Prupe.1G013000_v2.0.a1

5'-nucleotidase surE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0006194
Physical Location & Seq
Reverse (-)
984088 .. 988733
4646 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G013000.2

Sequence Viewer

Length: 936 bp
ATGGAAAACAACAGTATCATCTCCGGCGACAAGCCCACAGTGATGGTGACGAACGACGACGGAATCGAAGGTCCTGGACTTCTGGCTCTGGTTCAAGTCCTCGTCTCCACCCGTCGCTACAATGTTCTTGTCTGCGCCCCTGAATCGGAACAGTCAGCTGTGAGTCACTGCATCACATGGCGTCATCCAATTGCTGCCAAGCAAGTGCATATTGATGGAGCAACAGCCTATGCTGTTTCTGGAAGTCCGGCTGATTGTGCTTCTCTGGGTATCTCCAAAACGCTTTTTCCTTCAGTTCCTGACCTGGTAATCAGTGGCATAAACATGGGCAGTAACTGTGGTTATCACATTGTTTACTCTGGAACAGTGGCTGGTGCTCGTGAGGCCTTTCTTAATGGTGTACCTGCAATCTCTGTATCCTATGATTGGGTTGGAGCTAAGAGCAGTATTAATGACTTCACACTTGCTGCCGAGGCTTGCTTACCTATCATAAATGGAGTACTGGCGGAATTAAGAAACAAAACTTATCCCCAAAACTGTTTCTTGAATATAGATCTGCCAGCAAATATTGCTAACCATAAGGGGTATAAGCTCACTAAGCAAGGTAAAAGTTTAATCAAAATGGGGTGGAGGCAAGTTACTTCTGAGTCTGACAAGGCAGCAGGAAAAATGTTGTCAACAATGGTAATGGAGACGGATTCAACAGCATCTACAGAAATTAATGCATCAGCTACATCAGCAGAACATCTTTTGTTCACGAGAGAAATAAGGAGTGGCCAAGTCGATGAGGATGATAGTGACCACCGATCTCTTCAAGAAGGATATATTACTGTCACTCCTCTTGGTGCCTTGTCTAATGTTGAGATAGATTGCCATGCCTACTTAAAAGAGTGGCTGCCAAATGCAGCTGAACGCTTGTCTGCATCGGCCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

312

Amino Acids

33.22

Weight (kDa)

