AT4G14930

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006194
Physical Location & Seq
Forward (+)
8538586 .. 8541899
3314 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14930.1

Sequence Viewer

Length: 948 bp
ATGGAGATTGACGGTGGAGATCGTATTTCCGGTGAACGACCGATCATTATGGTCACCAACGACGACGGAATAGACGCGCCTGGCCTTCGTTCTCTTGTTCGTGTCCTCGTCTCCACTAACCTCTACGATGTTCGCGTTTGCGCTCCTGATTCGGAGAAATCTGCTGTTAGTCACAGTATAATATGGAGTAGACCACTCACTGCAAAACGAGTAGAGATCGATGGAGCTACTGCTTATTCTGTTGATGGAACTCCTGCGGATTGCACTGGTTTGGGCTTATCGGAAGCACTCTTTCCTTCTCGTCCTGACCTGGTTCTGAGTGGTATAAACGTGGGTAGCAACTGCGGTTATAACATCGTCTATTCTGGAACTGTTGCTGGCGCTCGTGAAGCCTTCCTTTATGATGTGCCTTCTGCCTCCATATCATATGATTTTGATTGGAAACGTGGAGAGATGAATGCTAATGATTTTGCCCTTTCTGCCCAAGCCTGCTTGCCCATTATCAACGGCATACTCGGTGCAATCAAGAACAAAACTCACCCTATGCAATGCTTTCTGAATATCGATTTGCCGACTGATATTGCTAACCACAAGGGATACAAACTAACTAGACAAGGTAAAAGCATGGGTAAAATGGGATGGAGACAAGTGGAAGAGGAAGCACAAGGGCCGAAGATGTTATCAACAATGACAATGGATACAGAGTCAGGAGTAGTCTCATCAGAGAACGACACATCTGCTCATGCGGGAAAAGATAGCCGTTTATTCAAAAGAGAGTTAAGGGCAAGCATCAGTGAAGAAGGGAGTGATTCTCATTACCTAAAAGAAGGATTTATTACGGTGACGCCGCTTGGAGCTCTATCTCAGACTGATGTGGATTGCCAAAACTACTACAAAGAATGGCTTCCCAAGATTACAAACCAGTCATGCTCCTCCTCATCCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

315

Amino Acids

34.12

Weight (kDa)

