Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006744

Physical Location & Seq

Genomic Coordinates Forward (+)

18912782 .. 18914972

Gene Structure 2191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1202700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGCCGAAAAACGAAGAGAAAGGGAGGTCAGTGAGGAAGGCGCTGAGGGAGATATCGAACAACCATGGAGGCGGCGGCGGCGGAGGAGGAGGAGGGAGGTTCTCTAAATCATTCGCCACCGCGAAGAAGAAAGAAAAGGAAGCACGCAAGCTCAGGGTCCAAGAACATGATAAAGCAGAAAAGGACCACCAAAACGACGACGCTCTCGATCGCCTCCTGCTCGTTCAGTCCGATCTCTCTGCCCTAACGCACCAGATTGATGAATTGGTTGTGCAAGCATTTAAATGCCAAGGAAAAGCAACCAAAGAAGTCGAATCCTTCCCGAATTTCTTGTCTGAGATGCTTTCGTCTTTGAAGCCATGGATGCCCAGGTTTCAGAAGGCACTCTCCTATCCGGTGGAGTCTGCTGCAGACGAAGGAGAGAGTGTAGAGATTGCGAGTCCACAAGACTCCTTAATCTCTCCTTCTCCCCTTGTGTCTTGGCGTGCAGACTGCACTATCGAAAGAGGGAGACATCTGTTTAAGCTTACCCCTCTTCCCATATCAAAGTCTCTGTCATCCAGACCCCCAGTCCCTTCTAGATCATCAGTCTTTGAGAGAATGACTTCATGTACTGTTGATAGGATACCAAAGTTTCATGCTACTTTTGGAGATGCAAATGATTCGCTTGAGCTTGTGGCAGCAAAGCCAACTCCAATTAAGCCTTCTAATTCAGTTACTACTGAAGCAGGAAGCAATCTCAAGTCTGGGTTTGTTTCTCCTTCGCCAATGTTTCCAAAGCAAGGGGGATCCATGGTTGTGAATATGATGACTCCATGCCTAAAAATGTCTCCTCCTAAATCATGTGTTCTGCTTGAACCCTTTTCGGAGTCCTCTCCAAAGGTTCATCATGGGGTTCATAAATCCACCCCGTTTCCTGTTGGATTCACGTATTGCAGCAATTCCTCTGGCAGTGAAGCTTCTGGGGATTTGGCTTTCAGGTATCCAGAGCTGTTGGCACTACAACAACCGTTCAAATCAGAAATTAGAAAGAACCATGTTGAATCATCACCAGAATGGTGCATATCGCCTCCAAAAACTTGTGTTTTACTTGATCCGCATGATGAAAAGTCTCCGAACAATGCCGATGCTGATTCCCAATTGCTCATTACCGGGCATCTTCTAGATAACCATATCAATTTTTCTATATCAAAAGAAGATGATGGTCAAGGAGGCATTCACCCAATCAAGACATCTTCTCTTCATAAGCCTGCGGGTGGCAGCTTTGCAATGATAGAAAGCACTCCCATCTGGAAAGAAGCTGAAAGCGTTGTTCGAGTGGGCAAATATCCTGGTGAGAATACTCTGAAGCGGGAGTTATGGACAAAGTTTGAAGCAGCTTCTATAAATGGGGTTCGATTTAACGACACCGCAACTCATAAAGGATTTCTTGACCGATTGGATGAGGTTGTCGACGGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

488

Amino Acids

53.24

Weight (kDa)

6.98

Isoelectric Point (pI)

