Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000153

Orthogroup ID

OG0006744

Physical Location & Seq

Genomic Coordinates Forward (+)

162836 .. 164553

Gene Structure 1718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_153G00436640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTATTGGGCGGGTCGGGTTACAATGGGTTTCGGCCACGGCGGCGGAAGATCCTCGATATTCTCAACCACGGCGAAGAAGAAAGACAAGGAATTGCAGAGGCCGAGGGTCGAACAAGAAGAACGCAAAGAAGAGGACCAAAACGATGTCGTTTTGGATCGCCTCTTGCTCGTTCAGTCCGATCTATCAGCCCTAATTAATCAGATTGATCAGCTAGTTGTGGAAGCGCTTAAATGTAAAGCAGGAGCAAGCAAAGAAGTTGAATCCTTCACACATTTCTTATCCGAAATGCATTCGTCTTTGAAGTCATGGGTGCCCAGATTTCAGAAGGCACTCTCTGCTCCTGCAGAAACGGTGGTTGTGAGTGAAGTGGAGAGTGGTGAGATTAAGAGTCCTGAAGTTGAGGGGAAAGAGATTGAGAGCCTGGAAGAGTCTGATTCGGAGTCGTTGATCTCGCCTTCTCCCCTTGTTTCGTGGCGTGCTGACTGCACTATCCAGAGAGGAAGACAGTTGTTTATGCTTACGCCGCTTCCCATATCAAAGTCTCTGTCATCCAAACCCCCAATGCCTTCCAAACCTTTGGTGTTTGAGAGGGTTACATCTAATACTACGGATAGGCGACCGTTCTTTGGTACTACTAGTGGTGATACAAATGATGATTTGCCTGAATTTGTAGCGATAGAGCCGATTCCCTCTAAGCCTTCTGATTCAGTTACTACTGAGACAGGAGGAGTTGTTGAGTCTGGCTTTGTTTCTACACCAGCGTCGAAAATTGGGGGCTCCATGGTTCTGAATTTGATGACTCCATGCTTAAAGTCTCCTCCTAAATCTTGTGTCCTGCTTGAACCCATTTCGGAAAAGGGACATCACCGGGTTTGTAATCGTAAATCTACCCCATATCCTGCTGGAATCAGATATTCTGGTGATTCCTCTAGCAGCGAAACTTCTGACGATGTAGATGCTTCACCAGATTGGTGTATGTCACCACCTAAAACTTGTGTTTTACTGGAGCCACGTGATGAAAAGTCTTCGGATGAAGTAGGTCATCTTCAGGATACACAACTGAATGGGCCTCTTTTAAAAGATAATGAGGGTGTAGGAGGCATTCAACAAATCAAGACAGGTATTGGCTATTTATTGTTTGCTTCTTTACTATTTCTTTGGCTGAGCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

391

Amino Acids

42.7

Weight (kDa)