5.25

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 934
Acc36I ACCTGC 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 845
AciI CCGC 1 cut(s) 506
AcoI YGGCCR 1 cut(s) 775
AcuI CTGAAG 1 cut(s) 276
AcyI GRCGYC 1 cut(s) 181
AfaI GTAC 2 cut(s) 402, 501
AfiI CCNNNNNNNGG 2 cut(s) 145, 426
AgsI TTSAA 4 cut(s) 95, 547, 702, 815
AjnI CCWGG 2 cut(s) 73, 303
AluBI AGCT 5 cut(s) 158, 437, 592, 731, 908
AluI AGCT 5 cut(s) 158, 437, 592, 731, 908
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 2 cut(s) 109, 686
AlwNI CAGNNNCTG 3 cut(s) 299, 336, 371
AoxI GGCC 3 cut(s) 384, 775, 927
ApeKI GCWGC 5 cut(s) 194, 467, 659, 895, 905
AseI ATTAAT 2 cut(s) 450, 720
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 71
BaeI ACNNNNGTAYC 1 cut(s) 31
BalI TGGCCA 1 cut(s) 777
BanI GGYRCC 1 cut(s) 845
BauI CACGAG 2 cut(s) 378, 757
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 5 cut(s) 181, 454, 671, 882, 917
BccI CCATC 2 cut(s) 37, 209
BciT130I CCWGG 2 cut(s) 75, 305
BciVI GTATCC 1 cut(s) 427
BcoDI GTCTC 2 cut(s) 109, 686
BfmI CTRYAG 1 cut(s) 711
BfuAI ACCTGC 1 cut(s) 412
BfuI GTATCC 1 cut(s) 427
BglII AGATCT 1 cut(s) 553
BisI GCNGC 5 cut(s) 195, 468, 660, 896, 906
BlsI GCNGC 5 cut(s) 196, 469, 661, 897, 907
BmcAI AGTACT 1 cut(s) 501
Bme1390I CCNGG 2 cut(s) 75, 305
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 847
BmrFI CCNGG 2 cut(s) 75, 305
BmsI GCATC 4 cut(s) 180, 716, 734, 932
BsaHI GRCGYC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 471
BsaXI ACNNNNNCTCC 2 cut(s) 820, 850
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 426
Bse1I ACTGG 1 cut(s) 507
BseBI CCWGG 2 cut(s) 75, 305
BseDI CCNNGG 1 cut(s) 471
BseGI GGATG 2 cut(s) 184, 796
BseLI CCNNNNNNNGG 2 cut(s) 145, 426
BseMII CTCAG 1 cut(s) 636
BseNI ACTGG 1 cut(s) 507
BseRI GAGGAG 1 cut(s) 828
BseXI GCAGC 5 cut(s) 181, 454, 671, 882, 917
BshFI GGCC 3 cut(s) 386, 777, 929
BshNI GGYRCC 1 cut(s) 845
BsiHKAI GWGCWC 1 cut(s) 379
BsiSI CCGG 2 cut(s) 24, 248
BslI CCNNNNNNNGG 2 cut(s) 145, 426
BsmAI GTCTC 2 cut(s) 109, 686
BsmBI CGTCTC 2 cut(s) 109, 686
BsnI GGCC 3 cut(s) 386, 777, 929
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 2 cut(s) 553, 806
BspACI CCGC 1 cut(s) 506
BspANI GGCC 3 cut(s) 386, 777, 929
BspCNI CTCAG 1 cut(s) 637
BspLI GGNNCC 1 cut(s) 847
BspMI ACCTGC 1 cut(s) 412
BspT107I GGYRCC 1 cut(s) 845
BsrI ACTGG 1 cut(s) 507
BssECI CCNNGG 1 cut(s) 471
BssMI GATC 2 cut(s) 553, 806
BssNI GRCGYC 1 cut(s) 181
BssSI CACGAG 2 cut(s) 378, 757
Bst2BI CACGAG 2 cut(s) 378, 757
Bst2UI CCWGG 2 cut(s) 75, 305
Bst4CI ACNGT 7 cut(s) 14, 40, 153, 338, 367, 539, 832
Bst6I CTCTTC 1 cut(s) 816
BstACI GRCGYC 1 cut(s) 181
BstAPI GCANNNNNTGC 1 cut(s) 569
BstC8I GCNNGC 2 cut(s) 478, 561
BstDEI CTNAG 3 cut(s) 438, 597, 645