52.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12540 AT4G12540 AT4G12540 AT4G12540 AT4G12540
fragaria_vesca	FvH4_6g32410 FvH4_6g32410
malus_domestica	MD09G1202700.v1.1 MD17G1183900.v1.1
prunus_persica	Prupe.3G058900_v2.0.a1
pyrus_communis	pycom09g11960 pycom17g19330
rosa_chinensis	RchiOBHm_Chr2g0140551
rosa_laevigata	RLG00000019877
rosa_multiflora	Rmu_co8291533.1_g000001 Rmu_sc0002521.1_g000027 Rmu_ssc0000213.1_g000127
rosa_roxburghii	Rroxscaffold_153G00436640 Rroxscaffold_2G00104690 Rroxscaffold_2G00104700
rosa_rugosa	Rorug02G0363500
rosa_samantha	Rh2AG414500 Rh2BG424400 Rh2CG400900 Rh2DG434400
rosa_wichuraiana	Rw2G033950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1452
AccII	CGCG	1 cut(s)	122
AciI	CCGC	9 cut(s)	72, 75, 78, 81, 120, 1097, 1253, 1351, 1410
AclWI	GGATC	3 cut(s)	783, 796, 1088
AcsI	RAATTY	1 cut(s)	325
AcuI	CTGAAG	2 cut(s)	744, 1367
AfaI	GTAC	1 cut(s)	613
AfiI	CCNNNNNNNGG	2 cut(s)	782, 1256
AgsI	TTSAA	5 cut(s)	355, 857, 1015, 1043, 1373
AhdI	GACNNNNNGTC	1 cut(s)	569
AjnI	CCWGG	2 cut(s)	368, 1330
AjuI	GAANNNNNNNTTGG	2 cut(s)	688, 720
AluBI	AGCT	8 cut(s)	151, 526, 673, 959, 991, 1263, 1301, 1379
AluI	AGCT	8 cut(s)	151, 526, 673, 959, 991, 1263, 1301, 1379
Alw26I	GTCTC	4 cut(s)	505, 555, 834, 1116
AlwI	GGATC	3 cut(s)	783, 796, 1088
ApeKI	GCWGC	5 cut(s)	407, 680, 936, 1260, 1376
ApoI	RAATTY	1 cut(s)	325
ArsI	GACNNNNNNTTYG	4 cut(s)	317, 349, 539, 571
Asp700I	GAANNNNTTC	1 cut(s)	604
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	157, 184
AsuC2I	CCSGG	1 cut(s)	1153
AsuHPI	GGTGA	3 cut(s)	1041, 1211, 1346
AvaII	GGWCC	2 cut(s)	157, 184
BaeI	ACNNNNGTAYC	2 cut(s)	617, 650
BamHI	GGATCC	1 cut(s)	788
BbvCI	CCTCAGC	1 cut(s)	44
BbvI	GCAGC	5 cut(s)	394, 692, 948, 1272, 1388
BccI	CCATC	2 cut(s)	1196, 1295
BcgI	CGANNNNNNTGC	4 cut(s)	221, 255, 645, 679
BciT130I	CCWGG	2 cut(s)	370, 1332
BciVI	GTATCC	2 cut(s)	618, 993
BcnI	CCSGG	1 cut(s)	1153
BcoDI	GTCTC	4 cut(s)	505, 555, 834, 1116
BfaI	CTAG	2 cut(s)	579, 1163
BfmI	CTRYAG	1 cut(s)	408
BfoI	RGCGCY	1 cut(s)	44
BfuI	GTATCC	2 cut(s)	618, 993
BisI	GCNGC	8 cut(s)	73, 76, 79, 408, 681, 937, 1261, 1377
BlsI	GCNGC	8 cut(s)	74, 77, 80, 409, 682, 938, 1262, 1378
Bme1390I	CCNGG	3 cut(s)	370, 1153, 1332
Bme18I	GGWCC	2 cut(s)	157, 184
BmeRI	GACNNNNNGTC	1 cut(s)	569
BmgT120I	GGNCC	2 cut(s)	157, 184
BmiI	GGNNCC	2 cut(s)	158, 790
BmrFI	CCNGG	3 cut(s)	370, 1153, 1332
BmrI	ACTGGG	1 cut(s)	563
BmsI	GCATC	5 cut(s)	330, 354, 643, 1117, 1165
BmuI	ACTGGG	1 cut(s)	563
Bpu10I	CCTNAGC	2 cut(s)	44, 152
BpuEI	CTTGAG	2 cut(s)	689, 725