5.11

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12540 AT4G12540 AT4G12540 AT4G12540 AT4G12540
fragaria_vesca	FvH4_6g32410 FvH4_6g32410
malus_domestica	MD09G1202700.v1.1 MD17G1183900.v1.1
prunus_persica	Prupe.3G058900_v2.0.a1
pyrus_communis	pycom09g11960 pycom17g19330
rosa_chinensis	RchiOBHm_Chr2g0140551
rosa_laevigata	RLG00000019877
rosa_multiflora	Rmu_co8291533.1_g000001 Rmu_sc0002521.1_g000027 Rmu_ssc0000213.1_g000127
rosa_roxburghii	Rroxscaffold_153G00436640 Rroxscaffold_2G00104690 Rroxscaffold_2G00104700
rosa_rugosa	Rorug02G0363500
rosa_samantha	Rh2AG414500 Rh2BG424400 Rh2CG400900 Rh2DG434400
rosa_wichuraiana	Rw2G033950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	313
AciI	CCGC	4 cut(s)	11, 42, 45, 527
AclWI	GGATC	2 cut(s)	45, 165
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	2 cut(s)	668, 793
AcuI	CTGAAG	2 cut(s)	417, 1034
AcvI	CACGTG	1 cut(s)	1016
AfaI	GTAC	1 cut(s)	634
AfeI	AGCGCT	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	629
AgsI	TTSAA	4 cut(s)	263, 304, 845, 1109
AhlI	ACTAGT	1 cut(s)	638
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw21I	GWGCWC	1 cut(s)	1172
Alw26I	GTCTC	3 cut(s)	549, 716, 822
AlwI	GGATC	2 cut(s)	45, 165
Aor51HI	AGCGCT	1 cut(s)	228
AoxI	GGCC	3 cut(s)	34, 101, 1070
ApeKI	GCWGC	1 cut(s)	936
ApoI	RAATTY	2 cut(s)	668, 793
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
AseI	ATTAAT	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	2 cut(s)	136, 1070
AsuC2I	CCSGG	1 cut(s)	872
AsuHPI	GGTGA	6 cut(s)	392, 656, 860, 935, 957, 975
AvaII	GGWCC	1 cut(s)	136
BaeGI	GKGCMC	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	782
BarI	GAAGNNNNNNTAC	2 cut(s)	1032, 1064
BbrPI	CACGTG	1 cut(s)	1016
BbsI	GAAGAC	2 cut(s)	511, 1020
Bbv12I	GWGCWC	1 cut(s)	1172
BbvI	GCAGC	1 cut(s)	948
BceAI	ACGGC	2 cut(s)	55, 87
BcgI	CGANNNNNNTGC	2 cut(s)	941, 975
BciT130I	CCWGG	1 cut(s)	425
BciVI	GTATCC	1 cut(s)	1048
BclI	TGATCA	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	872
BcoDI	GTCTC	3 cut(s)	549, 716, 822
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	3 cut(s)	215, 639, 933
BfmI	CTRYAG	1 cut(s)	345
BfoI	RGCGCY	1 cut(s)	230
BfuI	GTATCC	1 cut(s)	1048
BglI	GCCNNNNNGGC	1 cut(s)	42
BisI	GCNGC	3 cut(s)	43, 527, 937
BlpI	GCTNAGC	1 cut(s)	1166
BlsI	GCNGC	3 cut(s)	44, 528, 938
Bme1390I	CCNGG	2 cut(s)	425, 872
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	136, 1070
BmiI	GGNNCC	3 cut(s)	315, 781, 1011
BmrFI	CCNGG	2 cut(s)	425, 872
BmsI	GCATC	1 cut(s)	949
BpiI	GAAGAC	2 cut(s)	511, 1020
BpmI	CTGGAG	1 cut(s)	1028
Bpu1102I	GCTNAGC	1 cut(s)	1166
BpuMI	CCSGG	1 cut(s)	872
BsaAI	YACGTR	1 cut(s)	1016
BsaJI	CCNNGG	4 cut(s)	37, 69, 104, 783
BsaXI	ACNNNNNCTCC	2 cut(s)	720, 750
Bsc4I	CCNNNNNNNGG	1 cut(s)	629
Bse1I	ACTGG	1 cut(s)	1011
BseBI	CCWGG	1 cut(s)	425
BseDI	CCNNGG	4 cut(s)	37, 69, 104, 783
BseGI	GGATG	2 cut(s)	551, 1039
BseLI	CCNNNNNNNGG	1 cut(s)	629
BseMII	CTCAG	2 cut(s)	711, 1157
BseNI	ACTGG	1 cut(s)	1011
BseRI	GAGGAG	2 cut(s)	744, 810
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	948
BsgI	GTGCAG	1 cut(s)	472
Bsh1285I	CGRYCG	1 cut(s)	623
BshFI	GGCC	3 cut(s)	36, 103, 1072
BshNI	GGYRCC	1 cut(s)	313
BsiEI	CGRYCG	1 cut(s)	623
BsiHKAI	GWGCWC	1 cut(s)	1172
BsiSI	CCGG	1 cut(s)	871
BslFI	GGGAC	1 cut(s)	876
BslI	CCNNNNNNNGG	1 cut(s)	629