5.05

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SurE PF01975 16 - 209 5.2e-53 Survival protein SurE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AccI GTMKAC 1 cut(s) 190
AccII CGCG 2 cut(s) 77, 135
AciI CCGC 4 cut(s) 257, 345, 746, 848
AcyI GRCGYC 1 cut(s) 845
AgsI TTSAA 1 cut(s) 769
AjnI CCWGG 2 cut(s) 79, 309
AluBI AGCT 2 cut(s) 227, 857
AluI AGCT 2 cut(s) 227, 857
Alw21I GWGCWC 1 cut(s) 859
Alw26I GTCTC 3 cut(s) 115, 637, 721
AoxI GGCC 2 cut(s) 82, 668
Asp700I GAANNNNTTC 1 cut(s) 903
AspLEI GCGC 3 cut(s) 79, 143, 383
AspS9I GGNCC 1 cut(s) 668
AsuHPI GGTGA 4 cut(s) 44, 46, 530, 853
BanII GRGCYC 1 cut(s) 859
BauI CACGAG 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 859
BccI CCATC 3 cut(s) 215, 239, 633
BceAI ACGGC 2 cut(s) 523, 744
BcgI CGANNNNNNTGC 2 cut(s) 719, 753
BciT130I CCWGG 2 cut(s) 81, 311
BciVI GTATCC 2 cut(s) 590, 691
BcoDI GTCTC 3 cut(s) 115, 637, 721
BfaI CTAG 1 cut(s) 609
BfoI RGCGCY 1 cut(s) 384
BfuI GTATCC 2 cut(s) 590, 691
BisI GCNGC 1 cut(s) 848
BlsI GCNGC 1 cut(s) 849
Bme1390I CCNGG 2 cut(s) 81, 311
BmgT120I GGNCC 1 cut(s) 668
BmrFI CCNGG 2 cut(s) 81, 311
BmsI GCATC 1 cut(s) 798
BplI GAGNNNNNCTC 2 cut(s) 796, 828
Bsa29I ATCGAT 2 cut(s) 219, 564
BsaHI GRCGYC 1 cut(s) 845
BsaWI WCCGGW 1 cut(s) 29
Bse1I ACTGG 2 cut(s) 271, 922
Bse3DI GCAATG 1 cut(s) 554
BseBI CCWGG 2 cut(s) 81, 311
BseCI ATCGAT 2 cut(s) 219, 564
BseGI GGATG 2 cut(s) 644, 938
BseMI GCAATG 1 cut(s) 554
BseMII CTCAG 2 cut(s) 308, 878
BseNI ACTGG 2 cut(s) 271, 922
BseRI GAGGAG 2 cut(s) 922, 925
Bsh1236I CGCG 2 cut(s) 77, 135
Bsh1285I CGRYCG 1 cut(s) 41
BshFI GGCC 2 cut(s) 84, 670
BshVI ATCGAT 2 cut(s) 219, 564
BsiEI CGRYCG 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 859
BsiSI CCGG 1 cut(s) 30
BsmAI GTCTC 3 cut(s) 115, 637, 721
BsmBI CGTCTC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 2 cut(s) 84, 670
Bsp1286I GDGCHC 1 cut(s) 859
Bsp143I GATC 3 cut(s) 19, 42, 216
BspACI CCGC 4 cut(s) 257, 345, 746, 848
BspANI GGCC 2 cut(s) 84, 670
BspCNI CTCAG 2 cut(s) 309, 877
BspDI ATCGAT 2 cut(s) 219, 564
BspFNI CGCG 2 cut(s) 77, 135
BsrDI GCAATG 1 cut(s) 554
BsrI ACTGG 2 cut(s) 271, 922
BssMI GATC 3 cut(s) 19, 42, 216
BssNI GRCGYC 1 cut(s) 845
BssSI CACGAG 1 cut(s) 384
Bst2BI CACGAG 1 cut(s) 384
Bst2UI CCWGG 2 cut(s) 81, 311
Bst4CI ACNGT 4 cut(s) 14, 176, 373, 841
Bst6I CTCTTC 1 cut(s) 648
BstACI GRCGYC 1 cut(s) 845
BstC8I GCNNGC 4 cut(s) 379, 490, 494, 787
BstDEI CTNAG 2 cut(s) 317, 864
BstEII GGTNACC 1 cut(s) 52
BstF5I GGATG 2 cut(s) 644, 938
BstFNI CGCG 2 cut(s) 77, 135
BstH2I RGCGCY 1 cut(s) 384
BstHHI GCGC 3 cut(s) 79, 143, 383
BstKTI GATC 3 cut(s) 22, 45, 219
BstMAI GTCTC 3 cut(s) 115, 637, 721
BstMBI GATC 3 cut(s) 19, 42, 216
BstMCI CGRYCG 1 cut(s) 41
BstMWI GCNNNNNNNGC 2 cut(s) 389, 479
BstNI CCWGG 2 cut(s) 81, 311
BstPI GGTNACC 1 cut(s) 52
BstSCI CCNGG 2 cut(s) 79, 309
BstUI CGCG 2 cut(s) 77, 135
Bsu15I ATCGAT 2 cut(s) 219, 564
BsuI GTATCC 2 cut(s) 590, 691
BsuRI GGCC 2 cut(s) 84, 670
BsuTUI ATCGAT 2 cut(s) 219, 564
BtsCI GGATG 2 cut(s) 644, 938
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 3 cut(s) 198, 264, 799
Cac8I GCNNGC 4 cut(s) 379, 490, 494, 787
CfoI GCGC 3 cut(s) 79, 143, 383
Cfr13I GGNCC 1 cut(s) 668
ClaI ATCGAT 2 cut(s) 219, 564
CseI GACGC 2 cut(s) 83, 853
CsiI ACCWGGT 1 cut(s) 309
CviAII CATG 3 cut(s) 625, 743, 927
CviJI RGCY 9 cut(s) 84, 227, 276, 392, 488, 670, 759, 857, 904
CviKI_1 RGCY 9 cut(s) 84, 227, 276, 392, 488, 670, 759, 857, 904
DdeI CTNAG 2 cut(s) 317, 864
DpnI GATC 3 cut(s) 21, 44, 218
DpnII GATC 3 cut(s) 19, 42, 216
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Ecl136II GAGCTC 1 cut(s) 857
Eco24I GRGCYC 1 cut(s) 859
Eco53kI GAGCTC 1 cut(s) 857