BpuMI	CCSGG	1 cut(s)	1153
BsaAI	YACGTR	1 cut(s)	930
BsaJI	CCNNGG	5 cut(s)	64, 289, 359, 368, 792
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	782, 1256
Bse1I	ACTGG	1 cut(s)	569
Bse3DI	GCAATG	1 cut(s)	1275
BseBI	CCWGG	2 cut(s)	370, 1332
BseDI	CCNNGG	5 cut(s)	64, 289, 359, 368, 792
BseGI	GGATG	3 cut(s)	369, 557, 1447
BseLI	CCNNNNNNNGG	2 cut(s)	782, 1256
BseMI	GCAATG	1 cut(s)	1275
BseMII	CTCAG	3 cut(s)	35, 166, 327
BseNI	ACTGG	1 cut(s)	569
BseRI	GAGGAG	4 cut(s)	99, 102, 105, 822
BseXI	GCAGC	5 cut(s)	394, 692, 948, 1272, 1388
BsgI	GTGCAG	2 cut(s)	478, 507
Bsh1236I	CGCG	1 cut(s)	122
Bsh1285I	CGRYCG	1 cut(s)	211
BsiEI	CGRYCG	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	395, 1152
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	2 cut(s)	782, 1256
BsmAI	GTCTC	4 cut(s)	505, 555, 834, 1116
BsmFI	GGGAC	1 cut(s)	557
BsmI	GAATGC	1 cut(s)	1215
Bsp143I	GATC	5 cut(s)	208, 232, 581, 788, 1093
Bsp19I	CCATGG	3 cut(s)	64, 359, 792
BspACI	CCGC	9 cut(s)	72, 75, 78, 81, 120, 1097, 1253, 1351, 1410
BspCNI	CTCAG	3 cut(s)	36, 165, 328
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	2 cut(s)	158, 790
BspMAI	CTGCAG	1 cut(s)	412
BspPI	GGATC	3 cut(s)	783, 796, 1088
BsrDI	GCAATG	1 cut(s)	1275
BsrI	ACTGG	1 cut(s)	569
BssECI	CCNNGG	5 cut(s)	64, 289, 359, 368, 792
BssMI	GATC	5 cut(s)	208, 232, 581, 788, 1093
BssT1I	CCWWGG	4 cut(s)	64, 289, 359, 792
Bst2UI	CCWGG	2 cut(s)	370, 1332
Bst4CI	ACNGT	2 cut(s)	616, 1011
Bst6I	CTCTTC	3 cut(s)	9, 540, 1245
BstBAI	YACGTR	1 cut(s)	930
BstC8I	GCNNGC	5 cut(s)	145, 149, 276, 486, 1251
BstDEI	CTNAG	3 cut(s)	44, 152, 336
BstDSI	CCRYGG	3 cut(s)	64, 359, 792
BstF5I	GGATG	3 cut(s)	369, 557, 1447
BstFNI	CGCG	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	5 cut(s)	211, 235, 584, 791, 1096
BstMAI	GTCTC	4 cut(s)	505, 555, 834, 1116
BstMBI	GATC	5 cut(s)	208, 232, 581, 788, 1093
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 364
BstNI	CCWGG	2 cut(s)	370, 1332
BstSCI	CCNGG	3 cut(s)	368, 1151, 1330
BstSFI	CTRYAG	1 cut(s)	408
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	5 cut(s)	394, 692, 948, 1272, 1388
BstX2I	RGATCY	1 cut(s)	788
BstYI	RGATCY	1 cut(s)	788
BsuI	GTATCC	2 cut(s)	618, 993
BtgI	CCRYGG	3 cut(s)	64, 359, 792
BtsCI	GGATG	3 cut(s)	369, 557, 1447
BtsI	GCAGTG	1 cut(s)	958
BtsIMutI	CAGTG	2 cut(s)	36, 958
Cac8I	GCNNGC	5 cut(s)	145, 149, 276, 486, 1251
CfoI	GCGC	1 cut(s)	43
Cfr13I	GGNCC	2 cut(s)	157, 184
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	612
CviQI	GTAC	1 cut(s)	612
DdeI	CTNAG	3 cut(s)	44, 152, 336