BstF5I GGATG 2 cut(s) 184, 796
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 2 cut(s) 556, 809
BstMAI GTCTC 2 cut(s) 109, 686
BstMBI GATC 2 cut(s) 553, 806
BstMWI GCNNNNNNNGC 6 cut(s) 257, 383, 473, 569, 598, 737
BstNI CCWGG 2 cut(s) 75, 305
BstSCI CCNGG 2 cut(s) 73, 303
BstSFI CTRYAG 1 cut(s) 711
BstV1I GCAGC 5 cut(s) 181, 454, 671, 882, 917
BstX2I RGATCY 1 cut(s) 553
BstXI CCANNNNNNTGG 1 cut(s) 43
BstYI RGATCY 1 cut(s) 553
BsuI GTATCC 1 cut(s) 427
BsuRI GGCC 3 cut(s) 386, 777, 929
BtsCI GGATG 2 cut(s) 184, 796
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 4 cut(s) 45, 166, 319, 372
BveI ACCTGC 1 cut(s) 412
Cac8I GCNNGC 2 cut(s) 478, 561
CaiI CAGNNNCTG 3 cut(s) 299, 336, 371
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 71
CseI GACGC 1 cut(s) 170
CsiI ACCWGGT 1 cut(s) 303
Csp6I GTAC 2 cut(s) 401, 500
CviAII CATG 3 cut(s) 177, 325, 875
CviQI GTAC 2 cut(s) 401, 500
DdeI CTNAG 3 cut(s) 438, 597, 645
DpnI GATC 2 cut(s) 555, 808
DpnII GATC 2 cut(s) 553, 806
EaeI YGGCCR 1 cut(s) 775
Eam1104I CTCTTC 1 cut(s) 816
EarI CTCTTC 1 cut(s) 816
EciI GGCGGA 1 cut(s) 521
Eco147I AGGCCT 1 cut(s) 386
Eco47I GGWCC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 276
EcoO109I RGGNCCY 1 cut(s) 71
EcoRII CCWGG 2 cut(s) 73, 303
EcoT22I ATGCAT 1 cut(s) 727
Esp3I CGTCTC 2 cut(s) 109, 686
FaeI CATG 3 cut(s) 180, 328, 878
FatI CATG 3 cut(s) 176, 324, 874
Fnu4HI GCNGC 5 cut(s) 195, 468, 660, 896, 906
FokI GGATG 2 cut(s) 171, 803
Fsp4HI GCNGC 5 cut(s) 195, 468, 660, 896, 906
GlaI GCGC 1 cut(s) 136
GluI GCNGC 5 cut(s) 195, 468, 660, 896, 906
HaeIII GGCC 3 cut(s) 386, 777, 929
HapII CCGG 2 cut(s) 24, 248
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 181
Hin1II CATG 3 cut(s) 180, 328, 878
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 1 cut(s) 678
HindII GTYRAC 1 cut(s) 678
HinfI GANTC 5 cut(s) 63, 143, 163, 647, 698
HpaII CCGG 2 cut(s) 24, 248
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 4 cut(s) 355, 401, 678, 756
Hpy188I TCNGA 3 cut(s) 148, 646, 652
Hpy188III TCNNGA 7 cut(s) 240, 299, 360, 380, 544, 757, 815
Hpy8I GTNNAC 4 cut(s) 355, 401, 678, 756
Hpy99I CGWCG 3 cut(s) 59, 62, 117
HpyAV CCTTC 3 cut(s) 62, 300, 812
HpyCH4III ACNGT 7 cut(s) 14, 40, 153, 338, 367, 539, 832
HpyCH4V TGCA 6 cut(s) 171, 208, 407, 725, 905, 923
HpyF10VI GCNNNNNNNGC 6 cut(s) 257, 383, 473, 569, 598, 737
HpyF3I CTNAG 3 cut(s) 438, 597, 645
Hsp92I GRCGYC 1 cut(s) 181
Hsp92II CATG 3 cut(s) 180, 328, 878
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 2 cut(s) 553, 806
LmnI GCTCC 2 cut(s) 218, 434
Lsp1109I GCAGC 5 cut(s) 181, 454, 671, 882, 917
LweI GCATC 4 cut(s) 180, 716, 734, 932
MabI ACCWGGT 1 cut(s) 303
MaeIII GTNAC 6 cut(s) 46, 164, 332, 637, 797, 832
MalI GATC 2 cut(s) 555, 808
MboI GATC 2 cut(s) 553, 806
