Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006744

Physical Location & Seq

Genomic Coordinates Forward (+)

27977307 .. 27979044

Gene Structure 1738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCTTACGCCGCTTCCCATATCAAAGTCTCTGTCATCCAAACCCCCAATGCCTTCCAAACCTATGGTGTTTGAGAGGGTTACATCTAACACTACGGATAGGCGACCGTTCTTTGGTACTACTAGTGGTGATACAAATGATGATTTGCCTGAATTTGTAGCGATAGAGCCGATTCCCTCTAAGCCTTCTGATTCAGTTACTACTGAGACAGGAGGAGTTGTTGAGTCTGGCTTTGTTTCTACACCAGCGTCGAAAATTGGGGGCTCCATGGTTCTGAATTTGATGACTCCATGCTTAAAGTCTCCTCCTAAATCTTGTGTCCTGCTTGAACCCATTTCGGAAAAGGGACATCACCGGGTTTGTAATCGTAAATCTACCCCATATCCTGCTGGAATCAGATATTCTGGTGATTCCTCTAGCAGCGAAACTTCTGACGATGTAGATGCTTCACCAGATTGGTGTATGTCACCACCTAAAACTTGTGTTTTACTGGAGCCACGTGATGAAAAGTCTTCGGATGAAGTAGGTCATCTTCAGGATACACAACTGAATGGGCCTCTTTTAAAAGATAATGAGGGTGTAGGAGGCATTCAACAAATCAAGACAGAGCCTGTAGGTGGTGGCAGATGTGCCATAGAAAAGCACACCAATCTGGAAACAAGCTGGAAGCGTAGTAGTTCGCAAAGGCAAACATCCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

25.12

Weight (kDa)

5.63

Isoelectric Point (pI)