DpnI	GATC	5 cut(s)	210, 234, 583, 790, 1095
DpnII	GATC	5 cut(s)	208, 232, 581, 788, 1093
DraI	TTTAAA	1 cut(s)	283
DriI	GACNNNNNGTC	1 cut(s)	569
Eam1104I	CTCTTC	3 cut(s)	9, 540, 1245
Eam1105I	GACNNNNNGTC	1 cut(s)	569
EarI	CTCTTC	3 cut(s)	9, 540, 1245
EciI	GGCGGA	1 cut(s)	96
Eco130I	CCWWGG	4 cut(s)	64, 289, 359, 792
Eco32I	GATATC	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	157, 184
Eco57I	CTGAAG	2 cut(s)	744, 1367
EcoRII	CCWGG	2 cut(s)	368, 1330
EcoRV	GATATC	1 cut(s)	54
EcoT14I	CCWWGG	4 cut(s)	64, 289, 359, 792
ErhI	CCWWGG	4 cut(s)	64, 289, 359, 792
FalI	AAGNNNNNCTT	2 cut(s)	1413, 1445
FaqI	GGGAC	1 cut(s)	557
FauI	CCCGC	2 cut(s)	1246, 1344
FblI	GTMKAC	1 cut(s)	1452
Fnu4HI	GCNGC	8 cut(s)	73, 76, 79, 408, 681, 937, 1261, 1377
FokI	GGATG	3 cut(s)	376, 544, 1454
Fsp4HI	GCNGC	8 cut(s)	73, 76, 79, 408, 681, 937, 1261, 1377
FspBI	CTAG	2 cut(s)	579, 1163
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	8 cut(s)	73, 76, 79, 408, 681, 937, 1261, 1377
HaeII	RGCGCY	1 cut(s)	44
HapII	CCGG	2 cut(s)	395, 1152
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HincII	GTYRAC	1 cut(s)	1453
HindII	GTYRAC	1 cut(s)	1453
HindIII	AAGCTT	2 cut(s)	524, 957
HpaII	CCGG	2 cut(s)	395, 1152
HphI	GGTGA	3 cut(s)	1041, 1211, 1346
Hpy166II	GTNNAC	2 cut(s)	443, 1453
Hpy188I	TCNGA	7 cut(s)	232, 337, 378, 868, 1021, 1116, 1347
Hpy188III	TCNNGA	9 cut(s)	206, 322, 561, 579, 986, 1163, 1228, 1291, 1430
Hpy8I	GTNNAC	2 cut(s)	443, 1453
Hpy99I	CGWCG	3 cut(s)	200, 203, 1457
HpyAV	CCTTC	8 cut(s)	31, 328, 373, 410, 474, 585, 714, 771
HpyCH4III	ACNGT	2 cut(s)	616, 1011
HpyCH4IV	ACGT	1 cut(s)	929
HpyCH4V	TGCA	8 cut(s)	274, 410, 488, 495, 656, 936, 1062, 1268
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 364
HpyF3I	CTNAG	3 cut(s)	44, 152, 336
HpySE526I	ACGT	1 cut(s)	929
HspAI	GCGC	1 cut(s)	41
Kzo9I	GATC	5 cut(s)	208, 232, 581, 788, 1093
Lsp1109I	GCAGC	5 cut(s)	394, 692, 948, 1272, 1388
LweI	GCATC	5 cut(s)	330, 354, 643, 1117, 1165
MaeI	CTAG	2 cut(s)	579, 1163
MaeII	ACGT	1 cut(s)	929
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	5 cut(s)	210, 234, 583, 790, 1095
MboI	GATC	5 cut(s)	208, 232, 581, 788, 1093
MboII	GAAGA	8 cut(s)	26, 136, 139, 527, 1151, 1208, 1227, 1232
MfeI	CAATTG	1 cut(s)	1139
MflI	RGATCY	1 cut(s)	788
MluCI	AATT	8 cut(s)	263, 325, 696, 709, 940, 1023, 1139, 1177
MlyI	GAGTC	5 cut(s)	410, 443, 448, 805, 878
MmeI	TCCRAC	1 cut(s)	901
MroXI	GAANNNNTTC	1 cut(s)	604
MseI	TTAA	5 cut(s)	282, 455, 522, 699, 1401
MslI	CAYNNNNRTG	3 cut(s)	283, 797, 1054
MspI	CCGG	2 cut(s)	395, 1152
MspR9I	CCNGG	3 cut(s)	370, 1153, 1332
