Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000213.1

Orthogroup ID

OG0006744

Physical Location & Seq

Genomic Coordinates Forward (+)

511909 .. 512769

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000213.1_g000127.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 425 bp

atgaggaacgaagagaaatcgaggccggtgaggaaggcgttgagggacgtgtcgaatagccacggcggcggaagaccctcgatattctcaaccacggcgaagaagaaagacaaggaattgcagaggccgagggtcgaacaagaagaacgtaaagaagaggaccaaaacgatgtcgttttggatcgcctcttgcttgttcagtccgatctatcagccctaattaatcagccatgggtgcccagatttcagaaggcactttgtgctcctgcagaaacggtggttgtgagtgaagttgagagtggtgagattaagagtcctgaagttgaggggaaagggattgagagcctggaagagtctgattcagagtcgttgatctcgccttctccccttgtttcgtggcgtgctgactgcactatccagagagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.89

Weight (kDa)

5.22

Isoelectric Point (pI)

65.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12540 AT4G12540 AT4G12540 AT4G12540 AT4G12540
fragaria_vesca	FvH4_6g32410 FvH4_6g32410
malus_domestica	MD09G1202700.v1.1 MD17G1183900.v1.1
prunus_persica	Prupe.3G058900_v2.0.a1
pyrus_communis	pycom09g11960 pycom17g19330
rosa_chinensis	RchiOBHm_Chr2g0140551
rosa_laevigata	RLG00000019877
rosa_multiflora	Rmu_co8291533.1_g000001 Rmu_sc0002521.1_g000027 Rmu_ssc0000213.1_g000127
rosa_roxburghii	Rroxscaffold_153G00436640 Rroxscaffold_2G00104690 Rroxscaffold_2G00104700
rosa_rugosa	Rorug02G0363500
rosa_samantha	Rh2AG414500 Rh2BG424400 Rh2CG400900 Rh2DG434400
rosa_wichuraiana	Rw2G033950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	235
AciI	CCGC	2 cut(s)	66, 69
AclWI	GGATC	1 cut(s)	189
AcuI	CTGAAG	1 cut(s)	339
AdeI	CACNNNGTG	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	48
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	345
Alw21I	GWGCWC	1 cut(s)	265
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	2 cut(s)	23, 125
AseI	ATTAAT	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	40, 314
AvaII	GGWCC	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	240
BanI	GGYRCC	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	265
BceAI	ACGGC	2 cut(s)	79, 111
BciT130I	CCWGG	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	267
BglI	GCCNNNNNGGC	1 cut(s)	66
BisI	GCNGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	68
Bme1390I	CCNGG	1 cut(s)	347
Bme18I	GGWCC	1 cut(s)	160
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	347
BpiI	GAAGAC	1 cut(s)	79
BsaJI	CCNNGG	4 cut(s)	61, 93, 128, 230
Bse118I	RCCGGY	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	4 cut(s)	61, 93, 128, 230
BseSI	GKGCMC	1 cut(s)	240
BsgI	GTGCAG	1 cut(s)	394
BshFI	GGCC	2 cut(s)	25, 127
BshNI	GGYRCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	25, 127
Bsp1286I	GDGCHC	2 cut(s)	240, 265
Bsp143I	GATC	3 cut(s)	181, 205, 372
Bsp19I	CCATGG	1 cut(s)	230
BspACI	CCGC	2 cut(s)	66, 69
BspANI	GGCC	2 cut(s)	25, 127
BspLI	GGNNCC	1 cut(s)	237
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	4 cut(s)	61, 93, 128, 230
BssMI	GATC	3 cut(s)	181, 205, 372
BssT1I	CCWWGG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	3 cut(s)	6, 150, 345
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	402
BstDSI	CCRYGG	3 cut(s)	61, 93, 230
BstKTI	GATC	3 cut(s)	184, 208, 375
BstMBI	GATC	3 cut(s)	181, 205, 372
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 235, 260
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	345
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	240
BstV2I	GAAGAC	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	25, 127
BtgI	CCRYGG	3 cut(s)	61, 93, 230
BtrI	CACGTC	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	402
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	160
CviAII	CATG	1 cut(s)	231
CviJI	RGCY	6 cut(s)	25, 60, 127, 215, 229, 345
CviKI_1	RGCY	6 cut(s)	25, 60, 127, 215, 229, 345
DpnI	GATC	3 cut(s)	183, 207, 374
DpnII	GATC	3 cut(s)	181, 205, 372
DraIII	CACNNNGTG	1 cut(s)	260
Eam1104I	CTCTTC	3 cut(s)	6, 150, 345
EarI	CTCTTC	3 cut(s)	6, 150, 345
EciI	GGCGGA	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	1 cut(s)	234
FaiI	YATR	1 cut(s)	232
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	1 cut(s)	230
Fnu4HI	GCNGC	1 cut(s)	67
Fsp4HI	GCNGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	25, 127
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	1 cut(s)	234
HinfI	GANTC	4 cut(s)	313, 353, 359, 365
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	40, 314
Hpy188I	TCNGA	4 cut(s)	205, 249, 358, 364
Hpy188III	TCNNGA	2 cut(s)	317, 418
HpyAV	CCTTC	3 cut(s)	28, 244, 390
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	2 cut(s)	48, 148
HpyCH4V	TGCA	3 cut(s)	121, 269, 411
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 235, 260
HpySE526I	ACGT	2 cut(s)	48, 148
Hsp92II	CATG	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	181, 205, 372
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	6 cut(s)	39, 253, 279, 330, 332, 359
MaeII	ACGT	2 cut(s)	48, 148
MalI	GATC	3 cut(s)	183, 207, 374
MboI	GATC	3 cut(s)	181, 205, 372
MboII	GAAGA	7 cut(s)	23, 84, 112, 115, 155, 167, 362
MhlI	GDGCHC	2 cut(s)	240, 265
MluCI	AATT	2 cut(s)	116, 219
MlyI	GAGTC	3 cut(s)	322, 362, 374
MseI	TTAA	2 cut(s)	222, 309
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	3 cut(s)	66, 235, 260
NcoI	CCATGG	1 cut(s)	230
NdeII	GATC	3 cut(s)	181, 205, 372
NlaIII	CATG	1 cut(s)	234
NlaIV	GGNNCC	1 cut(s)	237
NmeAIII	GCCGAG	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	68
PleI	GAGTC	3 cut(s)	321, 361, 373
PpsI	GAGTC	3 cut(s)	321, 361, 373
PshBI	ATTAAT	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	271
SaqAI	TTAA	2 cut(s)	222, 309
SatI	GCNGC	1 cut(s)	67
Sau3AI	GATC	3 cut(s)	181, 205, 372
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	3 cut(s)	322, 362, 374
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	2 cut(s)	240, 265
SetI	ASST	2 cut(s)	51, 151
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	1 cut(s)	160
Sse9I	AATT	2 cut(s)	116, 219
SsiI	CCGC	2 cut(s)	66, 69
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	2 cut(s)	51, 151
TaqI	TCGA	4 cut(s)	20, 53, 80, 135
TasI	AATT	2 cut(s)	116, 219
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	2 cut(s)	222, 309
Tru9I	TTAA	2 cut(s)	222, 309
VpaK11BI	GGWCC	1 cut(s)	160
VspI	ATTAAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.