 cut(s)	15, 367, 679
SfcI	CTRYAG	3 cut(s)	75, 339, 858
SmiMI	CAYNNNNRTG	1 cut(s)	942
SpeI	ACTAGT	1 cut(s)	368
Sse9I	AATT	4 cut(s)	29, 398, 501, 523
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	2 cut(s)	369, 663
SstI	GAGCTC	1 cut(s)	1005
StyD4I	CCNGG	3 cut(s)	153, 600, 940
StyI	CCWWGG	2 cut(s)	38, 513
TaaI	ACNGT	3 cut(s)	85, 240, 354
TaiI	ACGT	1 cut(s)	748
TaqI	TCGA	1 cut(s)	497
TasI	AATT	4 cut(s)	29, 398, 501, 523
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	1 cut(s)	259
TfiI	GAWTC	5 cut(s)	167, 418, 437, 639, 656
Tru1I	TTAA	5 cut(s)	117, 542, 809, 956, 975
Tru9I	TTAA	5 cut(s)	117, 542, 809, 956, 975
TscAI	CASTG	2 cut(s)	498, 673
TseFI	GTSAC	1 cut(s)	711
TseI	GCWGC	2 cut(s)	34, 986
Tsp45I	GTSAC	1 cut(s)	711
TspDTI	ATGAA	4 cut(s)	765, 780, 827, 1050
TspRI	CASTG	2 cut(s)	498, 673
XapI	RAATTY	2 cut(s)	398, 523
XceI	RCATGY	1 cut(s)	10
XspI	CTAG	2 cut(s)	369, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.