BsmAI	GTCTC	3 cut(s)	549, 716, 822
BsmFI	GGGAC	1 cut(s)	876
BsmI	GAATGC	2 cut(s)	292, 1104
BsnI	GGCC	3 cut(s)	36, 103, 1072
Bsp1286I	GDGCHC	3 cut(s)	318, 782, 1172
Bsp143I	GATC	5 cut(s)	50, 157, 181, 208, 450
Bsp1720I	GCTNAGC	1 cut(s)	1166
Bsp19I	CCATGG	1 cut(s)	783
BspACI	CCGC	4 cut(s)	11, 42, 45, 527
BspANI	GGCC	3 cut(s)	36, 103, 1072
BspCNI	CTCAG	2 cut(s)	712, 1158
BspLI	GGNNCC	3 cut(s)	315, 781, 1011
BspMAI	CTGCAG	1 cut(s)	349
BspPI	GGATC	2 cut(s)	45, 165
BspT107I	GGYRCC	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	1011
BssECI	CCNNGG	4 cut(s)	37, 69, 104, 783
BssMI	GATC	5 cut(s)	50, 157, 181, 208, 450
BssT1I	CCWWGG	1 cut(s)	783
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	3 cut(s)	355, 510, 624
Bst6I	CTCTTC	2 cut(s)	126, 423
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstBAI	YACGTR	1 cut(s)	1016
BstC8I	GCNNGC	2 cut(s)	250, 480
BstDEI	CTNAG	3 cut(s)	696, 720, 1166
BstDSI	CCRYGG	3 cut(s)	37, 69, 783
BstF5I	GGATG	2 cut(s)	551, 1039
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	5 cut(s)	53, 160, 184, 211, 453
BstMAI	GTCTC	3 cut(s)	549, 716, 822
BstMBI	GATC	5 cut(s)	50, 157, 181, 208, 450
BstMCI	CGRYCG	1 cut(s)	623
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 338, 526
BstNI	CCWGG	1 cut(s)	425
BstSCI	CCNGG	2 cut(s)	423, 870
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	948
BstV2I	GAAGAC	2 cut(s)	511, 1020
BstX2I	RGATCY	1 cut(s)	50
BstXI	CCANNNNNNTGG	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	1048
BsuRI	GGCC	3 cut(s)	36, 103, 1072
BtgI	CCRYGG	3 cut(s)	37, 69, 783
BtsCI	GGATG	2 cut(s)	551, 1039
Cac8I	GCNNGC	2 cut(s)	250, 480
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	2 cut(s)	136, 1070
CseI	GACGC	1 cut(s)	753
Csp6I	GTAC	1 cut(s)	633
CviAII	CATG	3 cut(s)	309, 784, 807
CviQI	GTAC	1 cut(s)	633
DdeI	CTNAG	3 cut(s)	696, 720, 1166
DpnI	GATC	5 cut(s)	52, 159, 183, 210, 452
DpnII	GATC	5 cut(s)	50, 157, 181, 208, 450
DraI	TTTAAA	1 cut(s)	1080
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	126, 423
EarI	CTCTTC	2 cut(s)	126, 423
EciI	GGCGGA	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	783
Eco24I	GRGCYC	1 cut(s)	782
Eco47I	GGWCC	1 cut(s)	136
Eco47III	AGCGCT	1 cut(s)	228
Eco57I	CTGAAG	2 cut(s)	417, 1034
Eco72I	CACGTG	1 cut(s)	1016
EcoRII	CCWGG	1 cut(s)	423
EcoT14I	CCWWGG	1 cut(s)	783
EcoT22I	ATGCAT	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	782
ErhI	CCWWGG	1 cut(s)	783
FaeI	CATG	3 cut(s)	312, 787, 810
FaiI	YATR	8 cut(s)	310, 518, 536, 785, 808, 898, 980, 1174
FaqI	GGGAC	1 cut(s)	876
FatI	CATG	3 cut(s)	308, 783, 806
FauI	CCCGC	1 cut(s)	4
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	3 cut(s)	43, 527, 937
FokI	GGATG	2 cut(s)	538, 1046
FriOI	GRGCYC	1 cut(s)	782
Fsp4HI	GCNGC	3 cut(s)	43, 527, 937
FspBI	CTAG	3 cut(s)	215, 639, 933
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	3 cut(s)	43, 527, 937
GsuI	CTGGAG	1 cut(s)	1028
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	3 cut(s)	36, 103, 1072
HapII	CCGG	1 cut(s)	871
HgaI	GACGC	1 cut(s)	753
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	3 cut(s)	312, 787, 810
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HpaII	CCGG	1 cut(s)	871
HphI	GGTGA	6 cut(s)	392, 656, 860, 935, 957, 975
Hpy188III	TCNNGA	4 cut(s)	395, 496, 1052, 1117
Hpy99I	CGWCG	1 cut(s)	769