52.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12540 AT4G12540 AT4G12540 AT4G12540 AT4G12540
fragaria_vesca	FvH4_6g32410 FvH4_6g32410
malus_domestica	MD09G1202700.v1.1 MD17G1183900.v1.1
prunus_persica	Prupe.3G058900_v2.0.a1
pyrus_communis	pycom09g11960 pycom17g19330
rosa_chinensis	RchiOBHm_Chr2g0140551
rosa_laevigata	RLG00000019877
rosa_multiflora	Rmu_co8291533.1_g000001 Rmu_sc0002521.1_g000027 Rmu_ssc0000213.1_g000127
rosa_roxburghii	Rroxscaffold_153G00436640 Rroxscaffold_2G00104690 Rroxscaffold_2G00104700
rosa_rugosa	Rorug02G0363500
rosa_samantha	Rh2AG414500 Rh2BG424400 Rh2CG400900 Rh2DG434400
rosa_wichuraiana	Rw2G033950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	11
AcsI	RAATTY	2 cut(s)	152, 277
AcuI	CTGAAG	1 cut(s)	518
AcvI	CACGTG	1 cut(s)	500
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	2 cut(s)	113, 617
AgsI	TTSAA	2 cut(s)	329, 593
AhlI	ACTAGT	1 cut(s)	122
AjnI	CCWGG	1 cut(s)	695
AluBI	AGCT	1 cut(s)	663
AluI	AGCT	1 cut(s)	663
Alw26I	GTCTC	3 cut(s)	33, 200, 306
AlwNI	CAGNNNCTG	1 cut(s)	611
AoxI	GGCC	1 cut(s)	554
ApeKI	GCWGC	1 cut(s)	420
ApoI	RAATTY	2 cut(s)	152, 277
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AspS9I	GGNCC	1 cut(s)	554
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	5 cut(s)	140, 344, 419, 441, 459
BanII	GRGCYC	1 cut(s)	266
BarI	GAAGNNNNNNTAC	2 cut(s)	516, 548
BbrPI	CACGTG	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	432
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BciT130I	CCWGG	1 cut(s)	697
BciVI	GTATCC	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	356
BcoDI	GTCTC	3 cut(s)	33, 200, 306
BcuI	ACTAGT	1 cut(s)	122
BfaI	CTAG	2 cut(s)	123, 417
BfmI	CTRYAG	1 cut(s)	612
BfuI	GTATCC	1 cut(s)	532
BisI	GCNGC	2 cut(s)	11, 421
BlsI	GCNGC	2 cut(s)	12, 422
Bme1390I	CCNGG	2 cut(s)	356, 697
BmgT120I	GGNCC	1 cut(s)	554
BmiI	GGNNCC	2 cut(s)	265, 495
BmrFI	CCNGG	2 cut(s)	356, 697
BmsI	GCATC	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	504
BpmI	CTGGAG	1 cut(s)	512
BpuMI	CCSGG	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	267
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 617
Bse1I	ACTGG	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	697
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	3 cut(s)	35, 523, 692
BseLI	CCNNNNNNNGG	2 cut(s)	113, 617
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	495
BseRI	GAGGAG	2 cut(s)	228, 294
BseXI	GCAGC	1 cut(s)	432
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	556
BsiEI	CGRYCG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	355
BslFI	GGGAC	1 cut(s)	360
BslI	CCNNNNNNNGG	2 cut(s)	113, 617
BsmAI	GTCTC	3 cut(s)	33, 200, 306
BsmFI	GGGAC	1 cut(s)	360
BsmI	GAATGC	1 cut(s)	588
BsnI	GGCC	1 cut(s)	556
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	1 cut(s)	556
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	265, 495
BsrI	ACTGG	1 cut(s)	495
BssECI	CCNNGG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	697
Bst4CI	ACNGT	1 cut(s)	108
BstBAI	YACGTR	1 cut(s)	500
BstDEI	CTNAG	2 cut(s)	180, 204
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	3 cut(s)	35, 523, 692
BstMAI	GTCTC	3 cut(s)	33, 200, 306
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	697
BstSCI	CCNGG	2 cut(s)	354, 695
BstSFI	CTRYAG	1 cut(s)	612
BstV1I	GCAGC	1 cut(s)	432
BstV2I	GAAGAC	1 cut(s)	504
BstXI	CCANNNNNNTGG	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	532
BsuRI	GGCC	1 cut(s)	556
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	3 cut(s)	35, 523, 692
CaiI	CAGNNNCTG	1 cut(s)	611
Cfr13I	GGNCC	1 cut(s)	554
CseI	GACGC	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	2 cut(s)	268, 291
CviJI	RGCY	8 cut(s)	169, 184, 231, 264, 496, 556, 610, 663
CviKI_1	RGCY	8 cut(s)	169, 184, 231, 264, 496, 556, 610, 663
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	2 cut(s)	180, 204
DraI	TTTAAA	1 cut(s)	564
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	518
Eco72I	CACGTG	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	695
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	2 cut(s)	271, 294
FaiI	YATR	7 cut(s)	20, 65, 269, 292, 382, 464, 635
FaqI	GGGAC	1 cut(s)	360
FatI	CATG	2 cut(s)	267, 290
Fnu4HI	GCNGC	2 cut(s)	11, 421
FokI	GGATG	3 cut(s)	22, 530, 679
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	11, 421
FspBI	CTAG	2 cut(s)	123, 417
GluI	GCNGC	2 cut(s)	11, 421
GsuI	CTGGAG	1 cut(s)	512
HaeIII	GGCC	1 cut(s)	556
HapII	CCGG	1 cut(s)	355
HgaI	GACGC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	271, 294
HinfI	GANTC	6 cut(s)	172, 191, 224, 286, 393, 410
HpaII	CCGG	1 cut(s)	355
HphI	GGTGA	5 cut(s)	140, 344, 419, 441, 459
Hpy188I	TCNGA	6 cut(s)	190, 276, 340, 398, 433, 517
Hpy188III	TCNNGA	3 cut(s)	536, 601, 653
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	63, 195
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	499
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	180, 204
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	2 cut(s)	271, 294
LmnI	GCTCC	2 cut(s)	269, 493
Lsp1109I	GCAGC	1 cut(s)	432
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	2 cut(s)	123, 417
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	3 cut(s)	79, 196, 465
MboII	GAAGA	2 cut(s)	504, 524
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	3 cut(s)	152, 255, 277
MlyI	GAGTC	2 cut(s)	233, 280
MnlI	CCTC	8 cut(s)	69, 187, 206, 315, 424, 567, 568, 578
MseI	TTAA	2 cut(s)	296, 563
MslI	CAYNNNNRTG	1 cut(s)	697
MspI	CCGG	1 cut(s)	355
MspR9I	CCNGG	2 cut(s)	356, 697
Mva1269I	GAATGC	1 cut(s)	588
MvaI	CCWGG	1 cut(s)	697
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	356
NcoI	CCATGG	1 cut(s)	267
NlaIII	CATG	2 cut(s)	271, 294
NlaIV	GGNNCC	2 cut(s)	265, 495
NmuCI	GTSAC	1 cut(s)	465
PctI	GAATGC	1 cut(s)	588
PfeI	GAWTC	4 cut(s)	172, 191, 393, 410
PkrI	GCNGC	2 cut(s)	12, 422
PleI	GAGTC	2 cut(s)	232, 280
PmaCI	CACGTG	1 cut(s)	500
PmlI	CACGTG	1 cut(s)	500
PpsI	GAGTC	2 cut(s)	232, 280
Ppu21I	YACGTR	1 cut(s)	500
Psp6I	CCWGG	1 cut(s)	695
PspCI	CACGTG	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	695
PspN4I	GGNNCC	2 cut(s)	265, 495
PspPI	GGNCC	1 cut(s)	554
PstNI	CAGNNNCTG	1 cut(s)	611
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	697
SaqAI	TTAA	2 cut(s)	296, 563
SatI	GCNGC	2 cut(s)	11, 421
Sau96I	GGNCC	1 cut(s)	554
SchI	GAGTC	2 cut(s)	233, 280
ScrFI	CCNGG	2 cut(s)	356, 697
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	6 cut(s)	64, 475, 502, 529, 619, 665
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	1 cut(s)	612
SmiMI	CAYNNNNRTG	1 cut(s)	697
SpeI	ACTAGT	1 cut(s)	122
Sse9I	AATT	3 cut(s)	152, 255, 277
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	2 cut(s)	123, 417
StyD4I	CCNGG	2 cut(s)	354, 695
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	1 cut(s)	251
TasI	AATT	3 cut(s)	152, 255, 277
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	4 cut(s)	172, 191, 393, 410
Tru1I	TTAA	2 cut(s)	296, 563
Tru9I	TTAA	2 cut(s)	296, 563
TseFI	GTSAC	1 cut(s)	465
TseI	GCWGC	1 cut(s)	420
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	2 cut(s)	519, 534
TspGWI	ACGGA	1 cut(s)	110
XapI	RAATTY	2 cut(s)	152, 277
XspI	CTAG	2 cut(s)	123, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.