Eco91I GGTNACC 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 857
EcoO65I GGTNACC 1 cut(s) 52
EcoRII CCWGG 2 cut(s) 79, 309
EcoT38I GRGCYC 1 cut(s) 859
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 3 cut(s) 628, 746, 930
FalI AAGNNNNNCTT 4 cut(s) 381, 413, 888, 920
FatI CATG 3 cut(s) 624, 742, 926
FauI CCCGC 1 cut(s) 739
FauNDI CATATG 1 cut(s) 427
FblI GTMKAC 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 848
FokI GGATG 2 cut(s) 651, 925
FriOI GRGCYC 1 cut(s) 859
Fsp4HI GCNGC 1 cut(s) 848
FspBI CTAG 1 cut(s) 609
GlaI GCGC 3 cut(s) 78, 142, 382
GluI GCNGC 1 cut(s) 848
HaeII RGCGCY 1 cut(s) 384
HaeIII GGCC 2 cut(s) 84, 670
HapII CCGG 1 cut(s) 30
HgaI GACGC 2 cut(s) 83, 853
HhaI GCGC 3 cut(s) 79, 143, 383
Hin1I GRCGYC 1 cut(s) 845
Hin1II CATG 3 cut(s) 628, 746, 930
Hin6I GCGC 3 cut(s) 77, 141, 381
HinP1I GCGC 3 cut(s) 77, 141, 381
HinfI GANTC 3 cut(s) 149, 704, 809
HpaII CCGG 1 cut(s) 30
HphI GGTGA 4 cut(s) 44, 46, 530, 853
Hpy166II GTNNAC 2 cut(s) 35, 191
Hpy188I TCNGA 6 cut(s) 154, 283, 318, 558, 724, 867
Hpy188III TCNNGA 6 cut(s) 146, 305, 366, 386, 526, 708
Hpy8I GTNNAC 2 cut(s) 35, 191
Hpy99I CGWCG 2 cut(s) 65, 68
HpyAV CCTTC 6 cut(s) 95, 306, 403, 420, 794, 821
HpyCH4III ACNGT 4 cut(s) 14, 176, 373, 841
HpyCH4IV ACGT 2 cut(s) 330, 445
HpyCH4V TGCA 4 cut(s) 203, 264, 521, 547
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 479
HpyF3I CTNAG 2 cut(s) 317, 864
HpySE526I ACGT 2 cut(s) 330, 445
Hsp92I GRCGYC 1 cut(s) 845
Hsp92II CATG 3 cut(s) 628, 746, 930
HspAI GCGC 3 cut(s) 77, 141, 381
Kzo9I GATC 3 cut(s) 19, 42, 216
LmnI GCTCC 4 cut(s) 148, 224, 854, 935
LweI GCATC 1 cut(s) 798
MabI ACCWGGT 1 cut(s) 309
MaeI CTAG 1 cut(s) 609
MaeII ACGT 2 cut(s) 330, 445
MaeIII GTNAC 3 cut(s) 52, 170, 841
MalI GATC 3 cut(s) 21, 44, 218
MboI GATC 3 cut(s) 19, 42, 216
MboII GAAGA 3 cut(s) 665, 685, 809
MhlI GDGCHC 1 cut(s) 859
MlyI GAGTC 1 cut(s) 713
MnlI CCTC 6 cut(s) 116, 131, 427, 649, 943, 946
MroXI GAANNNNTTC 1 cut(s) 903
MseI TTAA 1 cut(s) 779
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 2 cut(s) 81, 311
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 2 cut(s) 81, 311
MvnI CGCG 2 cut(s) 77, 135
MwoI GCNNNNNNNGC 2 cut(s) 389, 479
NdeI CATATG 1 cut(s) 427
NdeII GATC 3 cut(s) 19, 42, 216
NlaIII CATG 3 cut(s) 628, 746, 930
NmuCI GTSAC 3 cut(s) 52, 170, 841
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PctI GAATGC 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 903
PfeI GAWTC 2 cut(s) 149, 809
PkrI GCNGC 1 cut(s) 849
PleI GAGTC 1 cut(s) 712
PpsI GAGTC 1 cut(s) 712
PsiI TTATAA 1 cut(s) 351
Psp124BI GAGCTC 1 cut(s) 859
Psp6I CCWGG 2 cut(s) 79, 309
PspEI GGTNACC 1 cut(s) 52
PspGI CCWGG 2 cut(s) 79, 309
PspPI GGNCC 1 cut(s) 668
SacI GAGCTC 1 cut(s) 859
SaqAI TTAA 1 cut(s) 779
SatI GCNGC 1 cut(s) 848
Sau3AI GATC 3 cut(s) 19, 42, 216
Sau96I GGNCC 1 cut(s) 668
SchI GAGTC 1 cut(s) 713
ScrFI CCNGG 2 cut(s) 81, 311
SduI GDGCHC 1 cut(s) 859
SetI ASST 8 cut(s) 123, 229, 312, 333, 448, 619, 822, 859
SexAI ACCWGGT 1 cut(s) 309
SfaNI GCATC 1 cut(s) 798
SsiI CCGC 4 cut(s) 257, 345, 746, 848
SspMI CTAG 1 cut(s) 609
SstI GAGCTC 1 cut(s) 859
StyD4I CCNGG 2 cut(s) 79, 309
TaaI ACNGT 4 cut(s) 14, 176, 373, 841
TaiI ACGT 2 cut(s) 333, 448
TaqI TCGA 2 cut(s) 219, 564
TaqII GACCGA 1 cut(s) 55
TauI GCSGC 1 cut(s) 850
TfiI GAWTC 2 cut(s) 149, 809
Tru1I TTAA 1 cut(s) 779
Tru9I TTAA 1 cut(s) 779
TscAI CASTG 3 cut(s) 205, 271, 799
TseFI GTSAC 3 cut(s) 52, 170, 841
Tsp45I GTSAC 3 cut(s) 52, 170, 841
TspDTI ATGAA 1 cut(s) 470
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 3 cut(s) 205, 271, 799
XmiI GTMKAC 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 903
XspI CTAG 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.