MboII GAAGA 1 cut(s) 803
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 1 cut(s) 379
MlsI TGGCCA 1 cut(s) 777
MluCI AATT 3 cut(s) 189, 509, 717
MluNI TGGCCA 1 cut(s) 777
MlyI GAGTC 2 cut(s) 172, 656
MmeI TCCRAC 1 cut(s) 412
MnlI CCTC 6 cut(s) 110, 376, 466, 624, 781, 849
Mox20I TGGCCA 1 cut(s) 777
Mph1103I ATGCAT 1 cut(s) 727
MscI TGGCCA 1 cut(s) 777
MseI TTAA 6 cut(s) 393, 450, 512, 614, 720, 884
MslI CAYNNNNRTG 3 cut(s) 41, 213, 323
Msp20I TGGCCA 1 cut(s) 777
MspA1I CMGCKG 2 cut(s) 158, 908
MspI CCGG 2 cut(s) 24, 248
MspR9I CCNGG 2 cut(s) 75, 305
MunI CAATTG 1 cut(s) 189
MvaI CCWGG 2 cut(s) 75, 305
MwoI GCNNNNNNNGC 6 cut(s) 257, 383, 473, 569, 598, 737
NdeII GATC 2 cut(s) 553, 806
NlaIII CATG 3 cut(s) 180, 328, 878
NlaIV GGNNCC 1 cut(s) 847
NmeAIII GCCGAG 1 cut(s) 496
NmuCI GTSAC 4 cut(s) 46, 164, 797, 832
NsiI ATGCAT 1 cut(s) 727
PceI AGGCCT 1 cut(s) 386
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PfeI GAWTC 3 cut(s) 63, 143, 698
PfoI TCCNGGA 1 cut(s) 73
PkrI GCNGC 5 cut(s) 196, 469, 661, 897, 907
PleI GAGTC 2 cut(s) 171, 655
PpsI GAGTC 2 cut(s) 171, 655
PpuMI RGGWCCY 1 cut(s) 71
PshBI ATTAAT 2 cut(s) 450, 720
PsiI TTATAA 1 cut(s) 934
Psp5II RGGWCCY 1 cut(s) 71
Psp6I CCWGG 2 cut(s) 73, 303
PspGI CCWGG 2 cut(s) 73, 303
PspN4I GGNNCC 1 cut(s) 847
PspPI GGNCC 1 cut(s) 71
PspPPI RGGWCCY 1 cut(s) 71
PstNI CAGNNNCTG 3 cut(s) 299, 336, 371
PsuI RGATCY 1 cut(s) 553
PvuII CAGCTG 2 cut(s) 158, 908
RsaI GTAC 2 cut(s) 402, 501
RsaNI GTAC 2 cut(s) 401, 500
RseI CAYNNNNRTG 3 cut(s) 41, 213, 323
SaqAI TTAA 6 cut(s) 393, 450, 512, 614, 720, 884
SatI GCNGC 5 cut(s) 195, 468, 660, 896, 906
Sau3AI GATC 2 cut(s) 553, 806
Sau96I GGNCC 1 cut(s) 71
ScaI AGTACT 1 cut(s) 501
SchI GAGTC 2 cut(s) 172, 656
ScrFI CCNGG 2 cut(s) 75, 305
SduI GDGCHC 1 cut(s) 379
SexAI ACCWGGT 1 cut(s) 303
SfaNI GCATC 4 cut(s) 180, 716, 734, 932
SfcI CTRYAG 1 cut(s) 711
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 3 cut(s) 41, 213, 323
Sse9I AATT 3 cut(s) 189, 509, 717
SseBI AGGCCT 1 cut(s) 386
SsiI CCGC 1 cut(s) 506
SspI AATATT 1 cut(s) 568
StuI AGGCCT 1 cut(s) 386
StyD4I CCNGG 2 cut(s) 73, 303
TaaI ACNGT 7 cut(s) 14, 40, 153, 338, 367, 539, 832
TaqI TCGA 2 cut(s) 66, 783
TasI AATT 3 cut(s) 189, 509, 717
TatI WGTACW 1 cut(s) 499
TfiI GAWTC 3 cut(s) 63, 143, 698
Tru1I TTAA 6 cut(s) 393, 450, 512, 614, 720, 884
Tru9I TTAA 6 cut(s) 393, 450, 512, 614, 720, 884
TscAI CASTG 4 cut(s) 45, 173, 319, 372
TseFI GTSAC 4 cut(s) 46, 164, 797, 832
TseI GCWGC 5 cut(s) 194, 467, 659, 895, 905
Tsp45I GTSAC 4 cut(s) 46, 164, 797, 832
TspGWI ACGGA 2 cut(s) 75, 710
TspRI CASTG 4 cut(s) 45, 173, 319, 372
VpaK11BI GGWCC 1 cut(s) 71
VspI ATTAAT 2 cut(s) 450, 720
ZrmI AGTACT 1 cut(s) 501
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.