MunI	CAATTG	1 cut(s)	1139
Mva1269I	GAATGC	1 cut(s)	1215
MvaI	CCWGG	2 cut(s)	370, 1332
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	2 cut(s)	78, 364
NciI	CCSGG	1 cut(s)	1153
NcoI	CCATGG	3 cut(s)	64, 359, 792
NdeII	GATC	5 cut(s)	208, 232, 581, 788, 1093
NlaIV	GGNNCC	2 cut(s)	158, 790
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 228
PctI	GAATGC	1 cut(s)	1215
PdmI	GAANNNNTTC	1 cut(s)	604
PfeI	GAWTC	5 cut(s)	314, 662, 924, 1043, 1133
PkrI	GCNGC	8 cut(s)	74, 77, 80, 409, 682, 938, 1262, 1378
Ple19I	CGATCG	1 cut(s)	211
PleI	GAGTC	5 cut(s)	409, 443, 447, 805, 877
PpsI	GAGTC	5 cut(s)	409, 443, 447, 805, 877
Ppu21I	YACGTR	1 cut(s)	930
Psp6I	CCWGG	2 cut(s)	368, 1330
PspGI	CCWGG	2 cut(s)	368, 1330
PspN4I	GGNNCC	2 cut(s)	158, 790
PspPI	GGNCC	2 cut(s)	157, 184
PstI	CTGCAG	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	788
PvuI	CGATCG	1 cut(s)	211
RsaI	GTAC	1 cut(s)	613
RsaNI	GTAC	1 cut(s)	612
RseI	CAYNNNNRTG	3 cut(s)	283, 797, 1054
SalI	GTCGAC	1 cut(s)	1451
SaqAI	TTAA	5 cut(s)	282, 455, 522, 699, 1401
SatI	GCNGC	8 cut(s)	73, 76, 79, 408, 681, 937, 1261, 1377
Sau3AI	GATC	5 cut(s)	208, 232, 581, 788, 1093
Sau96I	GGNCC	2 cut(s)	157, 184
SchI	GAGTC	5 cut(s)	410, 443, 448, 805, 878
ScrFI	CCNGG	3 cut(s)	370, 1153, 1332
SfaNI	GCATC	5 cut(s)	330, 354, 643, 1117, 1165
SfcI	CTRYAG	1 cut(s)	408
SinI	GGWCC	2 cut(s)	157, 184
SmiI	ATTTAAAT	1 cut(s)	283
SmiMI	CAYNNNNRTG	3 cut(s)	283, 797, 1054
SmlI	CTYRAG	2 cut(s)	668, 740
SmoI	CTYRAG	2 cut(s)	668, 740
Sse9I	AATT	8 cut(s)	263, 325, 696, 709, 940, 1023, 1139, 1177
SsiI	CCGC	9 cut(s)	72, 75, 78, 81, 120, 1097, 1253, 1351, 1410
SspMI	CTAG	2 cut(s)	579, 1163
StyD4I	CCNGG	3 cut(s)	368, 1151, 1330
StyI	CCWWGG	4 cut(s)	64, 289, 359, 792
SwaI	ATTTAAAT	1 cut(s)	283
TaaI	ACNGT	2 cut(s)	616, 1011
TaiI	ACGT	1 cut(s)	932
TaqI	TCGA	7 cut(s)	56, 207, 312, 501, 1315, 1396, 1452
TaqII	GACCGA	1 cut(s)	1449
TasI	AATT	8 cut(s)	263, 325, 696, 709, 940, 1023, 1139, 1177
TatI	WGTACW	1 cut(s)	611
TauI	GCSGC	3 cut(s)	75, 78, 81
TfiI	GAWTC	5 cut(s)	314, 662, 924, 1043, 1133
Tru1I	TTAA	5 cut(s)	282, 455, 522, 699, 1401
Tru9I	TTAA	5 cut(s)	282, 455, 522, 699, 1401
TscAI	CASTG	2 cut(s)	36, 958
TseI	GCWGC	5 cut(s)	407, 680, 936, 1260, 1376
TspDTI	ATGAA	7 cut(s)	276, 597, 626, 875, 887, 1119, 1232
TspRI	CASTG	2 cut(s)	36, 958
VpaK11BI	GGWCC	2 cut(s)	157, 184
XapI	RAATTY	1 cut(s)	325
XbaI	TCTAGA	2 cut(s)	578, 1162
XmiI	GTMKAC	1 cut(s)	1452
XmnI	GAANNNNTTC	1 cut(s)	604
XspI	CTAG	2 cut(s)	579, 1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.