HpyAV	CCTTC	5 cut(s)	277, 322, 468, 579, 711
HpyCH4III	ACNGT	3 cut(s)	355, 510, 624
HpyCH4IV	ACGT	1 cut(s)	1015
HpyCH4V	TGCA	4 cut(s)	97, 292, 347, 489
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 338, 526
HpyF3I	CTNAG	3 cut(s)	696, 720, 1166
HpySE526I	ACGT	1 cut(s)	1015
Hsp92II	CATG	3 cut(s)	312, 787, 810
HspAI	GCGC	1 cut(s)	227
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	5 cut(s)	50, 157, 181, 208, 450
LmnI	GCTCC	4 cut(s)	245, 346, 785, 1009
Lsp1109I	GCAGC	1 cut(s)	948
LweI	GCATC	1 cut(s)	949
MaeI	CTAG	3 cut(s)	215, 639, 933
MaeII	ACGT	1 cut(s)	1015
MaeIII	GTNAC	4 cut(s)	19, 595, 712, 981
MalI	GATC	5 cut(s)	52, 159, 183, 210, 452
MboI	GATC	5 cut(s)	50, 157, 181, 208, 450
MboII	GAAGA	9 cut(s)	60, 88, 91, 131, 143, 440, 516, 1020, 1040
MflI	RGATCY	1 cut(s)	50
MhlI	GDGCHC	3 cut(s)	318, 782, 1172
MluCI	AATT	5 cut(s)	92, 195, 668, 771, 793
MlyI	GAGTC	5 cut(s)	400, 440, 452, 749, 796
Mph1103I	ATGCAT	1 cut(s)	294
MseI	TTAA	5 cut(s)	198, 231, 387, 812, 1079
MspI	CCGG	1 cut(s)	871
MspR9I	CCNGG	2 cut(s)	425, 872
Mva1269I	GAATGC	2 cut(s)	292, 1104
MvaI	CCWGG	1 cut(s)	425
MwoI	GCNNNNNNNGC	3 cut(s)	42, 338, 526
NciI	CCSGG	1 cut(s)	872
NcoI	CCATGG	1 cut(s)	783
NdeII	GATC	5 cut(s)	50, 157, 181, 208, 450
NlaIII	CATG	3 cut(s)	312, 787, 810
NlaIV	GGNNCC	3 cut(s)	315, 781, 1011
NmeAIII	GCCGAG	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	981
NsiI	ATGCAT	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	2 cut(s)	292, 1104
PfeI	GAWTC	6 cut(s)	263, 437, 688, 707, 909, 926
PkrI	GCNGC	3 cut(s)	44, 528, 938
PleI	GAGTC	5 cut(s)	399, 439, 451, 748, 796
PmaCI	CACGTG	1 cut(s)	1016
PmlI	CACGTG	1 cut(s)	1016
PpsI	GAGTC	5 cut(s)	399, 439, 451, 748, 796
Ppu21I	YACGTR	1 cut(s)	1016
PshBI	ATTAAT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	423
PspCI	CACGTG	1 cut(s)	1016
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	3 cut(s)	315, 781, 1011
PspPI	GGNCC	2 cut(s)	136, 1070
PstI	CTGCAG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	1 cut(s)	634
RsaNI	GTAC	1 cut(s)	633
SaqAI	TTAA	5 cut(s)	198, 231, 387, 812, 1079
SatI	GCNGC	3 cut(s)	43, 527, 937
Sau3AI	GATC	5 cut(s)	50, 157, 181, 208, 450
Sau96I	GGNCC	2 cut(s)	136, 1070
SchI	GAGTC	5 cut(s)	400, 440, 452, 749, 796
ScrFI	CCNGG	2 cut(s)	425, 872
SduI	GDGCHC	3 cut(s)	318, 782, 1172
SetI	ASST	6 cut(s)	216, 580, 991, 1018, 1045, 1126
SfaNI	GCATC	1 cut(s)	949
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	136
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	5 cut(s)	92, 195, 668, 771, 793
SsiI	CCGC	4 cut(s)	11, 42, 45, 527
SspMI	CTAG	3 cut(s)	215, 639, 933
StyD4I	CCNGG	2 cut(s)	423, 870
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	3 cut(s)	355, 510, 624
TaiI	ACGT	1 cut(s)	1018
TaqI	TCGA	3 cut(s)	56, 111, 767
TasI	AATT	5 cut(s)	92, 195, 668, 771, 793
TauI	GCSGC	2 cut(s)	45, 529
TfiI	GAWTC	6 cut(s)	263, 437, 688, 707, 909, 926
Tru1I	TTAA	5 cut(s)	198, 231, 387, 812, 1079
Tru9I	TTAA	5 cut(s)	198, 231, 387, 812, 1079
TseFI	GTSAC	1 cut(s)	981
TseI	GCWGC	1 cut(s)	936
Tsp45I	GTSAC	1 cut(s)	981
TspDTI	ATGAA	2 cut(s)	1035, 1050
TspGWI	ACGGA	1 cut(s)	626
VpaK11BI	GGWCC	1 cut(s)	136
VspI	ATTAAT	1 cut(s)	198
XapI	RAATTY	2 cut(s)	668, 793
XspI	CTAG	3 cut(s)	215, 639, 933
Zsp2I	ATGCAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.